Name 1UJLDmMY2TvnShfckohDCDFpABFKDmABFKDmQ6FKDmrEFKDmUBAapn_0
Workunit 1938589
Created 16 Sep 2019, 9:33:13 UTC
Sent 16 Sep 2019, 18:37:26 UTC
Report deadline 23 Sep 2019, 18:37:26 UTC
Received 16 Sep 2019, 19:30:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 3682
Run time 14 min 53 sec
CPU time 28 min 0 sec
Validate state Valid
Credit 36.85
Device peak FLOPS 17.83 GFLOPS
Application version ATLAS Simulation v0.84 (vbox64_mt_mcore_atlas)
x86_64-pc-linux-gnu
Peak working set size 135.20 MB
Peak swap size 8.01 GB
Peak disk usage 3.27 GB

Stderr output

<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
2019-09-16 21:15:09 (1026410): vboxwrapper (7.7.26197): starting
2019-09-16 21:15:09 (1026410): Feature: Checkpoint interval offset (0 seconds)
2019-09-16 21:15:09 (1026410): Detected: VirtualBox VboxManage Interface (Version: 6.0.12)
2019-09-16 21:15:09 (1026410): Detected: Minimum checkpoint interval (900.000000 seconds)
2019-09-16 21:15:09 (1026410): Successfully copied 'init_data.xml' to the shared directory.
2019-09-16 21:15:09 (1026410): Create VM. (boinc_8e04fb0944695ebc, slot#0)
2019-09-16 21:15:09 (1026410): Setting Memory Size for VM. (6600MB)
2019-09-16 21:15:09 (1026410): Setting CPU Count for VM. (4)
2019-09-16 21:15:09 (1026410): Setting Chipset Options for VM.
2019-09-16 21:15:10 (1026410): Setting Boot Options for VM.
2019-09-16 21:15:10 (1026410): Setting Network Configuration for NAT.
2019-09-16 21:15:10 (1026410): Enabling VM Network Access.
2019-09-16 21:15:10 (1026410): Disabling USB Support for VM.
2019-09-16 21:15:10 (1026410): Disabling COM Port Support for VM.
2019-09-16 21:15:10 (1026410): Disabling LPT Port Support for VM.
2019-09-16 21:15:10 (1026410): Disabling Audio Support for VM.
2019-09-16 21:15:10 (1026410): Disabling Clipboard Support for VM.
2019-09-16 21:15:10 (1026410): Disabling Drag and Drop Support for VM.
2019-09-16 21:15:10 (1026410): Adding storage controller(s) to VM.
2019-09-16 21:15:10 (1026410): Adding virtual disk drive to VM. (vm_image.vdi)
2019-09-16 21:15:10 (1026410): Adding VirtualBox Guest Additions to VM.
2019-09-16 21:15:10 (1026410): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-09-16 21:15:10 (1026410): forwarding host port 46326 to guest port 80
2019-09-16 21:15:10 (1026410): Enabling remote desktop for VM.
2019-09-16 21:15:10 (1026410): Required extension pack not installed, remote desktop not enabled.
2019-09-16 21:15:10 (1026410): Enabling shared directory for VM.
2019-09-16 21:15:10 (1026410): Starting VM. (boinc_8e04fb0944695ebc, slot#0)
2019-09-16 21:15:12 (1026410): Successfully started VM. (PID = '1026885')
2019-09-16 21:15:12 (1026410): Reporting VM Process ID to BOINC.
2019-09-16 21:15:12 (1026410): Guest Log: BIOS: VirtualBox 6.0.12
2019-09-16 21:15:12 (1026410): Guest Log: CPUID EDX: 0x178bfbff
2019-09-16 21:15:12 (1026410): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63
2019-09-16 21:15:12 (1026410): VM state change detected. (old = 'poweroff', new = 'running')
2019-09-16 21:15:12 (1026410): Detected: Web Application Enabled (http://localhost:46326)
2019-09-16 21:15:12 (1026410): Preference change detected
2019-09-16 21:15:12 (1026410): Setting CPU throttle for VM. (100%)
2019-09-16 21:15:12 (1026410): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2019-09-16 21:15:14 (1026410): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-09-16 21:15:14 (1026410): Guest Log: BIOS: Booting from Hard Disk...
2019-09-16 21:15:16 (1026410): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-09-16 21:15:16 (1026410): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2019-09-16 21:15:16 (1026410): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2019-09-16 21:15:20 (1026410): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-09-16 21:15:20 (1026410): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-09-16 21:15:21 (1026410): Guest Log: Checking CVMFS...
