Name | qq7LDmSbsRvnShfckohDCDFpABFKDmABFKDmQ6FKDm3BFKDm3kQqnn_0 |
Workunit | 1935531 |
Created | 10 Sep 2019, 10:31:14 UTC |
Sent | 10 Sep 2019, 10:31:44 UTC |
Report deadline | 17 Sep 2019, 10:31:44 UTC |
Received | 10 Sep 2019, 10:48:14 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3682 |
Run time | 15 min 9 sec |
CPU time | 29 min 19 sec |
Validate state | Valid |
Credit | 37.51 |
Device peak FLOPS | 17.83 GFLOPS |
Application version | ATLAS Simulation v0.72 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 2.54 GB |
Peak disk usage | 731.89 MB |
<core_client_version>7.16.1</core_client_version> <![CDATA[ <stderr_txt> 12:31:56 (62204): wrapper (7.7.26015): starting 12:31:56 (62204): wrapper: running run_atlas (--nthreads 4) 2019-09-10 12:31:56,278: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-09-10 12:31:56,278: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-09-10 12:31:56,279: THREADS=4 2019-09-10 12:31:56,279: Checking for CVMFS 2019-09-10 12:31:58,224: CVMFS is installed 2019-09-10 12:31:58,227: OS:CentOS Linux release 7.6.1810 (Core) 2019-09-10 12:31:58,227: This is not SLC6, need to run with Singularity.... 2019-09-10 12:31:58,227: Checking Singularity... 2019-09-10 12:31:58,349: Singularity is installed, version singularity version 3.2.1-1.1.el7 2019-09-10 12:31:58,349: Testing the function of Singularity... 2019-09-10 12:31:58,349: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-09-10 12:31:59,416: Singularity Works... 2019-09-10 12:31:59,416: copy /home/dcameron/boinc/slots/0/shared/ATLAS.root_0 2019-09-10 12:32:01,004: copy /home/dcameron/boinc/slots/0/shared/input.tar.gz 2019-09-10 12:32:01,004: copy /home/dcameron/boinc/slots/0/shared/RTE.tar.gz 2019-09-10 12:32:01,004: copy /home/dcameron/boinc/slots/0/shared/start_atlas.sh 2019-09-10 12:32:01,004: export ATHENA_PROC_NUMBER=4; 2019-09-10 12:32:01,260: start atlas job with PandaID=4002876565 2019-09-10 12:32:01,260: cmd = singularity exec --pwd /home/dcameron/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-09-10 12:47:03,145: running cmd return value is 0 2019-09-10 12:47:03,146: Moving ./HITS.000649-2007289-20930._078090.pool.root.1 to shared/HITS.pool.root.1 2019-09-10 12:47:03,146: *****************The last 100 lines of the pilot log****************** 2019-09-10 12:47:03,150: 2019-09-10 10:46:10,139 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-09-10 10:46:10,139 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-09-10 10:46:10,139 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-09-10 10:46:10,139 | INFO | retrieve | pilot.control.job | has_job_completed | job 4002876565 has completed 2019-09-10 10:46:10,139 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-09-10 10:46:10,142 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/dcameron/boinc/slots/0/PanDA_Pilot-4002876565 2019-09-10 10:46:11,148 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [69346] 2019-09-10 10:46:11,148 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 69346 2019-09-10 10:46:11,148 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-09-10 10:46:12,153 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-09-10 10:46:12,153 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=69346 2019-09-10 10:46:12,211 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [69346] (in reverse order) 2019-09-10 10:46:12,242 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-09-10 10:46:12,242 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-09-10 10:46:12,243 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-09-10 10:46:12,243 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-09-10 10:46:12,245 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-10 10:46:12,245 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) *** 2019-09-10 10:46:12,245 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-10 10:46:12,245 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-09-10 10:46:12,245 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-09-10 10:46:12,308 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch Distributor ID: ScientificCERNSLC Description: Scientific Linux CERN SLC release 6.10 (Carbon) Release: 6.10 Codename: Carbon 2019-09-10 10:46:12,308 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-10 10:46:12,811 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/dcameron/boinc/slots/0 2019-09-10 10:46:12,824 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (39811284992 B) 2019-09-10 10:46:12,825 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-09-10 10:46:12,825 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-09-10 10:46:12,827 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-09-10 10:46:12,827 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-09-10 10:46:12,836 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-09-10 