| Name | 3llKDmnCOavnShfckohDCDFpABFKDmABFKDmmsKVDmABFKDmnsh0Fm_1 |
| Workunit | 1943108 |
| Created | 4 Oct 2019, 3:46:49 UTC |
| Sent | 7 Oct 2019, 10:10:43 UTC |
| Report deadline | 14 Oct 2019, 10:10:43 UTC |
| Received | 7 Oct 2019, 21:25:49 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3682 |
| Run time | 5 hours 6 min 16 sec |
| CPU time | 19 hours 58 min 53 sec |
| Validate state | Valid |
| Credit | 758.28 |
| Device peak FLOPS | 17.83 GFLOPS |
| Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.82 GB |
| Peak swap size | 2.61 GB |
| Peak disk usage | 751.58 MB |
Stderr output
<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
18:19:20 (179286): wrapper (7.7.26015): starting
18:19:20 (179286): wrapper: running run_atlas (--nthreads 4)
2019-10-07 18:19:20,833: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
2019-10-07 18:19:20,833: sys.argv = ['run_atlas', '--nthreads', '4']
2019-10-07 18:19:20,834: THREADS=4
2019-10-07 18:19:20,834: Checking for CVMFS
2019-10-07 18:19:21,518: CVMFS is installed
2019-10-07 18:19:21,518: Checking Singularity...
2019-10-07 18:19:21,575: Singularity is installed, version singularity version 3.4.0-1.2.el7
2019-10-07 18:19:21,576: Testing the function of Singularity...
2019-10-07 18:19:21,576: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
2019-10-07 18:19:21,696: Singularity Works...
2019-10-07 18:19:21,696: copy /home/dcameron/boinc/slots/1/shared/ATLAS.root_0
2019-10-07 18:19:23,660: copy /home/dcameron/boinc/slots/1/shared/input.tar.gz
2019-10-07 18:19:23,660: copy /home/dcameron/boinc/slots/1/shared/RTE.tar.gz
2019-10-07 18:19:23,661: copy /home/dcameron/boinc/slots/1/shared/start_atlas.sh
2019-10-07 18:19:23,661: export ATHENA_PROC_NUMBER=4;
2019-10-07 18:19:23,798: start atlas job with PandaID=4495584546
2019-10-07 18:19:23,798: cmd = singularity exec --pwd /home/dcameron/boinc/slots/1 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err
2019-10-07 23:25:35,328: running cmd return value is 0
2019-10-07 23:25:35,329: Moving ./HITS.19000492._019992.pool.root.1 to shared/HITS.pool.root.1
2019-10-07 23:25:35,329: HITS result file:
2019-10-07 23:25:35,334: -rw-------. 1 dcameron zp 248182771 Oct 7 23:23 shared/HITS.pool.root.1
2019-10-07 23:25:35,335: *****************The last 200 lines of the pilot log******************
2019-10-07 23:25:35,340: },
"validation": {
"cpuTime": 0,
"wallTime": 0
},
"wallTime": 78
}
},
"machine": {
"cpu_family": "6",
"linux_distribution": [
"CentOS Linux",
"7.6.1810",
"Core"
],
"model": "60",
"model_name": "Intel(R) Core(TM) i7-4790 CPU @ 3.60GHz",
"node": "pcoslo5.cern.ch",
"platform": "Linux-3.10.0-1062.1.1.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
},
"transform": {
"cpuEfficiency": 0.9839,
"cpuPWEfficiency": 0.9859,
"cpuTime": 5,
"cpuTimeTotal": 71931,
"externalCpuTime": 141,
"processedEvents": 200,
"trfPredata": null,
"wallTime": 18231
}
}
}
2019-10-07 21:24:39,116 | DEBUG | queue_monitor | pilot.util.auxiliary.4495584546 | update_server | xml:will send fileinfo
2019-10-07 21:24:39,116 | INFO | queue_monitor | pilot.control.job.4495584546 | send_state | pilot will not update the server (heartbeat message will be written to file)
