Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-09-23 16:24:09 (4072): Detected: vboxwrapper 26197
2019-09-23 16:24:09 (4072): Detected: BOINC client v7.7
2019-09-23 16:24:09 (4072): Detected: VirtualBox VboxManage Interface (Version: 6.0.8)
2019-09-23 16:24:10 (4072): Successfully copied 'init_data.xml' to the shared directory.
2019-09-23 16:24:11 (4072): Create VM. (boinc_3a8b9de993d67973, slot#14)
2019-09-23 16:24:11 (4072): Setting Memory Size for VM. (6600MB)
2019-09-23 16:24:12 (4072): Setting CPU Count for VM. (4)
2019-09-23 16:24:12 (4072): Setting Chipset Options for VM.
2019-09-23 16:24:12 (4072): Setting Boot Options for VM.
2019-09-23 16:24:12 (4072): Setting Network Configuration for NAT.
2019-09-23 16:24:13 (4072): Enabling VM Network Access.
2019-09-23 16:24:13 (4072): Disabling USB Support for VM.
2019-09-23 16:24:13 (4072): Disabling COM Port Support for VM.
2019-09-23 16:24:13 (4072): Disabling LPT Port Support for VM.
2019-09-23 16:24:14 (4072): Disabling Audio Support for VM.
2019-09-23 16:24:14 (4072): Disabling Clipboard Support for VM.
2019-09-23 16:24:14 (4072): Disabling Drag and Drop Support for VM.
2019-09-23 16:24:15 (4072): Adding storage controller(s) to VM.
2019-09-23 16:24:15 (4072): Adding virtual disk drive to VM. (vm_image.vdi)
2019-09-23 16:24:15 (4072): Adding VirtualBox Guest Additions to VM.
2019-09-23 16:24:16 (4072): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-09-23 16:24:16 (4072): forwarding host port 65534 to guest port 80
2019-09-23 16:24:16 (4072): Enabling remote desktop for VM.
2019-09-23 16:24:17 (4072): Enabling shared directory for VM.
2019-09-23 16:24:17 (4072): Starting VM using VBoxManage interface. (boinc_3a8b9de993d67973, slot#14)
2019-09-23 16:24:21 (4072): Successfully started VM. (PID = '3816')
2019-09-23 16:24:21 (4072): Reporting VM Process ID to BOINC.
2019-09-23 16:24:21 (4072): Guest Log: BIOS: VirtualBox 6.0.8

2019-09-23 16:24:21 (4072): Guest Log: CPUID EDX: 0x178bfbff

2019-09-23 16:24:21 (4072): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63

2019-09-23 16:24:21 (4072): VM state change detected. (old = 'PoweredOff', new = 'Running')
2019-09-23 16:24:21 (4072): Detected: Web Application Enabled (http://localhost:65534)
2019-09-23 16:24:21 (4072): Detected: Remote Desktop Enabled (localhost:49152)
2019-09-23 16:24:21 (4072): Preference change detected
2019-09-23 16:24:21 (4072): Setting CPU throttle for VM. (100%)
2019-09-23 16:24:21 (4072): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2019-09-23 16:24:23 (4072): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-09-23 16:24:23 (4072): Guest Log: BIOS: Booting from Hard Disk...

2019-09-23 16:24:26 (4072): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-09-23 16:24:26 (4072): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f

2019-09-23 16:24:26 (4072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f

2019-09-23 16:24:33 (4072): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-09-23 16:24:33 (4072): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-09-23 16:24:36 (4072): Guest Log: Checking CVMFS...

2019-09-23 16:24:45 (4072): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.000195 main     Log opened 2019-09-23T16:24:43.155654000Z

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.000331 main     OS Product: Linux

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.000423 main     OS Release: 3.10.0-957.27.2.el7.x86_64

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.000474 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.000535 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.000537 main     Process ID: 1818

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.000538 main     Package type: LINUX_64BITS_GENERIC

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.001969 main     5.2.32 r132073 started. Verbose level = 0

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.004451 main     Error: Service 'control' failed to initialize: VERR_INVALID_FUNCTION

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.004626 main     Session 0 is about to close ...

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.004678 main     Stopping all guest processes ...

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.004727 main     Closing all guest files ...

2019-09-23 16:24:45 (4072): Guest Log: 00:00:00.005601 main     Ended.

2019-09-23 16:24:46 (4072): Guest Log: CVMFS is ok

2019-09-23 16:24:47 (4072): Guest Log: Mounting shared directory

2019-09-23 16:24:47 (4072): Guest Log: Copying input files

2019-09-23 16:24:50 (4072): Guest Log: Copied input files into RunAtlas.

