Stderr output

<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
2019-09-16 23:02:52 (1160980): vboxwrapper (7.7.26197): starting
2019-09-16 23:02:53 (1160980): Feature: Checkpoint interval offset (394 seconds)
2019-09-16 23:02:53 (1160980): Detected: VirtualBox VboxManage Interface (Version: 6.0.12)
2019-09-16 23:02:53 (1160980): Detected: Minimum checkpoint interval (900.000000 seconds)
2019-09-16 23:02:53 (1160980): Successfully copied 'init_data.xml' to the shared directory.
2019-09-16 23:02:53 (1160980): Create VM. (boinc_1f6457688152f7b3, slot#0)
2019-09-16 23:02:53 (1160980): Setting Memory Size for VM. (6600MB)
2019-09-16 23:02:53 (1160980): Setting CPU Count for VM. (4)
2019-09-16 23:02:53 (1160980): Setting Chipset Options for VM.
2019-09-16 23:02:53 (1160980): Setting Boot Options for VM.
2019-09-16 23:02:53 (1160980): Setting Network Configuration for NAT.
2019-09-16 23:02:53 (1160980): Enabling VM Network Access.
2019-09-16 23:02:53 (1160980): Disabling USB Support for VM.
2019-09-16 23:02:53 (1160980): Disabling COM Port Support for VM.
2019-09-16 23:02:54 (1160980): Disabling LPT Port Support for VM.
2019-09-16 23:02:54 (1160980): Disabling Audio Support for VM.
2019-09-16 23:02:54 (1160980): Disabling Clipboard Support for VM.
2019-09-16 23:02:54 (1160980): Disabling Drag and Drop Support for VM.
2019-09-16 23:02:54 (1160980): Adding storage controller(s) to VM.
2019-09-16 23:02:54 (1160980): Adding virtual disk drive to VM. (vm_image.vdi)
2019-09-16 23:02:54 (1160980): Adding VirtualBox Guest Additions to VM.
2019-09-16 23:02:54 (1160980): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-09-16 23:02:54 (1160980): forwarding host port 63694 to guest port 80
2019-09-16 23:02:54 (1160980): Enabling remote desktop for VM.
2019-09-16 23:02:54 (1160980): Required extension pack not installed, remote desktop not enabled.
2019-09-16 23:02:54 (1160980): Enabling shared directory for VM.
2019-09-16 23:02:54 (1160980): Starting VM. (boinc_1f6457688152f7b3, slot#0)
2019-09-16 23:02:55 (1160980): Successfully started VM. (PID = '1161456')
2019-09-16 23:02:55 (1160980): Reporting VM Process ID to BOINC.
2019-09-16 23:02:55 (1160980): Guest Log: BIOS: VirtualBox 6.0.12
2019-09-16 23:02:55 (1160980): Guest Log: CPUID EDX: 0x178bfbff
2019-09-16 23:02:55 (1160980): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63
2019-09-16 23:02:55 (1160980): VM state change detected. (old = 'poweroff', new = 'running')
2019-09-16 23:02:55 (1160980): Detected: Web Application Enabled (http://localhost:63694)
2019-09-16 23:02:56 (1160980): Preference change detected
2019-09-16 23:02:56 (1160980): Setting CPU throttle for VM. (100%)
2019-09-16 23:02:56 (1160980): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2019-09-16 23:02:58 (1160980): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-09-16 23:02:58 (1160980): Guest Log: BIOS: Booting from Hard Disk...
2019-09-16 23:03:00 (1160980): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-09-16 23:03:00 (1160980): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2019-09-16 23:03:00 (1160980): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2019-09-16 23:03:03 (1160980): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-09-16 23:03:03 (1160980): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-09-16 23:03:07 (1160980): Guest Log: Checking CVMFS...