2019-10-07 21:24:39,116 | INFO | queue_monitor | pilot.control.job.4495584546 | send_state | job 4495584546 has finished - writing final server update
2019-10-07 21:24:39,119 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570465197.0, 1570465258.0, 1570465319.0, 1570465380.0, 1570465441.0, 1570465502.0, 1570465563.0, 1570465624.0, 1570465685.0, 1570465746.0, 1570465807.0, 1570465868.0, 1570465929.0, 1570465990.0, 1570466051.0, 1570466112.0, 1570466173.0, 1570466234.0, 1570466295.0, 1570466356.0, 1570466417.0, 1570466478.0, 1570466539.0, 1570466600.0, 1570466661.0, 1570466722.0, 1570466783.0, 1570466844.0, 1570466905.0, 1570466966.0, 1570467027.0, 1570467088.0, 1570467149.0, 1570467210.0, 1570467271.0, 1570467332.0, 1570467393.0, 1570467454.0, 1570467515.0, 1570467576.0, 1570467637.0, 1570467698.0, 1570467759.0, 1570467820.0, 1570467881.0, 1570467942.0, 1570468003.0, 1570468064.0, 1570468125.0, 1570468186.0, 1570468247.0, 1570468308.0, 1570468369.0, 1570468430.0, 1570468491.0, 1570468552.0, 1570468613.0, 1570468674.0, 1570468735.0, 1570468796.0, 1570468857.0, 1570468918.0, 1570468979.0, 1570469040.0, 1570469101.0, 1570469162.0, 1570469223.0, 1570469284.0, 1570469345.0, 1570469406.0, 1570469467.0, 1570469528.0, 1570469589.0, 1570469650.0, 1570469711.0, 1570469772.0, 1570469833.0, 1570469894.0, 1570469955.0, 1570470016.0, 1570470077.0, 1570470138.0, 1570470199.0, 1570470260.0, 1570470321.0, 1570470382.0, 1570470443.0, 1570470504.0, 1570470565.0, 1570470626.0, 1570470687.0, 1570470748.0, 1570470809.0, 1570470870.0, 1570470931.0, 1570470992.0, 1570471053.0, 1570471114.0, 1570471175.0, 1570471236.0, 1570471297.0, 1570471358.0, 1570471419.0, 1570471480.0, 1570471541.0, 1570471602.0, 1570471663.0, 1570471724.0, 1570471785.0, 1570471846.0, 1570471907.0, 1570471968.0, 1570472029.0, 1570472090.0, 1570472151.0, 1570472212.0, 1570472273.0, 1570472334.0, 1570472395.0, 1570472456.0, 1570472517.0, 1570472578.0, 1570472639.0, 1570472700.0, 1570472761.0, 1570472822.0, 1570472883.0, 1570472944.0, 1570473005.0, 1570473066.0, 1570473127.0, 1570473188.0, 1570473249.0, 1570473310.0, 1570473371.0, 1570473432.0, 1570473493.0, 1570473554.0, 1570473615.0, 1570473676.0, 1570473737.0, 1570473798.0, 1570473859.0, 1570473920.0, 1570473981.0, 1570474042.0, 1570474103.0, 1570474164.0, 1570474225.0, 1570474286.0, 1570474347.0, 1570474408.0, 1570474469.0, 1570474530.0, 1570474591.0, 1570474652.0, 1570474713.0, 1570474774.0, 1570474835.0, 1570474896.0, 1570474957.0, 1570475018.0, 1570475079.0, 1570475140.0, 1570475201.0, 1570475262.0, 1570475323.0, 1570475384.0, 1570475445.0, 1570475506.0, 1570475567.0, 1570475628.0, 1570475689.0, 1570475750.0, 1570475811.0, 1570475872.0, 1570475933.0, 1570475994.0, 1570476055.0, 1570476116.0, 1570476177.0, 1570476238.0, 1570476299.0, 1570476360.0, 1570476421.0, 1570476482.0, 1570476543.0, 1570476604.0, 1570476665.0, 1570476726.0, 1570476787.0, 1570476848.0, 1570476909.0, 1570476970.0, 1570477031.0, 1570477092.0, 1570477153.0, 1570477214.0, 1570477275.0, 1570477336.0, 1570477397.0, 1570477458.0, 1570477519.0, 1570477580.0, 1570477641.0, 1570477702.0, 