Name | 9bRLDmz2FYvnShfckohDCDFpABFKDmABFKDmWGgRDmABFKDmNFO3hm_2 |
Workunit | 1942040 |
Created | 29 Sep 2019, 3:59:49 UTC |
Sent | 29 Sep 2019, 13:30:48 UTC |
Report deadline | 6 Oct 2019, 13:30:48 UTC |
Received | 30 Sep 2019, 0:41:26 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3682 |
Run time | 5 hours 19 min 0 sec |
CPU time | 20 hours 48 min 57 sec |
Validate state | Valid |
Credit | 789.80 |
Device peak FLOPS | 17.83 GFLOPS |
Application version | ATLAS Simulation v0.73 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.81 GB |
Peak swap size | 2.58 GB |
Peak disk usage | 745.21 MB |
<core_client_version>7.16.1</core_client_version> <![CDATA[ <stderr_txt> 21:22:14 (1699073): wrapper (7.7.26015): starting 21:22:14 (1699073): wrapper: running run_atlas (--nthreads 4) 2019-09-29 21:22:14,573: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-09-29 21:22:14,573: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-09-29 21:22:14,573: THREADS=4 2019-09-29 21:22:14,574: Checking for CVMFS 2019-09-29 21:22:15,268: CVMFS is installed 2019-09-29 21:22:15,268: Checking Singularity... 2019-09-29 21:22:15,282: Singularity is installed, version singularity version 3.4.0-1.2.el7 2019-09-29 21:22:15,282: Testing the function of Singularity... 2019-09-29 21:22:15,282: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-09-29 21:22:15,355: Singularity Works... 2019-09-29 21:22:15,355: copy /home/dcameron/boinc/slots/0/shared/ATLAS.root_0 2019-09-29 21:22:15,928: copy /home/dcameron/boinc/slots/0/shared/input.tar.gz 2019-09-29 21:22:15,929: copy /home/dcameron/boinc/slots/0/shared/RTE.tar.gz 2019-09-29 21:22:15,929: copy /home/dcameron/boinc/slots/0/shared/start_atlas.sh 2019-09-29 21:22:15,929: export ATHENA_PROC_NUMBER=4; 2019-09-29 21:22:15,942: start atlas job with PandaID=4493222929 2019-09-29 21:22:15,942: cmd = singularity exec --pwd /home/dcameron/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-09-30 02:41:11,833: running cmd return value is 0 2019-09-30 02:41:11,833: Moving ./HITS.19000492._017510.pool.root.1 to shared/HITS.pool.root.1 2019-09-30 02:41:11,833: HITS result file: 2019-09-30 02:41:11,839: -rw-------. 1 dcameron zp 243311664 Sep 30 02:39 shared/HITS.pool.root.1 2019-09-30 02:41:11,839: *****************The last 100 lines of the pilot log****************** 2019-09-30 02:41:11,841: 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 1705863 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: 1705863 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.control.job | has_job_completed | job 4493222929 has completed 2019-09-30 00:40:51,754 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-09-30 00:40:51,758 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/dcameron/boinc/slots/0/PanDA_Pilot-4493222929 2019-09-30 00:40:52,763 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [1705863] 2019-09-30 00:40:52,763 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 1705863 2019-09-30 00:40:52,763 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-09-30 00:40:53,768 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-09-30 00:40:53,768 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=1705863 2019-09-30 00:40:53,844 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [1705863] (in reverse order) 2019-09-30 00:40:53,879 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-09-30 00:40:53,879 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-09-30 00:40:53,879 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-09-30 00:40:53,879 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-09-30 00:40:53,882 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-30 00:40:53,882 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) *** 2019-09-30 00:40:53,882 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-30 00:40:53,882 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-09-30 00:40:53,882 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-09-30 00:40:53,946 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch Distributor ID: ScientificCERNSLC Description: Scientific Linux CERN SLC release 6.10 (Carbon) Release: 6.10 Codename: Carbon 2019-09-30 00:40:53,946 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-30 00:40:54,449 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/dcameron/boinc/slots/0 2019-09-30 00:40:54,465 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (69811044352 B) 2019-09-30 00:40:54,465 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-09-30 00:40:54,465 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-09-30 00:40:54,485 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-09-30 00:40:54,489 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-09-30 00:40:54,491 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-09-30 00:40:54,561 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-09-30 00:40:54,603 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-09-30 00:40:54,782 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-09-30 00:40:54,782 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140699347769088)>, <ExcThread(job, started 140699131496192)>, <ExcThread(data, started 140699114710784)>, <ExcThread(validate, started 140699123103488)>, <ExcThread(execute_payloads, started 140698330314496)>, <ExcThread(queue_monitor, started 140698338707200)>, <ExcThread(validate_post, started 140698355492608)>, <ExcThread(job_monitor, started 140698229667584)>, <ExcThread(copytool_out, started 140698900756224)>, <ExcThread(queue_monitoring, started 140698867185408)>, <ExcThread(failed_post, started 140698347099904)>, <ExcThread(payload, started 140698892363520)>] 2019-09-30 00:40:55,045 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-09-30 00:40:55,045 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-09-30 00:40:55,085 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-09-30 00:40:55,085 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-09-30 00:40:55,111 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-09-30 00:40:55,111 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140699347769088)>, <ExcThread(job, started 140699131496192)>, <ExcThread(validate, started 140699123103488)>, <ExcThread(execute_payloads, started 140698330314496)>, <ExcThread(queue_monitor, started 140698338707200)>, <ExcThread(validate_post, started 140698355492608)>, <ExcThread(job_monitor, started 140698229667584)>, <ExcThread(copytool_out, started 140698900756224)>, <ExcThread(queue_monitoring, started 140698867185408)>, <ExcThread(failed_post, started 140698347099904)>] 2019-09-30 00:40:55,236 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-09-30 00:40:55,290 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-09-30 00:40:55,313 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-09-30 00:40:55,313 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140699347769088)>, <ExcThread(job, started 140699131496192)>, <ExcThread(validate, started 140699123103488)>, <ExcThread(queue_monitor, started 140698338707200)>, <ExcThread(job_monitor, started 140698229667584)>, <ExcThread(copytool_out, started 140698900756224)>, <ExcThread(queue_monitoring, started 140698867185408)>, <ExcThread(failed_post, started 140698347099904)>] 2019-09-30 00:40:55,374 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-09-30 00:40:55,374 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-09-30 00:40:55,462 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-09-30 00:40:55,478 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-09-30 00:40:55,490 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-09-30 00:40:55,514 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-09-30 00:40:55,514 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140699347769088)>, <ExcThread(job, started 140699131496192)>, <ExcThread(job_monitor, started 140698229667584)>, <ExcThread(queue_monitoring, started 140698867185408)>] 2019-09-30 00:40:55,578 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-09-30 00:40:55,578 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-09-30 00:40:55,615 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-09-30 00:40:55,615 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140699347769088)>, <ExcThread(job_monitor, started 140698229667584)>, <ExcThread(queue_monitoring, started 140698867185408)>] 2019-09-30 00:40:55,984 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-09-30 00:40:58,985 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-09-30 00:40:59,035 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-09-30 00:40:59,035 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140699347769088)>, <ExcThread(job_monitor, started 140698229667584)>] 2019-09-30 00:41:11,540 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-09-30 00:41:11,540 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-09-30 00:41:11,615 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-09-30 00:41:11,615 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-09-30 00:41:11,615 | INFO | MainThread | root | wrap_up | pilot has finished 2019-09-30 00:41:11 UTC [wrapper] ==== pilot stdout END ==== 2019-09-30 00:41:11 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-09-30 00:41:11 UTC [wrapper] Pilot exit status: 0 2019-09-30 00:41:11 UTC [wrapper] STATUSCODE: 0 2019-09-30 00:41:11 UTC [wrapper] apfmon messages muted ---- find pandaIDs.out ---- total 56 -rw-------. 1 dcameron zp 11357 Jul 25 16:38 LICENSE -rw-------. 1 dcameron zp 20 Sep 9 13:04 MANIFEST.IN -rw-------. 1 dcameron zp 11 Sep 29 21:22 pandaIDs.out drwx------. 14 dcameron zp 216 Sep 29 21:22 pilot -rwx------. 1 dcameron zp 20136 Sep 9 13:04 pilot.py -rw-------. 1 dcameron zp 9 Sep 9 13:04 PILOTVERSION -rw-------. 1 dcameron zp 2251 Jul 25 16:38 README.md -rw-------. 1 dcameron zp 760 Aug 22 11:01 setup.py -rw-------. 1 dcameron zp 221 Jul 25 16:38 TODO.md 2019-09-30 00:41:11 UTC [wrapper] pandaIDs.out files: -rw-------. 1 dcameron zp 11 Sep 29 21:22 /home/dcameron/boinc/slots/0/pilot2/pandaIDs.out 2019-09-30 00:41:11 UTC [wrapper] pandaIDs.out content: 4493222929 2019-09-30 00:41:11 UTC [wrapper] Test setup, not cleaning 2019-09-30 00:41:11 UTC [wrapper] ==== wrapper stdout END ==== 2019-09-30 00:41:11 UTC [wrapper] ==== wrapper stderr END ==== 2019-09-30 00:41:11 UTC [wrapper] wrapper wrapperexiting ec=0, duration=19135 2019-09-30 00:41:11 UTC [wrapper] apfmon messages muted 2019-09-30 02:41:11,844: ***************diag file************ 2019-09-30 02:41:11,844: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=19135.74s KernelTime=553.64s UserTime=74937.48s CPUUsage=394% MaxResidentMemory=1945236kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=614690 MinorPageFaults=22500428 Swaps=0 ForcedSwitches=855873 WaitSwitches=13026952 Inputs=138741272 Outputs=1028520 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@pcoslo5.cern.ch exitcode=0 2019-09-30 02:41:11,848: ******************************WorkDir*********************** 2019-09-30 02:41:11,848: total 268752 drwxrwx--x. 7 dcameron zp 4096 Sep 30 02:41 . drwxrwx--x. 4 dcameron zp 24 Sep 26 17:13 .. -rw-------. 1 dcameron zp 516 Sep 30 02:41 9bRLDmz2FYvnShfckohDCDFpABFKDmABFKDmWGgRDmABFKDmNFO3hm.diag -rw-------. 1 dcameron zp 7579780 Sep 29 21:22 agis_ddmendpoints.json -rw-------. 1 dcameron zp 3948714 Sep 29 21:22 agis_schedconf.cvmfs.json drwx------. 2 dcameron zp 6 Sep 29 21:22 .alrb drwxr-xr-x. 3 dcameron zp 17 Sep 29 21:22 APPS -rw-------. 1 dcameron zp 548 Sep 29 21:22 .asetup -rw-------. 1 dcameron zp 826 Sep 29 21:22 .asetup.save drwx------. 2 dcameron zp 6 Sep 29 21:22 .asetup-sysbin_1703076 -rw-r--r--. 1 dcameron zp 0 Sep 29 21:22 boinc_lockfile -rw-r--r--. 1 dcameron zp 8192 Sep 30 02:41 boinc_mmap_file -rw-r--r--. 1 dcameron zp 537 Sep 30 02:33 boinc_task_state.xml -rw-r--r--. 1 dcameron zp 261054389 Sep 29 21:22 EVNT.18605549._000343.pool.root.1 -rw-------. 1 dcameron zp 73295 Sep 30 02:40 heartbeat.json -rw-r--r--. 1 dcameron zp 6290 Sep 29 21:22 init_data.xml -rw-r--r--. 1 dcameron zp 267501 Sep 29 21:22 input.tar.gz -rw-r--r--. 1 dcameron zp 112 Sep 29 21:22 job.xml -rw-------. 1 dcameron zp 1010779 Sep 30 02:41 log.19000492._017510.job.log.1 -rw-------. 1 dcameron zp 831489 Sep 30 02:40 log.19000492._017510.job.log.tgz.1 -rw-------. 1 dcameron zp 463 Sep 30 02:41 output.list -rw-------. 1 dcameron zp 2842 Sep 28 02:45 pandaJobData.out drwx------. 3 dcameron zp 229 Sep 29 21:22 pilot2 -rw-r--r--. 1 dcameron zp 259319 Sep 28 02:32 pilot2.tar.gz -rw-------. 1 dcameron zp 9820 Sep 30 02:41 pilotlog.txt -rw-r--r--. 1 dcameron zp 4480 Sep 28 02:45 queuedata.json -rw-r--r--. 1 dcameron zp 815 Sep 29 21:22 RTE.tar.gz -rwxr-xr-x. 1 dcameron zp 7941 Sep 29 21:22 run_atlas -rwx------. 1 dcameron zp 12762 Sep 28 02:45 runpilot2-wrapper.sh -rw-r--r--. 1 dcameron zp 692 Sep 30 02:41 runtime_log -rw-r--r--. 1 dcameron zp 8044 Sep 30 02:41 runtime_log.err -rw-------. 1 dcameron zp 240 Sep 29 21:22 setup.sh.local drwxrwx--x. 2 dcameron zp 131 Sep 30 02:41 shared -rw-r--r--. 1 dcameron zp 8688 Sep 29 21:22 start_atlas.sh -rw-r--r--. 1 dcameron zp 16767 Sep 30 02:41 stderr.txt -rw-r--r--. 1 dcameron zp 107 Sep 29 21:22 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 dcameron zp 28 Sep 30 02:40 wrapper_checkpoint.txt 2019-09-30 02:41:11,848: running start_atlas return value is 0 2019-09-30 02:41:11,848: Parent exit 0 2019-09-30 02:41:11,849: child process exit 0 02:41:12 (1699073): run_atlas exited; CPU time 74937.790294 02:41:12 (1699073): called boinc_finish(0) </stderr_txt> ]]>
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