Name | F04LDmEwfYvnShfckohDCDFpABFKDmABFKDmQZKSDmABFKDmZT5uIm_0 |
Workunit | 1942362 |
Created | 29 Sep 2019, 4:24:39 UTC |
Sent | 29 Sep 2019, 13:30:48 UTC |
Report deadline | 6 Oct 2019, 13:30:48 UTC |
Received | 29 Sep 2019, 19:22:22 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3682 |
Run time | 5 hours 51 min 13 sec |
CPU time | 22 hours 52 min 47 sec |
Validate state | Valid |
Credit | 869.56 |
Device peak FLOPS | 17.83 GFLOPS |
Application version | ATLAS Simulation v0.73 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.81 GB |
Peak swap size | 5.86 GB |
Peak disk usage | 887.74 MB |
<core_client_version>7.16.1</core_client_version> <![CDATA[ <stderr_txt> 15:30:59 (1560033): wrapper (7.7.26015): starting 15:30:59 (1560033): wrapper: running run_atlas (--nthreads 4) 2019-09-29 15:30:59,429: singularity image is /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 2019-09-29 15:30:59,429: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-09-29 15:30:59,429: THREADS=4 2019-09-29 15:30:59,430: Checking for CVMFS 2019-09-29 15:31:00,150: CVMFS is installed 2019-09-29 15:31:00,150: Checking Singularity... 2019-09-29 15:31:00,166: Singularity is installed, version singularity version 3.4.0-1.2.el7 2019-09-29 15:31:00,166: Testing the function of Singularity... 2019-09-29 15:31:00,166: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 hostname 2019-09-29 15:31:00,236: Singularity Works... 2019-09-29 15:31:00,236: copy /home/dcameron/boinc/slots/0/shared/ATLAS.root_0 2019-09-29 15:31:01,945: copy /home/dcameron/boinc/slots/0/shared/input.tar.gz 2019-09-29 15:31:01,946: copy /home/dcameron/boinc/slots/0/shared/RTE.tar.gz 2019-09-29 15:31:01,946: copy /home/dcameron/boinc/slots/0/shared/start_atlas.sh 2019-09-29 15:31:01,946: export ATHENA_PROC_NUMBER=4; 2019-09-29 15:31:01,959: start atlas job with PandaID=4494464396 2019-09-29 15:31:01,960: cmd = singularity exec --pwd /home/dcameron/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-slc6 sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-09-29 21:22:10,423: running cmd return value is 0 2019-09-29 21:22:10,424: Moving ./HITS.19000575._013970.pool.root.1 to shared/HITS.pool.root.1 2019-09-29 21:22:10,424: HITS result file: 2019-09-29 21:22:10,428: -rw-------. 1 dcameron zp 245231345 Sep 29 21:19 shared/HITS.pool.root.1 2019-09-29 21:22:10,429: *****************The last 100 lines of the pilot log****************** 2019-09-29 21:22:10,431: 2019-09-29 19:21:44,162 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-09-29 19:21:44,162 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-09-29 19:21:44,162 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-09-29 19:21:44,162 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-09-29 19:21:44,162 | INFO | retrieve | pilot.control.job | has_job_completed | job 4494464396 has completed 2019-09-29 19:21:44,162 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-09-29 19:21:44,165 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/dcameron/boinc/slots/0/PanDA_Pilot-4494464396 2019-09-29 19:21:45,168 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [1566811] 2019-09-29 19:21:45,168 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 1566811 2019-09-29 19:21:45,168 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-09-29 19:21:46,169 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-09-29 19:21:46,169 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=1566811 2019-09-29 19:21:46,240 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [1566811] (in reverse order) 2019-09-29 19:21:46,273 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-09-29 19:21:46,273 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-09-29 19:21:46,274 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-09-29 19:21:46,274 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-09-29 19:21:46,276 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-29 19:21:46,276 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) *** 2019-09-29 19:21:46,276 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-29 19:21:46,276 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-09-29 19:21:46,277 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-09-29 19:21:46,339 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch Distributor ID: ScientificCERNSLC Description: Scientific Linux CERN SLC release 6.10 (Carbon) Release: 6.10 Codename: Carbon 2019-09-29 19:21:46,339 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-09-29 19:21:46,842 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/dcameron/boinc/slots/0 2019-09-29 19:21:46,858 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (69976719360 B) 2019-09-29 19:21:46,858 