1570477763.0, 1570477824.0, 1570477885.0, 1570477946.0, 1570478007.0, 1570478068.0, 1570478129.0, 1570478190.0, 1570478251.0, 1570478312.0, 1570478373.0, 1570478434.0, 1570478495.0, 1570478556.0, 1570478617.0, 1570478678.0, 1570478739.0, 1570478800.0, 1570478861.0, 1570478922.0, 1570478983.0, 1570479044.0, 1570479105.0, 1570479166.0, 1570479227.0, 1570479288.0, 1570479349.0, 1570479410.0, 1570479471.0, 1570479532.0, 1570479593.0, 1570479654.0, 1570479715.0, 1570479776.0, 1570479837.0, 1570479898.0, 1570479959.0, 1570480020.0, 1570480081.0, 1570480142.0, 1570480203.0, 1570480264.0, 1570480325.0, 1570480386.0, 1570480447.0, 1570480508.0, 1570480569.0, 1570480630.0, 1570480691.0, 1570480752.0, 1570480813.0, 1570480874.0, 1570480935.0, 1570480996.0, 1570481057.0, 1570481118.0, 1570481179.0, 1570481240.0, 1570481301.0, 1570481362.0, 1570481423.0, 1570481484.0, 1570481545.0, 1570481606.0, 1570481667.0, 1570481728.0, 1570481789.0, 1570481850.0, 1570481911.0, 1570481972.0, 1570482033.0, 1570482094.0, 1570482155.0, 1570482216.0, 1570482277.0, 1570482338.0, 1570482399.0, 1570482460.0, 1570482521.0, 1570482582.0, 1570482643.0, 1570482704.0, 1570482765.0, 1570482826.0, 1570482887.0, 1570482948.0, 1570483009.0, 1570483070.0, 1570483131.0, 1570483192.0, 1570483253.0, 1570483314.0, 1570483375.0, 1570483436.0], y=[] (must be same and length>=2)
2019-10-07 21:24:39,119 | DEBUG | queue_monitor | pilot.util.auxiliary.4495584546 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=9735442"
2019-10-07 21:24:39,119 | INFO | queue_monitor | pilot.control.job.4495584546 | get_data_structure | total number of processed events: 200 (read)
2019-10-07 21:24:39,119 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/dcameron/boinc/slots/1/PanDA_Pilot-4495584546/memory_monitor_summary.json (trf name=prmon)
2019-10-07 21:24:39,120 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 774880, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 999094973, 'wtime': 18245, 'rss': 9544232, 'write_bytes': 0, 'vmem': 14159984, 'read_bytes': 0, 'stime': 134, 'tx_bytes': 807624232, 'pss': 2780017, 'wchar': 0, 'rchar': 0, 'tx_packets': 506624, 'swap': 0, 'utime': 72485}, 'Avg': {'write_bytes': 0, 'nprocs': 8, 'nthreads': 0, 'rx_bytes': 54758, 'rx_packets': 42, 'vmem': 13837477, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 44264, 'pss': 2677592, 'wchar': 0, 'rchar': 0, 'tx_packets': 27, 'rss': 9240536}}
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | ..............................
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . Timing measurements:
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . get job = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . initial setup = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . payload setup = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . total setup = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . stage-in = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . payload execution = 18284 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . stage-out = 1 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | ..............................
