| Name | PIRKDm1d2TvnShfckohDCDFpABFKDmABFKDmQ6FKDmfFFKDmr2Lzdn_3 |
| Workunit | 1938700 |
| Created | 1 Oct 2019, 5:30:39 UTC |
| Sent | 7 Oct 2019, 11:12:02 UTC |
| Report deadline | 14 Oct 2019, 11:12:02 UTC |
| Received | 8 Oct 2019, 0:45:50 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3911 |
| Run time | 19 min 35 sec |
| CPU time | 33 min 27 sec |
| Validate state | Valid |
| Credit | 31.67 |
| Device peak FLOPS | 11.64 GFLOPS |
| Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.79 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 731.83 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:26:03 (4669): wrapper (7.7.26015): starting
02:26:03 (4669): wrapper: running run_atlas (--nthreads 4)
2019-10-08 02:26:03,865: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
2019-10-08 02:26:03,865: sys.argv = ['run_atlas', '--nthreads', '4']
2019-10-08 02:26:03,866: THREADS=4
2019-10-08 02:26:03,868: Checking for CVMFS
2019-10-08 02:26:06,486: CVMFS is installed
2019-10-08 02:26:06,487: Checking Singularity...
2019-10-08 02:26:07,268: Singularity is installed, version singularity version 3.2.1-1
2019-10-08 02:26:07,268: Testing the function of Singularity...
2019-10-08 02:26:07,268: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
2019-10-08 02:26:17,272: Singularity Works...
2019-10-08 02:26:17,273: copy /home/grid/slots/0/shared/ATLAS.root_0
2019-10-08 02:26:17,961: copy /home/grid/slots/0/shared/input.tar.gz
2019-10-08 02:26:17,962: copy /home/grid/slots/0/shared/RTE.tar.gz
2019-10-08 02:26:17,962: copy /home/grid/slots/0/shared/start_atlas.sh
2019-10-08 02:26:17,963: export ATHENA_PROC_NUMBER=4;
2019-10-08 02:26:17,995: start atlas job with PandaID=4002876565
2019-10-08 02:26:17,995: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err
2019-10-08 02:45:37,434: running cmd return value is 0
2019-10-08 02:45:37,438: Moving ./HITS.000649-403420-13268._078090.pool.root.1 to shared/HITS.pool.root.1
2019-10-08 02:45:37,438: HITS result file:
2019-10-08 02:45:37,464: -rw-------. 1 grid grid 9160611 Oct 8 02:44 shared/HITS.pool.root.1
2019-10-08 02:45:37,465: *****************The last 200 lines of the pilot log******************
2019-10-08 02:45:37,470: "wallTime": 3
},
"total": {
"cpuTime": 58,
"wallTime": 128
},
"validation": {
"cpuTime": 0,
"wallTime": 0
},
"wallTime": 124
}
},
"machine": {
"cpu_family": "6",
"linux_distribution": [
"CentOS Linux",
"7.6.1810",
"Core"
],
"model": "61",
"model_name": "Intel Core Processor (Broadwell, IBRS)",
"node": "dcameron04.cern.ch",
"platform": "Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
},
"transform": {
"cpuEfficiency": 0.4936,
"cpuPWEfficiency": 0.5396,
"cpuTime": 5,
"cpuTimeTotal": 2054,
"externalCpuTime": 7,
"processedEvents": 10,
"trfPredata": null,
"wallTime": 1010
}
}
}
2019-10-08 00:44:30,015 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
2019-10-08 00:44:30,015 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
2019-10-08 00:44:30,015 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
2019-10-08 00:44:30,015 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -355547725 B to job metrics
2019-10-08 00:44:30,016 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570494435.0, 1570494496.0, 1570494557.0, 1570494618.0, 1570494679.0, 1570494740.0, 1570494801.0, 1570494862.0, 1570494923.0, 1570494984.0, 1570495045.0, 1570495106.0, 1570495167.0, 1570495228.0, 1570495289.0, 1570495350.0, 1570495411.0], y=[] (must be same and length>=2)
2019-10-08 00:44:30,016 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=10"
2019-10-08 00:44:30,016 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
2019-10-08 00:44:30,017 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
2019-10-08 00:44:30,018 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 75693, 'nprocs': 10, 'nthreads': 1, 'rx_bytes': 19060732, 'wtime': 989, 'rss': 9423896, 'write_bytes': 16957440, 'vmem': 14014680, 'read_bytes': 3124965376, 'stime': 45, 'tx_bytes': 3595631, 'pss': 2507560, 'wchar': 23940871, 'rchar': 1032225262, 'tx_packets': 24359, 'swap': 0, 'utime': 1975}, 'Avg': {'write_bytes': 17143, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 19270, 'rx_packets': 76, 'vmem': 7641108, 'read_bytes': 3159338, 'swap': 0, 'tx_bytes': 3635, 'pss': 1690995, 'wchar': 24204, 'rchar': 1043579, 'tx_packets': 24, 'rss': 4856631}}
2019-10-08 00:44:30,018 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-08 00:44:30,018 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-08 00:44:30,018 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 1 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 1 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 1043 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 2 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-08 00:44:30,019 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4002876565/pandatracerlog.txt (ignoring)
2019-10-08 00:44:30,020 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4002876565/pilotlog.txt
2019-10-08 00:44:30,043 | WARNING | queue_monitor | pilot.util.auxiliary.4002876565 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-10-08 00:44:30,016 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570494435.0, 1570494496.0, 1570494557.0, 1570494618.0, 1570494679.0, 1570494740.0, 1570494801.0, 1570494862.0, 1570494923.0, 1570494984.0, 1570495045.0, 1570495106.0, 1570495167.0, 1570495228.0, 1570495289.0, 1570495350.0, 1570495411.0], y=[] (must be same and length>=2)
2019-10-08 00:44:30,016 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=10"