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-09-29 19:21:46,858 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-09-29 19:21:46,866 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-09-29 19:21:46,873 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-09-29 19:21:46,877 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-09-29 19:21:46,907 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-09-29 19:21:46,907 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-09-29 19:21:46,911 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-09-29 19:21:46,926 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-09-29 19:21:46,926 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140271494973184)>, <ExcThread(job, started 140271278700288)>, <ExcThread(queue_monitor, started 140270200940288)>, <ExcThread(execute_payloads, started 140270209332992)>, <ExcThread(queue_monitoring, started 140270746203904)>, <ExcThread(failed_post, started 140270695847680)>, <ExcThread(create_data_payload, started 140271228344064)>, <ExcThread(validate_pre, started 140271236736768)>, <ExcThread(payload, started 140271245129472)>, <ExcThread(job_monitor, started 140270704240384)>, <ExcThread(validate_post, started 140270721025792)>, <ExcThread(copytool_out, started 140271253522176)>] 2019-09-29 19:21:46,997 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-09-29 19:21:47,066 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-09-29 19:21:47,119 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-09-29 19:21:47,119 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-09-29 19:21:47,228 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-09-29 19:21:47,228 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140271494973184)>, <ExcThread(queue_monitor, started 140270200940288)>, <ExcThread(execute_payloads, started 140270209332992)>, <ExcThread(queue_monitoring, started 140270746203904)>, <ExcThread(failed_post, started 140270695847680)>, <ExcThread(create_data_payload, started 140271228344064)>, <ExcThread(payload, started 140271245129472)>, <ExcThread(job_monitor, started 140270704240384)>, <ExcThread(copytool_out, started 140271253522176)>] 2019-09-29 19:21:47,530 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-09-29 19:21:47,559 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-09-29 19:21:47,560 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-09-29 19:21:47,561 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-09-29 19:21:47,562 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140271494973184)>, <ExcThread(queue_monitor, started 140270200940288)>, <ExcThread(queue_monitoring, started 140270746203904)>, <ExcThread(failed_post, started 140270695847680)>, <ExcThread(create_data_payload, started 140271228344064)>, <ExcThread(job_monitor, started 140270704240384)>, <ExcThread(copytool_out, started 140271253522176)>] 2019-09-29 19:21:47,870 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-09-29 19:21:47,878 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-09-29 19:21:47,964 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-09-29 19:21:47,964 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140271494973184)>, <ExcThread(queue_monitor, started 140270200940288)>, <ExcThread(queue_monitoring, started 140270746203904)>, <ExcThread(create_data_payload, started 140271228344064)>, <ExcThread(job_monitor, started 140270704240384)>] 2019-09-29 19:21:47,986 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-09-29 19:21:48,065 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-09-29 19:21:48,065 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140271494973184)>, <ExcThread(queue_monitor, started 140270200940288)>, <ExcThread(queue_monitoring, started 140270746203904)>, <ExcThread(job_monitor, started 140270704240384)>] 2019-09-29 19:21:48,147 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-09-29 19:21:48,147 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-09-29 19:21:48,166 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-09-29 19:21:48,166 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140271494973184)>, <ExcThread(queue_monitoring, started 140270746203904)>, <ExcThread(job_monitor, started 140270704240384)>] 2019-09-29 19:21:49,784 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-09-29 19:21:52,785 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-09-29 19:21:52,796 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-09-29 19:21:52,796 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140271494973184)>, <ExcThread(job_monitor, started 140270704240384)>] 2019-09-29 19:22:10,118 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-09-29 19:22:10,118 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-09-29 19:22:10,208 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-09-29 19:22:10,208 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-09-29 19:22:10,208 | INFO | MainThread | root | wrap_up | pilot has finished 2019-09-29 19:22:10 UTC [wrapper] ==== pilot stdout END ==== 2019-09-29 19:22:10 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-09-29 19:22:10 UTC [wrapper] Pilot exit status: 0 2019-09-29 19:22:10 UTC [wrapper] STATUSCODE: 0 2019-09-29 19:22:10 UTC [wrapper] apfmon messages muted ---- find pandaIDs.out ---- total 56 -rw-------. 