10:46:12,838 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-09-10 10:46:12,838 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(copytool_in, started 140232762586880)>, <ExcThread(data, started 140233519544064)>, <ExcThread(validate_post, started 140232754194176)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>, <ExcThread(create_data_payload, started 140233282672384)>, <ExcThread(failed_post, started 140232737408768)>, <ExcThread(payload, started 140233291065088)>, <ExcThread(execute_payloads, started 140232729016064)>, <ExcThread(queue_monitor, started 140232720623360)>, <ExcThread(validate_pre, started 140233257494272)>, <ExcThread(validate, started 140233511151360)>, <ExcThread(copytool_out, started 140233299457792)>] 2019-09-10 10:46:12,842 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-09-10 10:46:12,923 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-09-10 10:46:13,139 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-09-10 10:46:13,139 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(copytool_in, started 140232762586880)>, <ExcThread(data, started 140233519544064)>, <ExcThread(validate_post, started 140232754194176)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>, <ExcThread(failed_post, started 140232737408768)>, <ExcThread(payload, started 140233291065088)>, <ExcThread(execute_payloads, started 140232729016064)>, <ExcThread(queue_monitor, started 140232720623360)>, <ExcThread(validate, started 140233511151360)>, <ExcThread(copytool_out, started 140233299457792)>] 2019-09-10 10:46:13,464 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-09-10 10:46:13,501 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-09-10 10:46:13,501 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-09-10 10:46:13,544 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-09-10 10:46:13,544 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-09-10 10:46:13,544 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-09-10 10:46:13,544 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(copytool_in, started 140232762586880)>, <ExcThread(validate_post, started 140232754194176)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>, <ExcThread(failed_post, started 140232737408768)>, <ExcThread(execute_payloads, started 140232729016064)>, <ExcThread(queue_monitor, started 140232720623360)>, <ExcThread(copytool_out, started 140233299457792)>] 2019-09-10 10:46:13,801 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-09-10 10:46:13,846 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-09-10 10:46:13,846 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(copytool_in, started 140232762586880)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>, <ExcThread(failed_post, started 140232737408768)>, <ExcThread(execute_payloads, started 140232729016064)>, <ExcThread(queue_monitor, started 140232720623360)>, <ExcThread(copytool_out, started 140233299457792)>] 2019-09-10 10:46:13,961 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-09-10 10:46:13,985 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-09-10 10:46:14,035 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-09-10 10:46:14,047 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads 2019-09-10 10:46:14,047 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(copytool_in, started 140232762586880)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>, <ExcThread(queue_monitor, started 140232720623360)>, <ExcThread(copytool_out, started 140233299457792)>] 2019-09-10 10:46:14,093 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-09-10 10:46:14,093 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-09-10 10:46:14,148 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-09-10 10:46:14,148 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(copytool_in, started 140232762586880)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>, <ExcThread(copytool_out, started 140233299457792)>] 2019-09-10 10:46:14,296 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-09-10 10:46:14,350 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-09-10 10:46:14,350 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>, <ExcThread(copytool_out, started 140233299457792)>] 2019-09-10 10:46:14,821 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-09-10 10:46:14,986 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-09-10 10:46:15,054 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-09-10 10:46:15,054 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(queue_monitoring, started 140233274279680)>, <ExcThread(job_monitor, started 140232745801472)>] 2019-09-10 10:46:17,822 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-09-10 10:46:17,870 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-09-10 10:46:17,871 