Name | CcCNDmt4bVvnShfckohDCDFpABFKDmABFKDm0oTNDmABFKDmfqmW6m_1 |
Workunit | 1940016 |
Created | 25 Sep 2019, 17:26:12 UTC |
Sent | 26 Sep 2019, 7:37:01 UTC |
Report deadline | 3 Oct 2019, 7:37:01 UTC |
Received | 26 Sep 2019, 11:21:10 UTC |
Server state | Over |
Outcome | Validate error |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 8 min 2 sec |
CPU time | 2 min 59 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 11.64 GFLOPS |
Application version | ATLAS Simulation v0.73 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.56 GB |
Peak swap size | 2.26 GB |
Peak disk usage | 536.12 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 12:59:34 (28722): wrapper (7.7.26015): starting 12:59:34 (28722): wrapper: running run_atlas (--nthreads 4) 2019-09-26 12:59:35,056: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-09-26 12:59:35,056: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-09-26 12:59:35,057: THREADS=4 2019-09-26 12:59:35,059: Checking for CVMFS 2019-09-26 12:59:40,798: CVMFS is installed 2019-09-26 12:59:40,799: Checking Singularity... 2019-09-26 12:59:40,906: Singularity is installed, version singularity version 3.2.1-1 2019-09-26 12:59:40,906: Testing the function of Singularity... 2019-09-26 12:59:40,907: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-09-26 12:59:41,244: Singularity Works... 2019-09-26 12:59:41,245: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-09-26 12:59:41,922: copy /home/grid/slots/0/shared/input.tar.gz 2019-09-26 12:59:41,923: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-09-26 12:59:41,924: copy /home/grid/slots/0/shared/start_atlas.sh 2019-09-26 12:59:41,924: export ATHENA_PROC_NUMBER=4; 2019-09-26 12:59:42,227: start atlas job with PandaID=4484649086 2019-09-26 12:59:42,227: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-09-26 13:07:34,224: running cmd return value is 0 2019-09-26 13:07:34,228: *****************The last 100 lines of the pilot log****************** 2019-09-26 13:07:34,263: 2019-09-26 11:07:10,537 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 5783 2019-09-26 11:07:10,537 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-09-26 11:07:10,537 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-09-26 11:07:10,537 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-09-26 11:07:10,537 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-09-26 11:07:10,537 | INFO | retrieve | pilot.control.job | has_job_completed | job 4484649086 has completed 2019-09-26 11:07:10,538 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-09-26 11:07:10,541 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4484649086 2019-09-26 11:07:11,543 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [5783] 2019-09-26 11:07:11,543 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 5783 2019-09-26 11:07:11,544 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-09-26 11:07:12,549 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-09-26 11:07:12,549 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=5783 2019-09-26 11:07:12,638 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [5783] (in reverse order) 2019-09-26 11:07:12,696 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-09-26 11:07:12,696 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-09-26 11:07:12,696 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-09-26 11:07:12,697 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-09-26 11:07:12,705 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-26 11:07:12,705 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) *** 2019-09-26 11:07:12,705 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-26 11:07:12,705 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-09-26 11:07:12,706 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM 2019-09-26 11:07:12,706 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-09-26 11:07:12,860 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch Distributor ID: ScientificCERNSLC Description: Scientific Linux CERN SLC release 6.10 (Carbon) Release: 6.10 Codename: Carbon 2019-09-26 11:07:12,860 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-26 11:07:13,362 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-09-26 11:07:13,393 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (10537140224 B) 2019-09-26 11:07:13,393 