2019-09-16 23:03:07 (1160980): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.000223 main     Log opened 2019-09-16T23:03:05.822500000Z
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.000316 main     OS Product: Linux
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.000341 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.000359 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.000376 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.000377 main     Process ID: 1487
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.000377 main     Package type: LINUX_64BITS_GENERIC
2019-09-16 23:03:07 (1160980): Guest Log: 00:00:00.001628 main     5.2.32 r132073 started. Verbose level = 0
2019-09-16 23:03:09 (1160980): Guest Log: CVMFS is ok
2019-09-16 23:03:09 (1160980): Guest Log: Mounting shared directory
2019-09-16 23:03:09 (1160980): Guest Log: Copying input files
2019-09-16 23:03:10 (1160980): Guest Log: Copied input files into RunAtlas.
2019-09-16 23:03:11 (1160980): Guest Log: copied the webapp to /var/www
2019-09-16 23:03:11 (1160980): Guest Log: set up http_proxy http://pcoslo5:3128
2019-09-16 23:03:11 (1160980): Guest Log: Detected squid proxy http://pcoslo5:3128 - will set in /etc/cvmfs/default.local
2019-09-16 23:03:17 (1160980): Guest Log: 00:00:10.005461 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 271 779 000ns (GuestNow=1 568 667 797 554 463 000 ns GuestLast=1 568 674 985 826 242 000 ns fSetTimeLastLoop=true )
2019-09-16 23:05:15 (1160980): Guest Log: ATHENA_PROC_NUMBER=4
2019-09-16 23:05:15 (1160980): Guest Log:  *** Starting ATLAS job. (PandaID=4002876565 taskID=000649-4) ***
2019-09-16 23:08:51 (1160980): Guest Log:  *** Job finished ***
2019-09-16 23:08:51 (1160980): Guest Log:  *** The last 20 lines of the pilot log: ***
2019-09-16 23:08:51 (1160980): Guest Log: 2019-09-16 21:08:51 UTC [wrapper] apfmon messages muted
2019-09-16 23:08:51 (1160980): Guest Log: ---- find pandaID.out ----
2019-09-16 23:08:51 (1160980): Guest Log: total 56
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------.  1 atlas atlas 11357 Jul 25 14:38 LICENSE
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------.  1 atlas atlas    20 Sep  9 11:04 MANIFEST.IN
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------.  1 atlas atlas    11 Sep 16 21:05 pandaIDs.out
2019-09-16 23:08:51 (1160980): Guest Log: drwx------. 14 atlas atlas   216 Sep 16 21:05 pilot
2019-09-16 23:08:51 (1160980): Guest Log: -rwx------.  1 atlas atlas 20136 Sep  9 11:04 pilot.py
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------.  1 atlas atlas     9 Sep  9 11:04 PILOTVERSION
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------.  1 atlas atlas  2251 Jul 25 14:38 README.md
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------.  1 atlas atlas   760 Aug 22 09:01 setup.py
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------.  1 atlas atlas   221 Jul 25 14:38 TODO.md
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas 11 Sep 16 21:05 /home/atlas/RunAtlas/pilot2/pandaIDs.out
2019-09-16 23:08:51 (1160980): Guest Log: 4002876565
2019-09-16 23:08:51 (1160980): Guest Log: 2019-09-16 21:08:51 UTC [wrapper] Test setup, not cleaning
2019-09-16 23:08:51 (1160980): Guest Log: 2019-09-16 21:08:51 UTC [wrapper] ==== wrapper stdout END ====
2019-09-16 23:08:51 (1160980): Guest Log: 2019-09-16 21:08:51 UTC [wrapper] ==== wrapper stderr END ====
2019-09-16 23:08:51 (1160980): Guest Log: 2019-09-16 21:08:51 UTC [wrapper] wrapper wrapperexiting ec=0, duration=216
2019-09-16 23:08:51 (1160980): Guest Log: 2019-09-16 21:08:51 UTC [wrapper] apfmon messages muted
2019-09-16 23:08:51 (1160980): Guest Log:  *** Error codes and diagnostics ***
2019-09-16 23:08:51 (1160980): Guest Log:     "exeErrorCode": 65,
2019-09-16 23:08:51 (1160980): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2019-09-16 23:08:51 (1160980): Guest Log:     "pilotErrorCode": 0,
2019-09-16 23:08:51 (1160980): Guest Log:     "pilotErrorDiag": "",
2019-09-16 23:08:51 (1160980): Guest Log:  *** Listing of results directory ***
2019-09-16 23:08:51 (1160980): Guest Log: total 12408