2019-10-08 00:44:30,016 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
2019-10-08 00:44:30,017 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
2019-10-08 00:44:30,018 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 75693, 'nprocs': 10, 'nthreads': 1, 'rx_bytes': 19060732, 'wtime': 989, 'rss': 9423896, 'write_bytes': 16957440, 'vmem': 14014680, 'read_bytes': 3124965376, 'stime': 45, 'tx_bytes': 3595631, 'pss': 2507560, 'wchar': 23940871, 'rchar': 1032225262, 'tx_packets': 24359, 'swap': 0, 'utime': 1975}, 'Avg': {'write_bytes': 17143, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 19270, 'rx_packets': 76, 'vmem': 7641108, 'read_bytes': 3159338, 'swap': 0, 'tx_bytes': 3635, 'pss': 1690995, 'wchar': 24204, 'rchar': 1043579, 'tx_packets': 24, 'rss': 4856631}}
2019-10-08 00:44:30,018 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-08 00:44:30,018 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-08 00:44:30,018 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 1 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 1 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 1043 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 2 s
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
2019-10-08 00:44:30,019 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-08 00:44:30,019 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4002876565/pandatracerlog.txt (ignoring)
2019-10-08 00:44:30,020 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4002876565/pilotlog.txt
2019-10-08 00:44:30,043 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json
2019-10-08 00:44:30,044 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-403420-13268
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
2019-10-08 00:44:30,599 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 2032 s
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 11840
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 11840
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 4
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
2019-10-08 00:44:30,600 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
2019-10-08 00:44:30,601 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
2019-10-08 00:44:30,601 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed
2019-10-08 00:44:30,601 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-10-08 00:44:30,610 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4002876565
2019-10-08 00:44:31,612 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [11840]
2019-10-08 00:44:31,612 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 11840
2019-10-08 00:44:31,612 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-10-08 00:44:32,618 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-10-08 00:44:32,618 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=11840
2019-10-08 00:44:32,699 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [11840] (in reverse order)
2019-10-08 00:44:32,740 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-10-08 00:44:32,741 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-10-08 00:44:32,741 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-10-08 00:44:32,741 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-10-08 00:44:32,745 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 00:44:32,745 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) ***
2019-10-08 00:44:32,745 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 00:44:32,745 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
2019-10-08 00:44:32,745 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
2019-10-08 00:44:32,745 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
2019-10-08 00:44:32,822 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.6.1810 (Core)
Release: 7.6.1810
Codename: Core
2019-10-08 00:44:32,822 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 00:44:33,221 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s)
2019-10-08 00:44:33,325 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0
2019-10-08 00:44:33,349 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (19167969280 B)
2019-10-08 00:44:33,349 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-10-08 00:44:33,349 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-10-08 00:44:33,410 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 16 threads
2019-10-08 00:44:33,411 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140457539118912)>, <ExcThread(job, started 140457377486592)>, <ExcThread(validate_pre, started 140456813905664)>, <ExcThread(queue_monitoring, started 140456839083776)>, <ExcThread(failed_post, started 140456788727552)>, <ExcThread(monitor, started 140456830691072)>, <ExcThread(validate, started 140457369093888)>, <ExcThread(validate_post, started 140456797120256)>, <ExcThread(queue_monitor, started 140456822298368)>, <ExcThread(copytool_in, started 140456805512960)>, <ExcThread(create_data_payload, started 140457352308480)>, <ExcThread(job_monitor, started 140457318737664)>, <ExcThread(copytool_out, started 140457327130368)>, <ExcThread(execute_payloads, started 140456235104000)>, <ExcThread(payload, started 140457343915776)>, <ExcThread(data, started 140457360701184)>]
2019-10-08 00:44:33,530 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-10-08 00:44:33,646 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-10-08 00:44:33,724 | WARNING | job_monitor | pilot.util.common | should_abort | job:job_monitor:received graceful stop - abort after this iteration
2019-10-08 00:44:33,811 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-10-08 00:44:33,812 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-10-08 00:44:33,867 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-10-08 00:44:33,913 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads
2019-10-08 00:44:33,913 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140457539118912)>, <ExcThread(job, started 140457377486592)>, <ExcThread(validate_pre, started 140456813905664)>, <ExcThread(queue_monitoring, started 140456839083776)>, <ExcThread(failed_post, started 140456788727552)>, <ExcThread(monitor, started 140456830691072)>, <ExcThread(validate_post, started 140456797120256)>, <ExcThread(queue_monitor, started 140456822298368)>, <ExcThread(create_data_payload, started 140457352308480)>, <ExcThread(job_monitor, started 140457318737664)>, <ExcThread(copytool_out, started 140457327130368)>, <ExcThread(execute_payloads, started 140456235104000)>, <ExcThread(data, started 140457360701184)>]
2019-10-08 00:44:34,035 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-10-08 00:44:34,058 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-10-08 00:44:34,058 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-10-08 00:44:34,067 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-10-08 00:44:34,068 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-10-08 00:44:34,112 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-10-08 00:44:34,112 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-10-08 00:44:34,135 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-10-08 00:44:34,135 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-10-08 00:44:34,136 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-10-08 00:44:34,142 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads
2019-10-08 00:44:34,142 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140457539118912)>, <ExcThread(queue_monitoring, started 140456839083776)>, <ExcThread(queue_monitor, started 140456822298368)>, <ExcThread(job_monitor, started 140457318737664)>, <ExcThread(copytool_out, started 140457327130368)>]
2019-10-08 00:44:34,559 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-10-08 00:44:34,559 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-10-08 00:44:34,569 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-10-08 00:44:34,646 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
2019-10-08 00:44:34,646 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140457539118912)>, <ExcThread(queue_monitoring, started 140456839083776)>, <ExcThread(job_monitor, started 140457318737664)>, <ExcThread(copytool_out, started 140457327130368)>]
2019-10-08 00:44:35,569 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-10-08 00:44:35,653 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-10-08 00:44:35,653 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140457539118912)>, <ExcThread(queue_monitoring, started 140456839083776)>, <ExcThread(job_monitor, started 140457318737664)>]
2019-10-08 00:44:36,648 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-10-08 00:44:36,660 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-10-08 00:44:36,660 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140457539118912)>, <ExcThread(job_monitor, started 140457318737664)>]
2019-10-08 00:45:33,820 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 133 s)
2019-10-08 00:45:33,820 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-10-08 00:45:33,851 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-10-08 00:45:33,851 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-10-08 00:45:33,851 | INFO | MainThread | root | wrap_up | pilot has finished
2019-10-08 00:45:34 UTC [wrapper] ==== pilot stdout END ====
2019-10-08 00:45:34 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-10-08 00:45:34 UTC [wrapper] Pilot exit status: 0
2019-10-08 00:45:34 UTC [wrapper] STATUSCODE: 0
2019-10-08 00:45:34 UTC [wrapper] apfmon messages muted
---- find pandaID.out ----
total 56
-rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE
-rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN
-rw-------. 1 grid grid 11 Oct 8 02:26 pandaIDs.out
drwx------. 14 grid grid 216 Oct 8 02:26 pilot
-rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py
-rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION
-rw-------. 1 grid grid 2251 Jul 25 16:38 README.md
-rw-------. 1 grid grid 760 Aug 22 11:01 setup.py
-rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md
-rw-------. 1 grid grid 11 Oct 8 02:26 /home/grid/slots/0/pilot2/pandaIDs.out
4002876565
2019-10-08 00:45:34 UTC [wrapper] Test setup, not cleaning
2019-10-08 00:45:34 UTC [wrapper] ==== wrapper stdout END ====
2019-10-08 00:45:34 UTC [wrapper] ==== wrapper stderr END ====
2019-10-08 00:45:34 UTC [wrapper] wrapper wrapperexiting ec=0, duration=1151
2019-10-08 00:45:34 UTC [wrapper] apfmon messages muted
2019-10-08 02:45:37,475: ***************diag file************
2019-10-08 02:45:37,475: runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=1150.21s
KernelTime=77.26s
UserTime=1995.23s
CPUUsage=180%
MaxResidentMemory=1946740kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=17284
MinorPageFaults=7630716
Swaps=0
ForcedSwitches=204115
WaitSwitches=2044307
Inputs=6317304
Outputs=87240
SocketReceived=0
SocketSent=0
Signals=0
nodename=David_Cameron@dcameron04.cern.ch
exitcode=0
2019-10-08 02:45:37,482: ******************************WorkDir***********************
2019-10-08 02:45:37,482: total 369564
drwxrwx--x. 7 grid grid 4096 Oct 8 02:45 .
drwxr-x--x. 6 grid grid 42 Sep 26 14:51 ..
-rw-------. 1 grid grid 7595462 Oct 8 02:26 agis_ddmendpoints.json
-rw-------. 1 grid grid 3936744 Oct 8 02:26 agis_schedconf.cvmfs.json
drwx------. 2 grid grid 6 Oct 8 02:26 .alrb
drwxr-xr-x. 3 grid grid 17 Oct 8 02:26 APPS
-rw-------. 1 grid grid 538 Oct 8 02:26 .asetup
-rw-------. 1 grid grid 4506 Oct 8 02:27 .asetup.save
drwx------. 2 grid grid 6 Oct 8 02:27 .asetup-sysbin_11841
-rw-rw-r--. 1 grid grid 0 Oct 8 02:26 boinc_lockfile
-rw-rw-r--. 1 grid grid 8192 Oct 8 02:45 boinc_mmap_file
-rw-rw-r--. 1 grid grid 534 Oct 8 02:38 boinc_task_state.xml
-rw-rw-r--. 1 grid grid 365251149 Oct 8 02:26 EVNT.14296418._001447.pool.root.1
-rw-------. 1 grid grid 15123 Oct 8 02:44 heartbeat.json
-rw-rw-r--. 1 grid grid 5867 Oct 8 02:26 init_data.xml
-rw-rw-r--. 1 grid grid 267443 Oct 8 02:26 input.tar.gz
-rw-rw-r--. 1 grid grid 112 Oct 8 02:26 job.xml
-rw-------. 1 grid grid 735318 Oct 8 02:44 log.000649-403420-13268._078090.job.log.tgz.1
-rw-------. 1 grid grid 181946 Oct 8 02:45 log.14568781._078090.job.log.1
-rw-------. 1 grid grid 837 Oct 8 02:44 memory_monitor_summary.json
-rw-------. 1 grid grid 496 Oct 8 02:45 output.list
-rw-------. 1 grid grid 2948 Sep 16 11:38 pandaJobData.out
drwx------. 3 grid grid 229 Oct 8 02:26 pilot2
-rw-r--r--. 1 grid grid 259319 Sep 16 11:27 pilot2.tar.gz
-rw-------. 1 grid grid 10509 Oct 8 02:45 pilotlog.txt
-rw-------. 1 grid grid 509 Oct 8 02:45 PIRKDm1d2TvnShfckohDCDFpABFKDmABFKDmQ6FKDmfFFKDmr2Lzdn.diag
-rw-r--r--. 1 grid grid 4480 Sep 16 11:35 queuedata.json
-rw-rw-r--. 1 grid grid 815 Oct 8 02:26 RTE.tar.gz
-rwxr-xr-x. 1 grid grid 7950 Oct 8 02:26 run_atlas
-rwx------. 1 grid grid 12641 Sep 16 11:38 runpilot2-wrapper.sh
-rw-rw-r--. 1 grid grid 717 Oct 8 02:45 runtime_log
-rw-rw-r--. 1 grid grid 6947 Oct 8 02:45 runtime_log.err
drwxrwx--x. 2 grid grid 131 Oct 8 02:45 shared
-rw-rw-r--. 1 grid grid 8494 Oct 8 02:26 start_atlas.sh
-rw-rw-r--. 1 grid grid 29851 Oct 8 02:45 stderr.txt
-rw-rw-r--. 1 grid grid 107 Oct 8 02:26 wrapper_26015_x86_64-pc-linux-gnu
-rw-rw-r--. 1 grid grid 26 Oct 8 02:45 wrapper_checkpoint.txt
2019-10-08 02:45:37,483: running start_atlas return value is 0
2019-10-08 02:45:37,483: Parent exit 0
2019-10-08 02:45:37,485: child process exit 0
02:45:38 (4669): run_atlas exited; CPU time 2007.664588
02:45:38 (4669): called boinc_finish(0)
</stderr_txt>
]]>
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