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140233748485888)>, <ExcThread(job_monitor, started 140232745801472)>] 2019-09-10 10:47:02,841 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-09-10 10:47:02,842 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-09-10 10:47:02,929 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-09-10 10:47:02,929 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-09-10 10:47:02,929 | INFO | MainThread | root | wrap_up | pilot has finished 2019-09-10 10:47:03 UTC [wrapper] ==== pilot stdout END ==== 2019-09-10 10:47:03 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-09-10 10:47:03 UTC [wrapper] Pilot exit status: 0 2019-09-10 10:47:03 UTC [wrapper] STATUSCODE: 0 2019-09-10 10:47:03 UTC [wrapper] apfmon messages muted ---- find pandaID.out ---- total 56 -rw-------. 1 dcameron zp 11357 Jul 25 16:38 LICENSE -rw-------. 1 dcameron zp 20 Sep 9 13:04 MANIFEST.IN -rw-------. 1 dcameron zp 11 Sep 10 12:32 pandaIDs.out drwx------. 14 dcameron zp 216 Sep 10 12:32 pilot -rwx------. 1 dcameron zp 20136 Sep 9 13:04 pilot.py -rw-------. 1 dcameron zp 9 Sep 9 13:04 PILOTVERSION -rw-------. 1 dcameron zp 2251 Jul 25 16:38 README.md -rw-------. 1 dcameron zp 760 Aug 22 11:01 setup.py -rw-------. 1 dcameron zp 221 Jul 25 16:38 TODO.md -rw-------. 1 dcameron zp 11 Sep 10 12:32 /home/dcameron/boinc/slots/0/pilot2/pandaIDs.out 4002876565 2019-09-10 10:47:03 UTC [wrapper] Test setup, not cleaning 2019-09-10 10:47:03 UTC [wrapper] ==== wrapper stdout END ==== 2019-09-10 10:47:03 UTC [wrapper] ==== wrapper stderr END ==== 2019-09-10 10:47:03 UTC [wrapper] wrapper wrapperexiting ec=0, duration=901 2019-09-10 10:47:03 UTC [wrapper] apfmon messages muted 2019-09-10 12:47:03,152: ***************diag file************ 2019-09-10 12:47:03,152: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=900.99s KernelTime=44.88s UserTime=1758.96s CPUUsage=200% MaxResidentMemory=1955440kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=176397 MinorPageFaults=8966504 Swaps=0 ForcedSwitches=154869 WaitSwitches=3560729 Inputs=41203376 Outputs=84560 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@pcoslo5.cern.ch exitcode=0 2019-09-10 12:47:03,158: ******************************WorkDir*********************** 2019-09-10 12:47:03,158: total 369608 drwxrwx--x. 7 dcameron zp 4096 Sep 10 12:47 . drwxrwx--x. 3 dcameron zp 15 Sep 10 11:23 .. -rw-------. 1 dcameron zp 7536386 Sep 10 12:32 agis_ddmendpoints.json -rw-------. 1 dcameron zp 4079984 Sep 10 12:32 agis_schedconf.cvmfs.json drwx------. 2 dcameron zp 6 Sep 10 12:32 .alrb drwxr-xr-x. 3 dcameron zp 17 Sep 10 12:32 APPS -rw-------. 1 dcameron zp 548 Sep 10 12:32 .asetup -rw-------. 1 dcameron zp 826 Sep 10 12:32 .asetup.save drwx------. 2 dcameron zp 6 Sep 10 12:32 .asetup-sysbin_66570 -rw-r--r--. 1 dcameron zp 0 Sep 10 12:31 boinc_lockfile -rw-r--r--. 1 dcameron zp 8192 Sep 10 12:46 boinc_mmap_file -rw-r--r--. 1 dcameron zp 534 Sep 10 12:41 boinc_task_state.xml -rw-r--r--. 1 dcameron zp 365251149 Sep 10 12:32 EVNT.14296418._001447.pool.root.1 -rw-------. 1 dcameron zp 14727 Sep 10 12:46 heartbeat.json -rw-r--r--. 1 dcameron zp 6286 Sep 10 12:31 init_data.xml -rw-r--r--. 1 dcameron zp 266067 Sep 10 12:32 input.tar.gz -rw-r--r--. 1 dcameron zp 112 Sep 10 12:31 job.xml -rw-------. 1 dcameron zp 713939 Sep 10 12:46 log.000649-2007289-20930._078090.job.log.tgz.1 -rw-------. 1 dcameron zp 180886 Sep 10 12:47 log.14568781._078090.job.log.1 -rw-------. 1 dcameron zp 499 Sep 10 12:47 output.list -rw-------. 1 dcameron zp 2958 Sep 10 12:30 pandaJobData.out drwx------. 3 dcameron zp 229 Sep 10 12:32 pilot2 -rw-r--r--. 1 dcameron zp 259319 Sep 10 12:31 pilot2.tar.gz -rw-------. 1 dcameron zp 11973 Sep 10 12:47 pilotlog.txt -rw-------. 1 dcameron zp 507 Sep 10 12:47 qq7LDmSbsRvnShfckohDCDFpABFKDmABFKDmQ6FKDm3BFKDm3kQqnn.diag -rw-------. 1 dcameron zp 5077 Sep 10 12:32 queuedata.json -rw-r--r--. 1 dcameron zp 815 Sep 10 12:32 RTE.tar.gz -rwxr-xr-x. 1 dcameron zp 8466 Sep 10 12:31 run_atlas -rwx------. 1 dcameron zp 12641 Sep 10 12:30 runpilot2-wrapper.sh -rw-r--r--. 1 dcameron zp 618 Sep 10 12:47 runtime_log -rw-r--r--. 1 dcameron zp 8100 Sep 10 12:47 runtime_log.err -rw-------. 1 dcameron zp 240 Sep 10 12:32 setup.sh.local drwxrwx--x. 2 dcameron zp 131 Sep 10 12:47 shared -rw-r--r--. 1 dcameron zp 8494 Sep 10 12:32 start_atlas.sh -rw-r--r--. 1 dcameron zp 18392 Sep 10 12:47 stderr.txt -rw-r--r--. 1 dcameron zp 107 Sep 10 12:31 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 dcameron zp 25 Sep 10 12:46 wrapper_checkpoint.txt 2019-09-10 12:47:03,158: running start_atlas return value is 0 2019-09-10 12:47:03,158: Parent exit 0 2019-09-10 12:47:03,158: child process exit 0 12:47:03 (62204): run_atlas exited; CPU time 1759.297731 12:47:03 (62204): called boinc_finish(0) </stderr_txt> ]]>
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