2019-10-07 21:24:39,121 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-07 21:24:39,121 | DEBUG | queue_monitor | pilot.util.auxiliary.4495584546 | get_panda_tracer_log | PanDA tracer log does not exist: /home/dcameron/boinc/slots/1/PanDA_Pilot-4495584546/pandatracerlog.txt (ignoring)
2019-10-07 21:24:39,121 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/dcameron/boinc/slots/1/PanDA_Pilot-4495584546/pilotlog.txt
2019-10-07 21:24:39,131 | WARNING | queue_monitor | pilot.util.auxiliary.4495584546 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-10-07 21:24:39,119 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570465197.0, 1570465258.0, 1570465319.0, 1570465380.0, 1570465441.0, 1570465502.0, 1570465563.0, 1570465624.0, 1570465685.0, 1570465746.0, 1570465807.0, 1570465868.0, 1570465929.0, 1570465990.0, 1570466051.0, 1570466112.0, 1570466173.0, 1570466234.0, 1570466295.0, 1570466356.0, 1570466417.0, 1570466478.0, 1570466539.0, 1570466600.0, 1570466661.0, 1570466722.0, 1570466783.0, 1570466844.0, 1570466905.0, 1570466966.0, 1570467027.0, 1570467088.0, 1570467149.0, 1570467210.0, 1570467271.0, 1570467332.0, 1570467393.0, 1570467454.0, 1570467515.0, 1570467576.0, 1570467637.0, 1570467698.0, 1570467759.0, 1570467820.0, 1570467881.0, 1570467942.0, 1570468003.0, 1570468064.0, 1570468125.0, 1570468186.0, 1570468247.0, 1570468308.0, 1570468369.0, 1570468430.0, 1570468491.0, 1570468552.0, 1570468613.0, 1570468674.0, 1570468735.0, 1570468796.0, 1570468857.0, 1570468918.0, 1570468979.0, 1570469040.0, 1570469101.0, 1570469162.0, 1570469223.0, 1570469284.0, 1570469345.0, 1570469406.0, 1570469467.0, 1570469528.0, 1570469589.0, 1570469650.0, 1570469711.0, 1570469772.0, 1570469833.0, 1570469894.0, 1570469955.0, 1570470016.0, 1570470077.0, 1570470138.0, 1570470199.0, 1570470260.0, 1570470321.0, 1570470382.0, 1570470443.0, 1570470504.0, 1570470565.0, 1570470626.0, 1570470687.0, 1570470748.0, 1570470809.0, 1570470870.0, 1570470931.0, 1570470992.0, 1570471053.0, 1570471114.0, 1570471175.0, 1570471236.0, 1570471297.0, 1570471358.0, 1570471419.0, 1570471480.0, 1570471541.0, 1570471602.0, 1570471663.0, 1570471724.0, 1570471785.0, 1570471846.0, 1570471907.0, 1570471968.0, 1570472029.0, 1570472090.0, 1570472151.0, 1570472212.0, 1570472273.0, 1570472334.0, 1570472395.0, 1570472456.0, 1570472517.0, 1570472578.0, 1570472639.0, 1570472700.0, 1570472761.0, 1570472822.0, 1570472883.0, 1570472944.0, 1570473005.0, 1570473066.0, 1570473127.0, 1570473188.0, 1570473249.0, 1570473310.0, 1570473371.0, 1570473432.0, 1570473493.0, 1570473554.0, 1570473615.0, 1570473676.0, 1570473737.0, 1570473798.0, 1570473859.0, 1570473920.0, 1570473981.0, 1570474042.0, 1570474103.0, 1570474164.0, 1570474225.0, 1570474286.0, 1570474347.0, 1570474408.0, 1570474469.0, 1570474530.0, 1570474591.0, 1570474652.0, 1570474713.0, 1570474774.0, 1570474835.0, 1570474896.0, 1570474957.0, 1570475018.0, 1570475079.0, 1570475140.0, 1570475201.0, 1570475262.0, 1570475323.0, 1570475384.0, 1570475445.0, 1570475506.0, 1570475567.0, 1570475628.0, 1570475689.0, 1570475750.0, 1570475811.0, 1570475872.0, 1570475933.0, 1570475994.0, 1570476055.0, 1570476116.0, 1570476177.0, 1570476238.0, 1570476299.0, 1570476360.0, 1570476421.0, 1570476482.0, 1570476543.0, 1570476604.0, 1570476665.0, 1570476726.0, 1570476787.0, 1570476848.0, 1570476909.0, 1570476970.0, 