2019-09-16 21:15:25 (1026410): Guest Log: CVMFS is ok
2019-09-16 21:15:25 (1026410): Guest Log: Mounting shared directory
2019-09-16 21:15:25 (1026410): Guest Log: Copying input files
2019-09-16 21:15:25 (1026410): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.000143 main     Log opened 2019-09-16T21:15:23.514863000Z
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.000221 main     OS Product: Linux
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.000246 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.000265 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.000282 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.000283 main     Process ID: 1864
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.000283 main     Package type: LINUX_64BITS_GENERIC
2019-09-16 21:15:25 (1026410): Guest Log: 00:00:00.001086 main     5.2.32 r132073 started. Verbose level = 0
2019-09-16 21:15:26 (1026410): Guest Log: Copied input files into RunAtlas.
2019-09-16 21:15:26 (1026410): Guest Log: copied the webapp to /var/www
2019-09-16 21:15:26 (1026410): Guest Log: set up http_proxy http://pcoslo5:3128
2019-09-16 21:15:26 (1026410): Guest Log: Detected squid proxy http://pcoslo5:3128 - will set in /etc/cvmfs/default.local
2019-09-16 21:15:35 (1026410): Guest Log: 00:00:10.002752 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 009 330 000ns (GuestNow=1 568 661 334 507 547 000 ns GuestLast=1 568 668 523 516 877 000 ns fSetTimeLastLoop=true )
2019-09-16 21:17:29 (1026410): Guest Log: ATHENA_PROC_NUMBER=4
2019-09-16 21:17:30 (1026410): Guest Log:  *** Starting ATLAS job. (PandaID=4002876565 taskID=000649-3) ***
2019-09-16 21:29:54 (1026410): Guest Log:  *** Job finished ***
2019-09-16 21:29:54 (1026410): Guest Log:  *** The last 20 lines of the pilot log: ***
2019-09-16 21:29:54 (1026410): Guest Log: 2019-09-16 19:29:54 UTC [wrapper] apfmon messages muted
2019-09-16 21:29:54 (1026410): Guest Log: ---- find pandaID.out ----
2019-09-16 21:29:54 (1026410): Guest Log: total 56
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------.  1 atlas atlas 11357 Jul 25 14:38 LICENSE
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------.  1 atlas atlas    20 Sep  9 11:04 MANIFEST.IN
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------.  1 atlas atlas    11 Sep 16 19:17 pandaIDs.out
2019-09-16 21:29:54 (1026410): Guest Log: drwx------. 14 atlas atlas   216 Sep 16 19:17 pilot
2019-09-16 21:29:54 (1026410): Guest Log: -rwx------.  1 atlas atlas 20136 Sep  9 11:04 pilot.py
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------.  1 atlas atlas     9 Sep  9 11:04 PILOTVERSION
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------.  1 atlas atlas  2251 Jul 25 14:38 README.md
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------.  1 atlas atlas   760 Aug 22 09:01 setup.py
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------.  1 atlas atlas   221 Jul 25 14:38 TODO.md
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas 11 Sep 16 19:17 /home/atlas/RunAtlas/pilot2/pandaIDs.out
2019-09-16 21:29:54 (1026410): Guest Log: 4002876565
2019-09-16 21:29:54 (1026410): Guest Log: 2019-09-16 19:29:54 UTC [wrapper] Test setup, not cleaning
2019-09-16 21:29:54 (1026410): Guest Log: 2019-09-16 19:29:54 UTC [wrapper] ==== wrapper stdout END ====
2019-09-16 21:29:54 (1026410): Guest Log: 2019-09-16 19:29:54 UTC [wrapper] ==== wrapper stderr END ====
2019-09-16 21:29:54 (1026410): Guest Log: 2019-09-16 19:29:54 UTC [wrapper] wrapper wrapperexiting ec=0, duration=744
2019-09-16 21:29:54 (1026410): Guest Log: 2019-09-16 19:29:54 UTC [wrapper] apfmon messages muted
2019-09-16 21:29:54 (1026410): Guest Log:  *** Error codes and diagnostics ***
2019-09-16 21:29:54 (1026410): Guest Log:     "exeErrorCode": 0,
2019-09-16 21:29:54 (1026410): Guest Log:     "exeErrorDiag": "",
2019-09-16 21:29:54 (1026410): Guest Log:     "pilotErrorCode": 0,
2019-09-16 21:29:54 (1026410): Guest Log:     "pilotErrorDiag": "",
2019-09-16 21:29:54 (1026410): Guest Log:  *** Listing of results directory ***
2019-09-16 21:29:54 (1026410): Guest Log: total 22592
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas  259319 Sep 16 09:27 pilot2.tar.gz
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas    4480 Sep 16 09:30 queuedata.json
2019-09-16 21:29:54 (1026410): Guest Log: -rwx------. 1 atlas atlas   12641 Sep 16 09:32 runpilot2-wrapper.sh