1 dcameron zp 11357 Jul 25 16:38 LICENSE -rw-------. 1 dcameron zp 20 Sep 9 13:04 MANIFEST.IN -rw-------. 1 dcameron zp 11 Sep 29 15:31 pandaIDs.out drwx------. 14 dcameron zp 216 Sep 29 15:31 pilot -rwx------. 1 dcameron zp 20136 Sep 9 13:04 pilot.py -rw-------. 1 dcameron zp 9 Sep 9 13:04 PILOTVERSION -rw-------. 1 dcameron zp 2251 Jul 25 16:38 README.md -rw-------. 1 dcameron zp 760 Aug 22 11:01 setup.py -rw-------. 1 dcameron zp 221 Jul 25 16:38 TODO.md 2019-09-29 19:22:10 UTC [wrapper] pandaIDs.out files: -rw-------. 1 dcameron zp 11 Sep 29 15:31 /home/dcameron/boinc/slots/0/pilot2/pandaIDs.out 2019-09-29 19:22:10 UTC [wrapper] pandaIDs.out content: 4494464396 2019-09-29 19:22:10 UTC [wrapper] Test setup, not cleaning 2019-09-29 19:22:10 UTC [wrapper] ==== wrapper stdout END ==== 2019-09-29 19:22:10 UTC [wrapper] ==== wrapper stderr END ==== 2019-09-29 19:22:10 UTC [wrapper] wrapper wrapperexiting ec=0, duration=21068 2019-09-29 19:22:10 UTC [wrapper] apfmon messages muted 2019-09-29 21:22:10,434: ***************diag file************ 2019-09-29 21:22:10,434: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=21068.10s KernelTime=600.71s UserTime=82367.49s CPUUsage=393% MaxResidentMemory=1945384kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=660634 MinorPageFaults=23821190 Swaps=0 ForcedSwitches=951995 WaitSwitches=14021427 Inputs=149593192 Outputs=1037920 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@pcoslo5.cern.ch exitcode=0 2019-09-29 21:22:10,438: ******************************WorkDir*********************** 2019-09-29 21:22:10,438: total 218864 drwxrwx--x. 7 dcameron zp 4096 Sep 29 21:22 . drwxrwx--x. 4 dcameron zp 24 Sep 26 17:13 .. -rw-------. 1 dcameron zp 7579780 Sep 29 15:31 agis_ddmendpoints.json -rw-------. 1 dcameron zp 4028022 Sep 29 15:31 agis_schedconf.cvmfs.json drwx------. 2 dcameron zp 6 Sep 29 15:31 .alrb drwxr-xr-x. 3 dcameron zp 17 Sep 29 15:31 APPS -rw-------. 1 dcameron zp 548 Sep 29 15:31 .asetup -rw-------. 1 dcameron zp 826 Sep 29 15:31 .asetup.save drwx------. 2 dcameron zp 6 Sep 29 15:31 .asetup-sysbin_1564023 -rw-r--r--. 1 dcameron zp 0 Sep 29 15:30 boinc_lockfile -rw-r--r--. 1 dcameron zp 8192 Sep 29 21:21 boinc_mmap_file -rw-r--r--. 1 dcameron zp 537 Sep 29 21:12 boinc_task_state.xml -rw-r--r--. 1 dcameron zp 209809385 Sep 29 15:31 EVNT.18605585._000282.pool.root.1 -rw-------. 1 dcameron zp 516 Sep 29 21:22 F04LDmEwfYvnShfckohDCDFpABFKDmABFKDmQZKSDmABFKDmZT5uIm.diag -rw-------. 1 dcameron zp 68424 Sep 29 21:21 heartbeat.json -rw-r--r--. 1 dcameron zp 6290 Sep 29 15:30 init_data.xml -rw-r--r--. 1 dcameron zp 267503 Sep 29 15:31 input.tar.gz -rw-r--r--. 1 dcameron zp 112 Sep 29 15:30 job.xml -rw-------. 1 dcameron zp 1089586 Sep 29 21:22 log.19000575._013970.job.log.1 -rw-------. 1 dcameron zp 838760 Sep 29 21:21 log.19000575._013970.job.log.tgz.1 -rw-------. 1 dcameron zp 463 Sep 29 21:22 output.list -rw-------. 1 dcameron zp 2887 Sep 29 06:24 pandaJobData.out drwx------. 3 dcameron zp 229 Sep 29 15:31 pilot2 -rw-r--r--. 1 dcameron zp 259319 Sep 29 05:32 pilot2.tar.gz -rw-------. 1 dcameron zp 10335 Sep 29 21:22 pilotlog.txt -rw-r--r--. 1 dcameron zp 4480 Sep 29 06:24 queuedata.json -rw-r--r--. 1 dcameron zp 815 Sep 29 15:31 RTE.tar.gz -rwxr-xr-x. 1 dcameron zp 7941 Sep 29 15:30 run_atlas -rwx------. 1 dcameron zp 12762 Sep 29 06:24 runpilot2-wrapper.sh -rw-r--r--. 1 dcameron zp 692 Sep 29 21:22 runtime_log -rw-r--r--. 1 dcameron zp 8044 Sep 29 21:22 runtime_log.err -rw-------. 1 dcameron zp 240 Sep 29 15:31 setup.sh.local drwxrwx--x. 2 dcameron zp 131 Sep 29 21:22 shared -rw-r--r--. 1 dcameron zp 8688 Sep 29 15:31 start_atlas.sh -rw-r--r--. 1 dcameron zp 17011 Sep 29 21:22 stderr.txt -rw-r--r--. 1 dcameron zp 107 Sep 29 15:30 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 dcameron zp 28 Sep 29 21:21 wrapper_checkpoint.txt 2019-09-29 21:22:10,438: running start_atlas return value is 0 2019-09-29 21:22:10,438: Parent exit 0 2019-09-29 21:22:10,438: child process exit 0 21:22:11 (1560033): run_atlas exited; CPU time 82367.979680 21:22:11 (1560033): called boinc_finish(0) </stderr_txt> ]]>
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