2019-09-23 16:24:51 (4072): Guest Log: copied the webapp to /var/www

2019-09-23 16:24:51 (4072): Guest Log: This vm does not need to setup an http proxy

2019-09-23 16:24:51 (4072): Guest Log: ATHENA_PROC_NUMBER=4

2019-09-23 16:24:51 (4072): Guest Log:  *** Starting ATLAS job. (PandaID=4487189247 taskID=19000550) ***

2019-09-23 16:38:29 (4072): Guest Log:  *** Job finished ***

2019-09-23 16:38:29 (4072): Guest Log:  *** The last 20 lines of the pilot log: ***

2019-09-23 16:38:29 (4072): Guest Log: -rw-------.  1 atlas atlas 11357 Jul 25 14:38 LICENSE

2019-09-23 16:38:29 (4072): Guest Log: -rw-------.  1 atlas atlas    20 Sep  9 11:04 MANIFEST.IN

2019-09-23 16:38:29 (4072): Guest Log: -rw-------.  1 atlas atlas    11 Sep 23 16:25 pandaIDs.out

2019-09-23 16:38:29 (4072): Guest Log: drwx------. 14 atlas atlas   216 Sep 23 16:25 pilot

2019-09-23 16:38:29 (4072): Guest Log: -rwx------.  1 atlas atlas 20136 Sep  9 11:04 pilot.py

2019-09-23 16:38:29 (4072): Guest Log: -rw-------.  1 atlas atlas     9 Sep  9 11:04 PILOTVERSION

2019-09-23 16:38:29 (4072): Guest Log: -rw-------.  1 atlas atlas  2251 Jul 25 14:38 README.md

2019-09-23 16:38:29 (4072): Guest Log: -rw-------.  1 atlas atlas   760 Aug 22 09:01 setup.py

2019-09-23 16:38:29 (4072): Guest Log: -rw-------.  1 atlas atlas   221 Jul 25 14:38 TODO.md

2019-09-23 16:38:29 (4072): Guest Log: 2019-09-23 16:38:27 UTC [wrapper] pandaIDs.out files:

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas 11 Sep 23 16:25 /home/atlas/RunAtlas/pilot2/pandaIDs.out

2019-09-23 16:38:29 (4072): Guest Log: 2019-09-23 16:38:27 UTC [wrapper] pandaIDs.out content:

2019-09-23 16:38:29 (4072): Guest Log: 4487189247

2019-09-23 16:38:29 (4072): Guest Log: 2019-09-23 16:38:27 UTC [wrapper] Test setup, not cleaning

2019-09-23 16:38:29 (4072): Guest Log: 2019-09-23 16:38:27 UTC [wrapper] ==== wrapper stdout END ====

2019-09-23 16:38:29 (4072): Guest Log: 2019-09-23 16:38:27 UTC [wrapper] ==== wrapper stderr END ====

2019-09-23 16:38:29 (4072): Guest Log: 2019-09-23 16:38:27 UTC [wrapper] wrapper wrapperexiting ec=0, duration=818

2019-09-23 16:38:29 (4072): Guest Log: 2019-09-23 16:38:27 UTC [wrapper] apfmon messages muted

2019-09-23 16:38:29 (4072): Guest Log:  *** Error codes and diagnostics ***

2019-09-23 16:38:29 (4072): Guest Log:     "exeErrorCode": 65,

2019-09-23 16:38:29 (4072): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",

2019-09-23 16:38:29 (4072): Guest Log:     "pilotErrorCode": 0,

2019-09-23 16:38:29 (4072): Guest Log:     "pilotErrorDiag": "",

2019-09-23 16:38:29 (4072): Guest Log:  *** Listing of results directory ***

2019-09-23 16:38:29 (4072): Guest Log: total 12452

2019-09-23 16:38:29 (4072): Guest Log: -rwxr-xr-x. 1 atlas atlas   10304 Sep 23 16:24 init_data.xml

2019-09-23 16:38:29 (4072): Guest Log: -rwxr-xr-x. 1 atlas atlas  267500 Sep 23 16:24 input.tar.gz

2019-09-23 16:38:29 (4072): Guest Log: -rwxr-xr-x. 1 atlas atlas     815 Sep 23 16:24 RTE.tar.gz

2019-09-23 16:38:29 (4072): Guest Log: -rwxr-xr-x. 1 atlas atlas    8659 Sep 23 16:24 start_atlas.sh

2019-09-23 16:38:29 (4072): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Sep 23 16:24 EVNT.18605582._000231.pool.root.1 -> /data/./ATLAS.root_0

2019-09-23 16:38:29 (4072): Guest Log: drwxr-xr-x. 3 atlas atlas      17 Sep 23 16:24 APPS

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas 4053335 Sep 23 16:25 agis_schedconf.cvmfs.json

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas 7578835 Sep 23 16:25 agis_ddmendpoints.json

2019-09-23 16:38:29 (4072): Guest Log: drwx------. 3 atlas atlas     229 Sep 23 16:25 pilot2

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas     829 Sep 23 16:37 memory_monitor_summary.json

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas   81587 Sep 23 16:37 log.19000550._012541.job.log.tgz.1

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas    7905 Sep 23 16:37 heartbeat.json

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas   11197 Sep 23 16:38 pilotlog.txt

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas  149933 Sep 23 16:38 log.19000550._012541.job.log.1

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas     489 Sep 23 16:38 25ENDmwemWvnShfckohDCDFpABFKDmABFKDmFzHPDmABFKDmtvZVum.diag

2019-09-23 16:38:29 (4072): Guest Log: -rw-r--r--. 1 atlas atlas    6963 Sep 23 16:38 runtime_log.err

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas     241 Sep 23 16:38 output.list

2019-09-23 16:38:29 (4072): Guest Log: -rw-r--r--. 1 atlas atlas     692 Sep 23 16:38 runtime_log

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas  245760 Sep 23 16:38 result.tar.gz

2019-09-23 16:38:29 (4072): Guest Log: -rw-r--r--. 1 atlas atlas  259319 Sep 23  2019 pilot2.tar.gz

2019-09-23 16:38:29 (4072): Guest Log: -rw-------. 1 atlas atlas    2867 Sep 23  2019 pandaJobData.out

2019-09-23 16:38:29 (4072): Guest Log: -rwx------. 1 atlas atlas   12762 Sep 23  2019 runpilot2-wrapper.sh

2019-09-23 16:38:29 (4072): Guest Log: -rw-r--r--. 1 atlas atlas    4480 Sep 23  2019 queuedata.json

2019-09-23 16:38:29 (4072): Guest Log: Looking for outputfile HITS.19000550._012541.pool.root.1

2019-09-23 16:38:29 (4072): Guest Log: No HITS file was produced

2019-09-23 16:38:29 (4072): Guest Log: Successfully finished the ATLAS job!

2019-09-23 16:38:29 (4072): Guest Log: Copying the results back to the shared directory!

2019-09-23 16:38:30 (4072): Guest Log:  *** Contents of shared directory: ***

2019-09-23 16:38:30 (4072): Guest Log: total 219480

2019-09-23 16:38:30 (4072): Guest Log: -rwxrwxrwx. 1 root root 224202331 Sep 23  2019 ATLAS.root_0

2019-09-23 16:38:30 (4072): Guest Log: -rwxrwxrwx. 1 root root     10304 Sep 23  2019 init_data.xml

2019-09-23 16:38:30 (4072): Guest Log: -rwxrwxrwx. 1 root root    267500 Sep 23  2019 input.tar.gz

2019-09-23 16:38:30 (4072): Guest Log: -rwxrwxrwx. 1 root root    245760 Sep 23  2019 result.tar.gz

2019-09-23 16:38:30 (4072): Guest Log: -rwxrwxrwx. 1 root root       815 Sep 23  2019 RTE.tar.gz

2019-09-23 16:38:30 (4072): Guest Log: -rwxrwxrwx. 1 root root      8659 Sep 23  2019 start_atlas.sh

2019-09-23 16:38:30 (4072): Guest Log:  *** Success! Shutting down the machine. ***

2019-09-23 16:38:30 (4072): VM Completion File Detected.
2019-09-23 16:38:30 (4072): Powering off VM.
2019-09-23 16:43:31 (4072): VM did not power off when requested.
2019-09-23 16:43:31 (4072): VM was successfully terminated.
2019-09-23 16:43:31 (4072): Deregistering VM. (boinc_3a8b9de993d67973, slot#14)
2019-09-23 16:43:31 (4072): Removing network bandwidth throttle group from VM.
2019-09-23 16:43:31 (4072): Removing VM from VirtualBox.
16:43:37 (4072): called boinc_finish(0)

</stderr_txt>
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