1570477031.0, 1570477092.0, 1570477153.0, 1570477214.0, 1570477275.0, 1570477336.0, 1570477397.0, 1570477458.0, 1570477519.0, 1570477580.0, 1570477641.0, 1570477702.0, 1570477763.0, 1570477824.0, 1570477885.0, 1570477946.0, 1570478007.0, 1570478068.0, 1570478129.0, 1570478190.0, 1570478251.0, 1570478312.0, 1570478373.0, 1570478434.0, 1570478495.0, 1570478556.0, 1570478617.0, 1570478678.0, 1570478739.0, 1570478800.0, 1570478861.0, 1570478922.0, 1570478983.0, 1570479044.0, 1570479105.0, 1570479166.0, 1570479227.0, 1570479288.0, 1570479349.0, 1570479410.0, 1570479471.0, 1570479532.0, 1570479593.0, 1570479654.0, 1570479715.0, 1570479776.0, 1570479837.0, 1570479898.0, 1570479959.0, 1570480020.0, 1570480081.0, 1570480142.0, 1570480203.0, 1570480264.0, 1570480325.0, 1570480386.0, 1570480447.0, 1570480508.0, 1570480569.0, 1570480630.0, 1570480691.0, 1570480752.0, 1570480813.0, 1570480874.0, 1570480935.0, 1570480996.0, 1570481057.0, 1570481118.0, 1570481179.0, 1570481240.0, 1570481301.0, 1570481362.0, 1570481423.0, 1570481484.0, 1570481545.0, 1570481606.0, 1570481667.0, 1570481728.0, 1570481789.0, 1570481850.0, 1570481911.0, 1570481972.0, 1570482033.0, 1570482094.0, 1570482155.0, 1570482216.0, 1570482277.0, 1570482338.0, 1570482399.0, 1570482460.0, 1570482521.0, 1570482582.0, 1570482643.0, 1570482704.0, 1570482765.0, 1570482826.0, 1570482887.0, 1570482948.0, 1570483009.0, 1570483070.0, 1570483131.0, 1570483192.0, 1570483253.0, 1570483314.0, 1570483375.0, 1570483436.0], y=[] (must be same and length>=2)
2019-10-07 21:24:39,119 | DEBUG | queue_monitor | pilot.util.auxiliary.4495584546 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=9735442"
2019-10-07 21:24:39,119 | INFO | queue_monitor | pilot.control.job.4495584546 | get_data_structure | total number of processed events: 200 (read)
2019-10-07 21:24:39,119 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/dcameron/boinc/slots/1/PanDA_Pilot-4495584546/memory_monitor_summary.json (trf name=prmon)
2019-10-07 21:24:39,120 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 774880, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 999094973, 'wtime': 18245, 'rss': 9544232, 'write_bytes': 0, 'vmem': 14159984, 'read_bytes': 0, 'stime': 134, 'tx_bytes': 807624232, 'pss': 2780017, 'wchar': 0, 'rchar': 0, 'tx_packets': 506624, 'swap': 0, 'utime': 72485}, 'Avg': {'write_bytes': 0, 'nprocs': 8, 'nthreads': 0, 'rx_bytes': 54758, 'rx_packets': 42, 'vmem': 13837477, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 44264, 'pss': 2677592, 'wchar': 0, 'rchar': 0, 'tx_packets': 27, 'rss': 9240536}}
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | ..............................
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . Timing measurements:
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . get job = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . initial setup = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . payload setup = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . total setup = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . stage-in = 0 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . payload execution = 18284 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | . stage-out = 1 s
2019-10-07 21:24:39,120 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | timing_report | ..............................