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas    2948 Sep 16 09:32 pandaJobData.out
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas  267443 Sep 16 19:15 input.tar.gz
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas     815 Sep 16 19:15 RTE.tar.gz
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas    8465 Sep 16 19:15 start_atlas.sh
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas    6262 Sep 16 19:15 init_data.xml
2019-09-16 21:29:54 (1026410): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Sep 16 19:15 EVNT.14296418._001447.pool.root.1 -> /data/./ATLAS.root_0
2019-09-16 21:29:54 (1026410): Guest Log: drwxr-xr-x. 3 atlas atlas      17 Sep 16 19:17 APPS
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas     240 Sep 16 19:17 setup.sh.local
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas 4060517 Sep 16 19:17 agis_schedconf.cvmfs.json
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas 7568796 Sep 16 19:17 agis_ddmendpoints.json
2019-09-16 21:29:54 (1026410): Guest Log: drwx------. 3 atlas atlas     229 Sep 16 19:17 pilot2
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas 9091346 Sep 16 19:28 HITS.000649-399038-14814._078090.pool.root.1
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas     833 Sep 16 19:29 memory_monitor_summary.json
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas  709337 Sep 16 19:29 log.000649-399038-14814._078090.job.log.tgz.1
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas   11012 Sep 16 19:29 heartbeat.json
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas    9597 Sep 16 19:29 pilotlog.txt
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas  161099 Sep 16 19:29 log.14568781._078090.job.log.1
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas     504 Sep 16 19:29 1UJLDmMY2TvnShfckohDCDFpABFKDmABFKDmQ6FKDmrEFKDmUBAapn.diag
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas    7769 Sep 16 19:29 runtime_log.err
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas     496 Sep 16 19:29 output.list
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 atlas atlas     717 Sep 16 19:29 runtime_log
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas  890880 Sep 16 19:29 result.tar.gz
2019-09-16 21:29:54 (1026410): Guest Log: Looking for outputfile HITS.000649-399038-14814._078090.pool.root.1
2019-09-16 21:29:54 (1026410): Guest Log: HITS file was successfully produced
2019-09-16 21:29:54 (1026410): Guest Log: -rw-------. 1 atlas atlas 9091346 Sep 16 19:28 /home/atlas/RunAtlas/HITS.000649-399038-14814._078090.pool.root.1
2019-09-16 21:29:54 (1026410): Guest Log: Successfully finished the ATLAS job!
2019-09-16 21:29:54 (1026410): Guest Log: Copying the results back to the shared directory!
2019-09-16 21:29:54 (1026410): Guest Log:  *** Contents of shared directory: ***
2019-09-16 21:29:54 (1026410): Guest Log: total 366732
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 root root 365251149 Sep 16 19:15 ATLAS.root_0
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 root root   9091346 Sep 16 19:28 HITS.pool.root.1
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 root root      6262 Sep 16 19:15 init_data.xml
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 root root    267443 Sep 16 19:15 input.tar.gz
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 root root    890880 Sep 16 19:29 result.tar.gz
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 root root       815 Sep 16 19:15 RTE.tar.gz
2019-09-16 21:29:54 (1026410): Guest Log: -rw-r--r--. 1 root root      8465 Sep 16 19:15 start_atlas.sh
2019-09-16 21:29:54 (1026410): Guest Log:  *** Success! Shutting down the machine. ***
2019-09-16 21:29:54 (1026410): VM Completion File Detected.
2019-09-16 21:29:54 (1026410): Powering off VM.
2019-09-16 21:29:54 (1026410): Successfully stopped VM.
2019-09-16 21:29:54 (1026410): Deregistering VM. (boinc_8e04fb0944695ebc, slot#0)
2019-09-16 21:29:54 (1026410): Removing network bandwidth throttle group from VM.
2019-09-16 21:29:55 (1026410): Removing storage controller(s) from VM.
2019-09-16 21:29:55 (1026410): Removing VM from VirtualBox.
2019-09-16 21:29:55 (1026410): Removing virtual disk drive from VirtualBox.
21:30:00 (1026410): called boinc_finish(0)

</stderr_txt>
]]>


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