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-09-26 11:07:13,394 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-09-26 11:07:13,415 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-09-26 11:07:13,416 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-09-26 11:07:13,437 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-09-26 11:07:13,449 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-09-26 11:07:13,556 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-09-26 11:07:13,557 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-09-26 11:07:13,657 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-09-26 11:07:13,662 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-09-26 11:07:13,662 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140419852621568)>, <ExcThread(job, started 140419636348672)>, <ExcThread(validate, started 140419627955968)>, <ExcThread(queue_monitoring, started 140419367159552)>, <ExcThread(failed_post, started 140418788357888)>, <ExcThread(execute_payloads, started 140418779965184)>, <ExcThread(job_monitor, started 140418771572480)>, <ExcThread(queue_monitor, started 140418763179776)>, <ExcThread(data, started 140419619563264)>, <ExcThread(validate_pre, started 140419350374144)>, <ExcThread(copytool_out, started 140419383944960)>] 2019-09-26 11:07:13,818 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-09-26 11:07:13,894 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-09-26 11:07:13,964 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-09-26 11:07:13,964 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140419852621568)>, <ExcThread(job, started 140419636348672)>, <ExcThread(validate, started 140419627955968)>, <ExcThread(queue_monitoring, started 140419367159552)>, <ExcThread(failed_post, started 140418788357888)>, <ExcThread(job_monitor, started 140418771572480)>, <ExcThread(queue_monitor, started 140418763179776)>, <ExcThread(data, started 140419619563264)>, <ExcThread(copytool_out, started 140419383944960)>] 2019-09-26 11:07:14,091 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-09-26 11:07:14,091 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-09-26 11:07:14,137 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-09-26 11:07:14,137 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-09-26 11:07:14,160 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-09-26 11:07:14,161 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140419852621568)>, <ExcThread(validate, started 140419627955968)>, <ExcThread(queue_monitoring, started 140419367159552)>, <ExcThread(failed_post, started 140418788357888)>, <ExcThread(job_monitor, started 140418771572480)>, <ExcThread(queue_monitor, started 140418763179776)>, <ExcThread(copytool_out, started 140419383944960)>] 2019-09-26 11:07:14,502 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-09-26 11:07:14,503 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-09-26 11:07:14,507 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-09-26 11:07:14,563 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-09-26 11:07:14,564 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140419852621568)>, <ExcThread(validate, started 140419627955968)>, <ExcThread(queue_monitoring, started 140419367159552)>, <ExcThread(job_monitor, started 140418771572480)>, <ExcThread(copytool_out, started 140419383944960)>] 2019-09-26 11:07:14,630 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-09-26 11:07:14,658 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-09-26 11:07:14,664 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-09-26 11:07:14,665 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140419852621568)>, <ExcThread(queue_monitoring, started 140419367159552)>, <ExcThread(job_monitor, started 140418771572480)>] 2019-09-26 11:07:14,846 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-09-26 11:07:17,848 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-09-26 11:07:17,886 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-09-26 11:07:17,887 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140419852621568)>, <ExcThread(job_monitor, started 140418771572480)>] 2019-09-26 11:07:33,604 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-09-26 11:07:33,605 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-09-26 11:07:33,695 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-09-26 11:07:33,696 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-09-26 11:07:33,696 | INFO | MainThread | root | wrap_up | pilot has finished 2019-09-26 11:07:33 UTC [wrapper] ==== pilot stdout END ==== 2019-09-26 11:07:33 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-09-26 11:07:33 UTC [wrapper] Pilot exit status: 0 2019-09-26 11:07:33 UTC [wrapper] STATUSCODE: 0 2019-09-26 11:07:33 UTC [wrapper] apfmon messages muted ---- find pandaIDs.out ---- total 56 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE -rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN -rw-------. 1 grid grid 11 Sep 26 13:00 pandaIDs.out drwx------. 14 grid grid 216 Sep 26 13:00 pilot -rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py -rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 760 Aug 22 11:01 setup.py -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-09-26 11:07:34 UTC [wrapper] pandaIDs.out files: -rw-------. 1 grid grid 11 Sep 26 13:00 /home/grid/slots/0/pilot2/pandaIDs.out 2019-09-26 11:07:34 UTC [wrapper] pandaIDs.out content: 4484649086 2019-09-26 11:07:34 UTC [wrapper] Test setup, not cleaning 2019-09-26 11:07:34 UTC [wrapper] ==== wrapper stdout END ==== 2019-09-26 11:07:34 UTC [wrapper] ==== wrapper stderr END ==== 2019-09-26 11:07:34 UTC [wrapper] wrapper wrapperexiting ec=0, duration=471 2019-09-26 11:07:34 UTC [wrapper] apfmon messages muted 2019-09-26 13:07:34,272: ***************diag file************ 2019-09-26 13:07:34,272: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=471.09s KernelTime=66.04s UserTime=178.75s CPUUsage=51% MaxResidentMemory=1882348kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=157059 MinorPageFaults=7028870 Swaps=0 ForcedSwitches=10330 WaitSwitches=1820138 Inputs=38415129 Outputs=34584 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-09-26 13:07:34,304: ******************************WorkDir*********************** 2019-09-26 13:07:34,304: total 279720 drwxrwx--x. 7 grid grid 4096 Sep 26 13:07 . drwxr-x--x. 7 grid grid 51 Sep 26 11:56 .. -rw-------. 1 grid grid 7579510 Sep 26 13:00 agis_ddmendpoints.json -rw-------. 1 grid grid 4044847 Sep 26 13:00 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Sep 26 12:59 .alrb drwxr-xr-x. 3 grid grid 17 Sep 26 12:59 APPS -rw-------. 1 grid grid 538 Sep 26 12:59 .asetup -rw-------. 1 grid grid 826 Sep 26 13:00 .asetup.save drwx------. 2 grid grid 6 Sep 26 13:00 .asetup-sysbin_2957 -rw-r--r--. 1 grid grid 0 Sep 26 12:59 boinc_lockfile -rw-r--r--. 1 grid grid 8192 Sep 26 13:07 boinc_mmap_file -rw-r--r--. 1 grid grid 533 Sep 26 13:05 boinc_task_state.xml -rw-------. 1 grid grid 507 Sep 26 13:07 CcCNDmt4bVvnShfckohDCDFpABFKDmABFKDm0oTNDmABFKDmfqmW6m.diag -rw-r--r--. 1 grid grid 273814177 Sep 26 12:59 EVNT.18605762._000084.pool.root.1 -rw-------. 1 grid grid 7766 Sep 26 13:07 heartbeat.json -rw-r--r--. 1 grid grid 5864 Sep 26 12:59 init_data.xml -rw-r--r--. 1 grid grid 267501 Sep 26 12:59 input.tar.gz -rw-r--r--. 1 grid grid 112 Sep 26 12:59 job.xml -rw-------. 1 grid grid 144293 Sep 26 13:07 log.19056259._004200.job.log.1 -rw-------. 1 grid grid 148194 Sep 26 13:06 log.19056259._004200.job.log.tgz.1 -rw-------. 1 grid grid 241 Sep 26 13:07 output.list -rw-------. 1 grid grid 2841 Sep 20 19:40 pandaJobData.out drwx------. 3 grid grid 229 Sep 26 13:00 pilot2 -rw-r--r--. 1 grid grid 259319 Sep 20 19:26 pilot2.tar.gz -rw-------. 1 grid grid 9857 Sep 26 13:07 pilotlog.txt -rw-r--r--. 1 grid grid 4480 Sep 20 19:40 queuedata.json -rw-r--r--. 1 grid grid 815 Sep 26 12:59 RTE.tar.gz -rwxr-xr-x. 1 grid grid 7941 Sep 26 12:59 run_atlas -rwx------. 1 grid grid 12762 Sep 20 19:40 runpilot2-wrapper.sh -rw-r--r--. 1 grid grid 692 Sep 26 13:07 runtime_log -rw-r--r--. 1 grid grid 6655 Sep 26 13:07 runtime_log.err drwxrwx--x. 2 grid grid 107 Sep 26 13:07 shared -rw-r--r--. 1 grid grid 8688 Sep 26 12:59 start_atlas.sh -rw-r--r--. 1 grid grid 16307 Sep 26 13:07 stderr.txt -rw-r--r--. 1 grid grid 107 Sep 26 12:59 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 grid grid 24 Sep 26 13:07 wrapper_checkpoint.txt 2019-09-26 13:07:34,304: running start_atlas return value is 0 2019-09-26 13:07:34,304: Parent exit 0 2019-09-26 13:07:34,306: child process exit 0 13:07:35 (28722): run_atlas exited; CPU time 179.183815 13:07:35 (28722): called boinc_finish(0) </stderr_txt> ]]>
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