2019-10-07 21:24:39,121 | INFO | queue_monitor | pilot.util.auxiliary.4495584546 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-07 21:24:39,121 | DEBUG | queue_monitor | pilot.util.auxiliary.4495584546 | get_panda_tracer_log | PanDA tracer log does not exist: /home/dcameron/boinc/slots/1/PanDA_Pilot-4495584546/pandatracerlog.txt (ignoring)
2019-10-07 21:24:39,121 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/dcameron/boinc/slots/1/PanDA_Pilot-4495584546/pilotlog.txt
2019-10-07 21:24:39,131 | DEBUG | queue_monitor | pilot.control.job.4495584546 | send_state | wrote heartbeat to file /home/dcameron/boinc/slots/1/heartbeat.json
2019-10-07 21:24:39,131 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4495584546 was dequeued from the monitored payloads queue
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report |
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | job summary report
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | --------------------------------------------------
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | PanDA job id: 4495584546
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | task id: 19000492
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | errors: (none)
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | status: LOG_TRANSFER = DONE
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | pilot state: finished
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | transexitcode: 0
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | exeerrorcode: 0
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | exeerrordiag:
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | exitcode: 0
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | exitmsg: OK
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | cpuconsumptiontime: 72206 s
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | nevents: 200
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | neventsw: 0
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | pid: 186305
2019-10-07 21:24:39,482 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | pgrp: 186305
2019-10-07 21:24:39,483 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | corecount: 4
2019-10-07 21:24:39,483 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | event service: False
2019-10-07 21:24:39,483 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report | --------------------------------------------------
2019-10-07 21:24:39,483 | INFO | retrieve | pilot.util.auxiliary.4495584546 | make_job_report |
2019-10-07 21:24:39,483 | INFO | retrieve | pilot.control.job.4495584546 | has_job_completed | job 4495584546 has completed
2019-10-07 21:24:39,483 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-10-07 21:24:39,486 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/dcameron/boinc/slots/1/PanDA_Pilot-4495584546
2019-10-07 21:24:40,492 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [186305]
2019-10-07 21:24:40,492 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 186305
2019-10-07 21:24:40,492 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-10-07 21:24:41,497 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-10-07 21:24:41,497 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=186305
2019-10-07 21:24:41,551 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [186305] (in reverse order)
2019-10-07 21:24:41,579 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-10-07 21:24:41,579 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-10-07 21:24:41,579 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-10-07 21:24:41,579 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-10-07 21:24:41,581 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 21:24:41,581 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) ***
2019-10-07 21:24:41,581 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 21:24:41,581 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
2019-10-07 21:24:41,582 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
2019-10-07 21:24:41,615 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.6.1810 (Core)
Release: 7.6.1810
Codename: Core
2019-10-07 21:24:41,615 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 21:24:42,117 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/dcameron/boinc/slots/1
2019-10-07 21:24:42,126 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (70535610368 B)
2019-10-07 21:24:42,127 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-10-07 21:24:42,127 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-10-07 21:24:42,166 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-10-07 21:24:42,310 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-10-07 21:24:42,373 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-10-07 21:24:42,374 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-10-07 21:24:42,415 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads
2019-10-07 21:24:42,415 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(job, started 140148799158016)>, <ExcThread(failed_post, started 140147794372352)>, <ExcThread(validate_pre, started 140148364781312)>, <ExcThread(queue_monitor, started 140148356388608)>, <ExcThread(validate, started 140148790765312)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>, <ExcThread(validate_post, started 140147802765056)>, <ExcThread(create_data_payload, started 140148773979904)>, <ExcThread(data, started 140148782372608)>, <ExcThread(copytool_out, started 140148757194496)>, <ExcThread(copytool_in, started 140148373174016)>]
2019-10-07 21:24:42,710 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-10-07 21:24:42,716 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads
2019-10-07 21:24:42,716 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(job, started 140148799158016)>, <ExcThread(validate_pre, started 140148364781312)>, <ExcThread(queue_monitor, started 140148356388608)>, <ExcThread(validate, started 140148790765312)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>, <ExcThread(validate_post, started 140147802765056)>, <ExcThread(create_data_payload, started 140148773979904)>, <ExcThread(data, started 140148782372608)>, <ExcThread(copytool_out, started 140148757194496)>, <ExcThread(copytool_in, started 140148373174016)>]
2019-10-07 21:24:42,995 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-10-07 21:24:42,998 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-10-07 21:24:43,002 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-10-07 21:24:43,017 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads
2019-10-07 21:24:43,018 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(job, started 140148799158016)>, <ExcThread(queue_monitor, started 140148356388608)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>, <ExcThread(validate_post, started 140147802765056)>, <ExcThread(data, started 140148782372608)>, <ExcThread(copytool_out, started 140148757194496)>, <ExcThread(copytool_in, started 140148373174016)>]
2019-10-07 21:24:43,163 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-10-07 21:24:43,166 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-10-07 21:24:43,166 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-10-07 21:24:43,230 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-10-07 21:24:43,230 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-10-07 21:24:43,246 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads
2019-10-07 21:24:43,246 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(queue_monitor, started 140148356388608)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>, <ExcThread(validate_post, started 140147802765056)>, <ExcThread(copytool_out, started 140148757194496)>, <ExcThread(copytool_in, started 140148373174016)>]
2019-10-07 21:24:43,294 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-10-07 21:24:43,347 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads
2019-10-07 21:24:43,347 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(queue_monitor, started 140148356388608)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>, <ExcThread(validate_post, started 140147802765056)>, <ExcThread(copytool_out, started 140148757194496)>]
2019-10-07 21:24:43,407 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-10-07 21:24:43,448 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads
2019-10-07 21:24:43,448 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(queue_monitor, started 140148356388608)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>, <ExcThread(copytool_out, started 140148757194496)>]
2019-10-07 21:24:43,488 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-10-07 21:24:43,488 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-10-07 21:24:43,549 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
2019-10-07 21:24:43,549 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>, <ExcThread(copytool_out, started 140148757194496)>]
2019-10-07 21:24:44,163 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-10-07 21:24:44,254 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-10-07 21:24:44,254 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(job_monitor, started 140148389959424)>, <ExcThread(queue_monitoring, started 140148398352128)>]
2019-10-07 21:24:44,605 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-10-07 21:24:47,606 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-10-07 21:24:47,676 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-10-07 21:24:47,676 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140148960790336)>, <ExcThread(job_monitor, started 140148389959424)>]
2019-10-07 21:25:35,142 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
2019-10-07 21:25:35,143 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-10-07 21:25:35,179 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-10-07 21:25:35,179 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-10-07 21:25:35,179 | INFO | MainThread | root | wrap_up | pilot has finished
2019-10-07 21:25:35 UTC [wrapper] ==== pilot stdout END ====
2019-10-07 21:25:35 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-10-07 21:25:35 UTC [wrapper] Pilot exit status: 0
2019-10-07 21:25:35 UTC [wrapper] STATUSCODE: 0
2019-10-07 21:25:35 UTC [wrapper] apfmon messages muted
---- find pandaIDs.out ----
total 56
-rw-------. 1 dcameron zp 11357 Jul 25 16:38 LICENSE
-rw-------. 1 dcameron zp 20 Sep 9 13:04 MANIFEST.IN
-rw-------. 1 dcameron zp 11 Oct 7 18:19 pandaIDs.out
drwx------. 14 dcameron zp 216 Oct 7 18:19 pilot
-rwx------. 1 dcameron zp 20136 Sep 9 13:04 pilot.py
-rw-------. 1 dcameron zp 9 Sep 9 13:04 PILOTVERSION
-rw-------. 1 dcameron zp 2251 Jul 25 16:38 README.md
-rw-------. 1 dcameron zp 760 Aug 22 11:01 setup.py
-rw-------. 1 dcameron zp 221 Jul 25 16:38 TODO.md
2019-10-07 21:25:35 UTC [wrapper] pandaIDs.out files:
-rw-------. 1 dcameron zp 11 Oct 7 18:19 /home/dcameron/boinc/slots/1/pilot2/pandaIDs.out
2019-10-07 21:25:35 UTC [wrapper] pandaIDs.out content:
4495584546
2019-10-07 21:25:35 UTC [wrapper] Test setup, not cleaning
2019-10-07 21:25:35 UTC [wrapper] ==== wrapper stdout END ====
2019-10-07 21:25:35 UTC [wrapper] ==== wrapper stderr END ====
2019-10-07 21:25:35 UTC [wrapper] wrapper wrapperexiting ec=0, duration=18371
2019-10-07 21:25:35 UTC [wrapper] apfmon messages muted
2019-10-07 23:25:35,342: ***************diag file************
2019-10-07 23:25:35,343: runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=18371.02s
KernelTime=430.86s
UserTime=71933.25s
CPUUsage=393%
MaxResidentMemory=1954508kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=23515
MinorPageFaults=20288003
Swaps=0
ForcedSwitches=486932
WaitSwitches=10752619
Inputs=7733250
Outputs=1042648
SocketReceived=0
SocketSent=0
Signals=0
nodename=David_Cameron@pcoslo5.cern.ch
exitcode=0
2019-10-07 23:25:35,346: ******************************WorkDir***********************
2019-10-07 23:25:35,346: total 269168
drwxrwx--x. 7 dcameron zp 4096 Oct 7 23:25 .
drwxrwx--x. 4 dcameron zp 24 Oct 7 12:10 ..
-rw-------. 1 dcameron zp 513 Oct 7 23:25 3llKDmnCOavnShfckohDCDFpABFKDmABFKDmmsKVDmABFKDmnsh0Fm.diag
-rw-------. 1 dcameron zp 7595462 Oct 7 18:19 agis_ddmendpoints.json
-rw-------. 1 dcameron zp 3957811 Oct 7 18:19 agis_schedconf.cvmfs.json
drwx------. 2 dcameron zp 6 Oct 7 18:19 .alrb
drwxr-xr-x. 3 dcameron zp 17 Oct 7 18:19 APPS
-rw-------. 1 dcameron zp 548 Oct 7 18:19 .asetup
-rw-------. 1 dcameron zp 4130 Oct 7 18:19 .asetup.save
drwx------. 2 dcameron zp 6 Oct 7 18:19 .asetup-sysbin_186306
-rw-r--r--. 1 dcameron zp 0 Oct 7 18:19 boinc_lockfile
-rw-r--r--. 1 dcameron zp 8192 Oct 7 23:25 boinc_mmap_file
-rw-r--r--. 1 dcameron zp 537 Oct 7 23:17 boinc_task_state.xml
-rw-r--r--. 1 dcameron zp 261333742 Oct 7 18:19 EVNT.18605549._000396.pool.root.1
-rw-------. 1 dcameron zp 62478 Oct 7 23:24 heartbeat.json
-rw-r--r--. 1 dcameron zp 6245 Oct 7 18:19 init_data.xml
-rw-r--r--. 1 dcameron zp 267508 Oct 7 18:19 input.tar.gz
-rw-r--r--. 1 dcameron zp 112 Oct 7 18:19 job.xml
-rw-------. 1 dcameron zp 1072919 Oct 7 23:25 log.19000492._019992.job.log.1
-rw-------. 1 dcameron zp 874693 Oct 7 23:24 log.19000492._019992.job.log.tgz.1
-rw-------. 1 dcameron zp 796 Oct 7 23:24 memory_monitor_summary.json
-rw-------. 1 dcameron zp 463 Oct 7 23:25 output.list
-rw-------. 1 dcameron zp 2842 Oct 3 23:52 pandaJobData.out
drwx------. 3 dcameron zp 229 Oct 7 18:19 pilot2
-rw-r--r--. 1 dcameron zp 259319 Oct 3 23:23 pilot2.tar.gz
-rw-------. 1 dcameron zp 11793 Oct 7 23:25 pilotlog.txt
-rw-r--r--. 1 dcameron zp 4480 Oct 3 23:52 queuedata.json
-rw-r--r--. 1 dcameron zp 815 Oct 7 18:19 RTE.tar.gz
-rwxr-xr-x. 1 dcameron zp 7950 Oct 7 18:19 run_atlas
-rwx------. 1 dcameron zp 12762 Oct 3 23:52 runpilot2-wrapper.sh
-rw-r--r--. 1 dcameron zp 692 Oct 7 23:25 runtime_log
-rw-r--r--. 1 dcameron zp 8048 Oct 7 23:25 runtime_log.err
-rw-------. 1 dcameron zp 240 Oct 7 18:19 setup.sh.local
drwxrwx--x. 2 dcameron zp 131 Oct 7 23:25 shared
-rw-r--r--. 1 dcameron zp 8688 Oct 7 18:19 start_atlas.sh
-rw-r--r--. 1 dcameron zp 39025 Oct 7 23:25 stderr.txt
-rw-r--r--. 1 dcameron zp 107 Oct 7 18:19 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 dcameron zp 28 Oct 7 23:25 wrapper_checkpoint.txt
2019-10-07 23:25:35,347: running start_atlas return value is 0
2019-10-07 23:25:35,347: Parent exit 0
2019-10-07 23:25:35,347: child process exit 0
23:25:36 (179286): run_atlas exited; CPU time 71933.558311
23:25:36 (179286): called boinc_finish(0)
</stderr_txt>
]]>
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