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas  259319 Sep 16 09:27 pilot2.tar.gz
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas    4480 Sep 16 09:30 queuedata.json
2019-09-16 23:08:51 (1160980): Guest Log: -rwx------. 1 atlas atlas   12641 Sep 16 09:34 runpilot2-wrapper.sh
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas    2948 Sep 16 09:34 pandaJobData.out
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas  267436 Sep 16 21:03 input.tar.gz
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas     815 Sep 16 21:03 RTE.tar.gz
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas    8505 Sep 16 21:03 start_atlas.sh
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas    6262 Sep 16 21:03 init_data.xml
2019-09-16 23:08:51 (1160980): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Sep 16 21:03 EVNT.14296418._001447.pool.root.1 -> /data/./ATLAS.root_0
2019-09-16 23:08:51 (1160980): Guest Log: drwxr-xr-x. 3 atlas atlas      17 Sep 16 21:05 APPS
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas     240 Sep 16 21:05 setup.sh.local
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas 4060557 Sep 16 21:05 agis_schedconf.cvmfs.json
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas 7568796 Sep 16 21:05 agis_ddmendpoints.json
2019-09-16 23:08:51 (1160980): Guest Log: drwx------. 3 atlas atlas     229 Sep 16 21:05 pilot2
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas     820 Sep 16 21:07 memory_monitor_summary.json
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas   75722 Sep 16 21:07 log.000649-400400-11882._078090.job.log.tgz.1
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas    7861 Sep 16 21:07 heartbeat.json
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas   13000 Sep 16 21:08 pilotlog.txt
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas  130886 Sep 16 21:08 log.14568781._078090.job.log.1
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas     498 Sep 16 21:08 wmrLDmHa2TvnShfckohDCDFpABFKDmABFKDmLRtKDmABFKDmOrloYn.diag
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas    7664 Sep 16 21:08 runtime_log.err
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas     263 Sep 16 21:08 output.list
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 atlas atlas     717 Sep 16 21:08 runtime_log
2019-09-16 23:08:51 (1160980): Guest Log: -rw-------. 1 atlas atlas  225280 Sep 16 21:08 result.tar.gz
2019-09-16 23:08:51 (1160980): Guest Log: Looking for outputfile HITS.000649-400400-11882._078090.pool.root.1
2019-09-16 23:08:51 (1160980): Guest Log: No HITS file was produced
2019-09-16 23:08:51 (1160980): Guest Log: Successfully finished the ATLAS job!
2019-09-16 23:08:51 (1160980): Guest Log: Copying the results back to the shared directory!
2019-09-16 23:08:51 (1160980): Guest Log:  *** Contents of shared directory: ***
2019-09-16 23:08:51 (1160980): Guest Log: total 357200
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 root root 365251149 Sep 16 21:02 ATLAS.root_0
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 root root      6262 Sep 16 21:02 init_data.xml
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 root root    267436 Sep 16 21:02 input.tar.gz
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 root root    225280 Sep 16 21:08 result.tar.gz
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 root root       815 Sep 16 21:02 RTE.tar.gz
2019-09-16 23:08:51 (1160980): Guest Log: -rw-r--r--. 1 root root      8505 Sep 16 21:02 start_atlas.sh
2019-09-16 23:08:51 (1160980): Guest Log:  *** Success! Shutting down the machine. ***
2019-09-16 23:08:51 (1160980): VM Completion File Detected.
2019-09-16 23:08:51 (1160980): Powering off VM.
2019-09-16 23:08:51 (1160980): Successfully stopped VM.
2019-09-16 23:08:51 (1160980): Deregistering VM. (boinc_1f6457688152f7b3, slot#0)
2019-09-16 23:08:51 (1160980): Removing network bandwidth throttle group from VM.
2019-09-16 23:08:51 (1160980): Removing storage controller(s) from VM.
2019-09-16 23:08:52 (1160980): Removing VM from VirtualBox.
2019-09-16 23:08:52 (1160980): Removing virtual disk drive from VirtualBox.
23:08:57 (1160980): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN