Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-09-28 10:20:09 (9444): Detected: vboxwrapper 26197
2019-09-28 10:20:09 (9444): Detected: BOINC client v7.7
2019-09-28 10:20:09 (9444): Detected: VirtualBox VboxManage Interface (Version: 5.2.32)
2019-09-28 10:20:10 (9444): Successfully copied 'init_data.xml' to the shared directory.
2019-09-28 10:20:11 (9444): Create VM. (boinc_66cc8bd593a3cf3d, slot#3)
2019-09-28 10:20:12 (9444): Setting Memory Size for VM. (6750MB)
2019-09-28 10:20:12 (9444): Setting CPU Count for VM. (2)
2019-09-28 10:20:12 (9444): Setting Chipset Options for VM.
2019-09-28 10:20:13 (9444): Setting Boot Options for VM.
2019-09-28 10:20:13 (9444): Setting Network Configuration for NAT.
2019-09-28 10:20:13 (9444): Enabling VM Network Access.
2019-09-28 10:20:14 (9444): Disabling USB Support for VM.
2019-09-28 10:20:14 (9444): Disabling COM Port Support for VM.
2019-09-28 10:20:14 (9444): Disabling LPT Port Support for VM.
2019-09-28 10:20:15 (9444): Disabling Audio Support for VM.
2019-09-28 10:20:15 (9444): Disabling Clipboard Support for VM.
2019-09-28 10:20:15 (9444): Disabling Drag and Drop Support for VM.
2019-09-28 10:20:15 (9444): Adding storage controller(s) to VM.
2019-09-28 10:20:16 (9444): Adding virtual disk drive to VM. (vm_image.vdi)
2019-09-28 10:20:16 (9444): Adding VirtualBox Guest Additions to VM.
2019-09-28 10:20:16 (9444): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-09-28 10:20:17 (9444): forwarding host port 64828 to guest port 80
2019-09-28 10:20:17 (9444): Enabling remote desktop for VM.
2019-09-28 10:20:18 (9444): Enabling shared directory for VM.
2019-09-28 10:20:18 (9444): Starting VM using VBoxManage interface. (boinc_66cc8bd593a3cf3d, slot#3)
2019-09-28 10:20:23 (9444): Successfully started VM. (PID = '5700')
2019-09-28 10:20:23 (9444): Reporting VM Process ID to BOINC.
2019-09-28 10:20:23 (9444): Guest Log: BIOS: VirtualBox 5.2.32

2019-09-28 10:20:23 (9444): Guest Log: CPUID EDX: 0x178bfbff

2019-09-28 10:20:23 (9444): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63

2019-09-28 10:20:23 (9444): VM state change detected. (old = 'PoweredOff', new = 'Running')
2019-09-28 10:20:23 (9444): Detected: Web Application Enabled (http://localhost:64828)
2019-09-28 10:20:23 (9444): Detected: Remote Desktop Enabled (localhost:64829)
2019-09-28 10:20:23 (9444): Preference change detected
2019-09-28 10:20:23 (9444): Setting CPU throttle for VM. (95%)
2019-09-28 10:20:23 (9444): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2019-09-28 10:20:25 (9444): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-09-28 10:20:25 (9444): Guest Log: BIOS: Booting from Hard Disk...

2019-09-28 10:20:28 (9444): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-09-28 10:20:28 (9444): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f

2019-09-28 10:20:28 (9444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f

2019-09-28 10:20:34 (9444): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2019-09-28 10:20:34 (9444): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-09-28 10:20:37 (9444): Guest Log: Checking CVMFS...

2019-09-28 10:20:45 (9444): Guest Log: CVMFS is ok

2019-09-28 10:20:45 (9444): Guest Log: Mounting shared directory

2019-09-28 10:20:45 (9444): Guest Log: Copying input files

2019-09-28 10:20:46 (9444): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.000213 main     Log opened 2019-09-28T10:20:44.617575000Z

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.000355 main     OS Product: Linux

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.000433 main     OS Release: 3.10.0-957.27.2.el7.x86_64

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.000515 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.000552 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.000553 main     Process ID: 1830

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.000554 main     Package type: LINUX_64BITS_GENERIC

2019-09-28 10:20:46 (9444): Guest Log: 00:00:00.002057 main     5.2.32 r132073 started. Verbose level = 0

2019-09-28 10:20:53 (9444): Guest Log: Copied input files into RunAtlas.

2019-09-28 10:20:55 (9444): Guest Log: copied the webapp to /var/www

2019-09-28 10:20:55 (9444): Guest Log: This vm does not need to setup an http proxy

2019-09-28 10:20:55 (9444): Guest Log: ATHENA_PROC_NUMBER=2

2019-09-28 10:20:55 (9444): Guest Log:  *** Starting ATLAS job. (PandaID=4484649086 taskID=19056259) ***

2019-09-28 10:20:56 (9444): Guest Log: 00:00:10.004774 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 858 715 000ns (GuestNow=1 569 658 855 763 189 000 ns GuestLast=1 569 666 044 621 904 000 ns fSetTimeLastLoop=true )

2019-09-28 12:00:29 (9444): Status Report: Elapsed Time: '6000.000000'
2019-09-28 12:00:29 (9444): Status Report: CPU Time: '11445.734375'
2019-09-28 13:41:04 (9444): Status Report: Elapsed Time: '12000.000000'
2019-09-28 13:41:04 (9444): Status Report: CPU Time: '22994.453125'
2019-09-28 14:59:58 (9444): Preference change detected
2019-09-28 14:59:58 (9444): Setting CPU throttle for VM. (95%)
2019-09-28 14:59:58 (9444): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2019-09-28 15:21:23 (9444): Status Report: Elapsed Time: '18000.000000'
2019-09-28 15:21:23 (9444): Status Report: CPU Time: '34658.828125'
2019-09-28 17:01:41 (9444): Status Report: Elapsed Time: '24000.000000'
2019-09-28 17:01:41 (9444): Status Report: CPU Time: '45137.093750'
2019-09-28 18:41:59 (9444): Status Report: Elapsed Time: '30000.000000'
2019-09-28 18:41:59 (9444): Status Report: CPU Time: '55603.968750'
2019-09-28 20:22:18 (9444): Status Report: Elapsed Time: '36000.000000'
2019-09-28 20:22:18 (9444): Status Report: CPU Time: '66004.656250'
2019-09-28 22:02:36 (9444): Status Report: Elapsed Time: '42000.000000'
2019-09-28 22:02:36 (9444): Status Report: CPU Time: '76440.593750'
2019-09-28 23:42:54 (9444): Status Report: Elapsed Time: '48000.000000'
2019-09-28 23:42:54 (9444): Status Report: CPU Time: '86918.578125'
2019-09-29 01:23:12 (9444): Status Report: Elapsed Time: '54000.000000'
2019-09-29 01:23:12 (9444): Status Report: CPU Time: '97365.968750'
2019-09-29 02:23:59 (9444): Guest Log:  *** Job finished ***

2019-09-29 02:23:59 (9444): Guest Log:  *** The last 20 lines of the pilot log: ***

2019-09-29 02:23:59 (9444): Guest Log: -rw-------.  1 atlas atlas 11357 Jul 25 14:38 LICENSE

2019-09-29 02:23:59 (9444): Guest Log: -rw-------.  1 atlas atlas    20 Sep  9 11:04 MANIFEST.IN

2019-09-29 02:23:59 (9444): Guest Log: -rw-------.  1 atlas atlas    11 Sep 28 08:21 pandaIDs.out

2019-09-29 02:23:59 (9444): Guest Log: drwx------. 14 atlas atlas   216 Sep 28 08:21 pilot

2019-09-29 02:23:59 (9444): Guest Log: -rwx------.  1 atlas atlas 20136 Sep  9 11:04 pilot.py

2019-09-29 02:23:59 (9444): Guest Log: -rw-------.  1 atlas atlas     9 Sep  9 11:04 PILOTVERSION

2019-09-29 02:23:59 (9444): Guest Log: -rw-------.  1 atlas atlas  2251 Jul 25 14:38 README.md

2019-09-29 02:23:59 (9444): Guest Log: -rw-------.  1 atlas atlas   760 Aug 22 09:01 setup.py

2019-09-29 02:23:59 (9444): Guest Log: -rw-------.  1 atlas atlas   221 Jul 25 14:38 TODO.md

2019-09-29 02:23:59 (9444): Guest Log: 2019-09-29 00:23:40 UTC [wrapper] pandaIDs.out files:

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas 11 Sep 28 08:21 /home/atlas/RunAtlas/pilot2/pandaIDs.out

2019-09-29 02:23:59 (9444): Guest Log: 2019-09-29 00:23:41 UTC [wrapper] pandaIDs.out content:

2019-09-29 02:23:59 (9444): Guest Log: 4484649086

2019-09-29 02:23:59 (9444): Guest Log: 2019-09-29 00:23:41 UTC [wrapper] Test setup, not cleaning

2019-09-29 02:23:59 (9444): Guest Log: 2019-09-29 00:23:41 UTC [wrapper] ==== wrapper stdout END ====

2019-09-29 02:23:59 (9444): Guest Log: 2019-09-29 00:23:41 UTC [wrapper] ==== wrapper stderr END ====

2019-09-29 02:23:59 (9444): Guest Log: 2019-09-29 00:23:41 UTC [wrapper] wrapper wrapperexiting ec=0, duration=57766

2019-09-29 02:23:59 (9444): Guest Log: 2019-09-29 00:23:41 UTC [wrapper] apfmon messages muted

2019-09-29 02:23:59 (9444): Guest Log:  *** Error codes and diagnostics ***

2019-09-29 02:23:59 (9444): Guest Log:     "exeErrorCode": 0,

2019-09-29 02:23:59 (9444): Guest Log:     "exeErrorDiag": "",

2019-09-29 02:23:59 (9444): Guest Log:     "pilotErrorCode": 1328,

2019-09-29 02:23:59 (9444): Guest Log:     "pilotErrorDiag": "SIGSEGV: Invalid memory reference or a segmentation fault",

2019-09-29 02:23:59 (9444): Guest Log:  *** Listing of results directory ***

2019-09-29 02:23:59 (9444): Guest Log: total 19732

2019-09-29 02:23:59 (9444): Guest Log: -rw-r--r--. 1 atlas atlas  259319 Sep 20 17:26 pilot2.tar.gz

2019-09-29 02:23:59 (9444): Guest Log: -rwx------. 1 atlas atlas   12762 Sep 20 17:40 runpilot2-wrapper.sh

2019-09-29 02:23:59 (9444): Guest Log: -rw-r--r--. 1 atlas atlas    4480 Sep 20 17:40 queuedata.json

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas    2841 Sep 20 17:40 pandaJobData.out

2019-09-29 02:23:59 (9444): Guest Log: -rwxr-xr-x. 1 atlas atlas    8717 Sep 28 08:20 init_data.xml

2019-09-29 02:23:59 (9444): Guest Log: -rwxr-xr-x. 1 atlas atlas  267501 Sep 28 08:20 input.tar.gz

2019-09-29 02:23:59 (9444): Guest Log: -rwxr-xr-x. 1 atlas atlas     815 Sep 28 08:20 RTE.tar.gz

2019-09-29 02:23:59 (9444): Guest Log: -rwxr-xr-x. 1 atlas atlas    8659 Sep 28 08:20 start_atlas.sh

2019-09-29 02:23:59 (9444): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Sep 28 08:20 EVNT.18605762._000084.pool.root.1 -> /data/./ATLAS.root_0

2019-09-29 02:23:59 (9444): Guest Log: drwxr-xr-x. 3 atlas atlas      17 Sep 28 08:20 APPS

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas 4027843 Sep 28 08:21 agis_schedconf.cvmfs.json

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas 7579780 Sep 28 08:21 agis_ddmendpoints.json

2019-09-29 02:23:59 (9444): Guest Log: drwx------. 3 atlas atlas     229 Sep 28 08:21 pilot2

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas     834 Sep 29 00:23 memory_monitor_summary.json

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas  813014 Sep 29 00:23 log.19056259._004200.job.log.tgz.1

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas   86110 Sep 29 00:23 heartbeat.json

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas   10493 Sep 29 00:23 pilotlog.txt

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas 3070868 Sep 29 00:23 log.19056259._004200.job.log.1

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas     500 Sep 29 00:23 CcCNDmt4bVvnShfckohDCDFpABFKDmABFKDm0oTNDmABFKDmfqmW6m.diag

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas     241 Sep 29 00:23 output.list

2019-09-29 02:23:59 (9444): Guest Log: -rw-r--r--. 1 atlas atlas    6585 Sep 29 00:23 runtime_log.err

2019-09-29 02:23:59 (9444): Guest Log: -rw-r--r--. 1 atlas atlas     692 Sep 29 00:23 runtime_log

2019-09-29 02:23:59 (9444): Guest Log: -rw-------. 1 atlas atlas 3983360 Sep 29 00:23 result.tar.gz

2019-09-29 02:23:59 (9444): Guest Log: Looking for outputfile HITS.19056259._004200.pool.root.1

2019-09-29 02:23:59 (9444): Guest Log: No HITS file was produced

2019-09-29 02:23:59 (9444): Guest Log: Successfully finished the ATLAS job!

2019-09-29 02:23:59 (9444): Guest Log: Copying the results back to the shared directory!

2019-09-29 02:24:00 (9444): Guest Log:  *** Contents of shared directory: ***

2019-09-29 02:24:00 (9444): Guest Log: total 271584

2019-09-29 02:24:00 (9444): Guest Log: -rwxrwxrwx. 1 root root 273814177 Sep 28 08:20 ATLAS.root_0

2019-09-29 02:24:00 (9444): Guest Log: -rwxrwxrwx. 1 root root      8717 Sep 28 08:20 init_data.xml

2019-09-29 02:24:00 (9444): Guest Log: -rwxrwxrwx. 1 root root    267501 Sep 28 08:18 input.tar.gz

2019-09-29 02:24:00 (9444): Guest Log: -rwxrwxrwx. 1 root root   3983360 Sep 29  2019 result.tar.gz

2019-09-29 02:24:00 (9444): Guest Log: -rwxrwxrwx. 1 root root       815 Sep 28 08:18 RTE.tar.gz

2019-09-29 02:24:00 (9444): Guest Log: -rwxrwxrwx. 1 root root      8659 Sep 28 08:18 start_atlas.sh

2019-09-29 02:24:00 (9444): Guest Log:  *** Success! Shutting down the machine. ***

2019-09-29 02:24:00 (9444): VM Completion File Detected.
2019-09-29 02:24:00 (9444): Powering off VM.
2019-09-29 02:29:03 (9444): VM did not power off when requested.
2019-09-29 02:29:03 (9444): VM was successfully terminated.
2019-09-29 02:29:03 (9444): Deregistering VM. (boinc_66cc8bd593a3cf3d, slot#3)
2019-09-29 02:29:03 (9444): Removing network bandwidth throttle group from VM.
2019-09-29 02:29:04 (9444): Removing VM from VirtualBox.
02:29:10 (9444): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN