| Name | ZHsMDm26tZvnShfckohDCDFpABFKDmABFKDm3aUUDmABFKDm4ZG1Jn_1 |
| Workunit | 1942853 |
| Created | 4 Oct 2019, 4:13:25 UTC |
| Sent | 6 Oct 2019, 21:22:20 UTC |
| Report deadline | 13 Oct 2019, 21:22:20 UTC |
| Received | 7 Oct 2019, 4:44:17 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3911 |
| Run time | 7 hours 20 min 33 sec |
| CPU time | 1 days 3 hours 58 min 34 sec |
| Validate state | Valid |
| Credit | 712.03 |
| Device peak FLOPS | 11.64 GFLOPS |
| Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.81 GB |
| Peak swap size | 2.58 GB |
| Peak disk usage | 962.92 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:22:30 (26067): wrapper (7.7.26015): starting
23:22:30 (26067): wrapper: running run_atlas (--nthreads 4)
2019-10-06 23:22:32,514: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
2019-10-06 23:22:32,515: sys.argv = ['run_atlas', '--nthreads', '4']
2019-10-06 23:22:32,516: THREADS=4
2019-10-06 23:22:32,518: Checking for CVMFS
2019-10-06 23:22:34,979: CVMFS is installed
2019-10-06 23:22:34,980: Checking Singularity...
2019-10-06 23:22:36,936: Singularity is installed, version singularity version 3.2.1-1
2019-10-06 23:22:36,936: Testing the function of Singularity...
2019-10-06 23:22:36,936: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
2019-10-06 23:22:59,546: Singularity Works...
2019-10-06 23:22:59,547: copy /home/grid/slots/0/shared/ATLAS.root_0
2019-10-06 23:23:00,025: copy /home/grid/slots/0/shared/input.tar.gz
2019-10-06 23:23:00,026: copy /home/grid/slots/0/shared/RTE.tar.gz
2019-10-06 23:23:00,027: copy /home/grid/slots/0/shared/start_atlas.sh
2019-10-06 23:23:00,027: export ATHENA_PROC_NUMBER=4;
2019-10-06 23:23:00,058: start atlas job with PandaID=4495384869
2019-10-06 23:23:00,058: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err
2019-10-07 06:43:02,214: running cmd return value is 0
2019-10-07 06:43:02,220: Moving ./HITS.19056279._004551.pool.root.1 to shared/HITS.pool.root.1
2019-10-07 06:43:02,220: HITS result file:
2019-10-07 06:43:02,242: -rw-------. 1 grid grid 247513921 Oct 7 06:41 shared/HITS.pool.root.1
2019-10-07 06:43:02,243: *****************The last 200 lines of the pilot log******************
2019-10-07 06:43:02,249: "total": {
"cpuTime": 83,
"wallTime": 167
},
"validation": {
"cpuTime": 0,
"wallTime": 0
},
"wallTime": 163
}
},
"machine": {
"cpu_family": "6",
"linux_distribution": [
"CentOS Linux",
"7.6.1810",
"Core"
],
"model": "61",
"model_name": "Intel Core Processor (Broadwell, IBRS)",
"node": "dcameron04.cern.ch",
"platform": "Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
},
"transform": {
"cpuEfficiency": 0.9588,
"cpuPWEfficiency": 0.9614,
"cpuTime": 9,
"cpuTimeTotal": 100831,
"externalCpuTime": 214,
"processedEvents": 200,
"trfPredata": null,
"wallTime": 26215
}
}
}
2019-10-07 04:42:08,694 | DEBUG | queue_monitor | pilot.util.auxiliary.4495384869 | update_server | xml:will send fileinfo
2019-10-07 04:42:08,694 | INFO | queue_monitor | pilot.control.job.4495384869 | send_state | pilot will not update the server (heartbeat message will be written to file)
2019-10-07 04:42:08,695 | INFO | queue_monitor | pilot.control.job.4495384869 | send_state | job 4495384869 has finished - writing final server update
2019-10-07 04:42:08,700 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570397072.0, 1570397133.0, 1570397194.0, 1570397255.0, 1570397316.0, 1570397377.0, 1570397438.0, 1570397499.0, 1570397560.0, 1570397621.0, 1570397682.0, 1570397743.0, 1570397804.0, 1570397865.0, 1570397926.0, 1570397987.0, 1570398048.0, 1570398109.0, 1570398170.0, 1570398231.0, 1570398292.0, 1570398353.0, 1570398414.0, 1570398475.0, 1570398536.0, 1570398597.0, 1570398658.0, 1570398719.0, 1570398780.0, 1570398841.0, 1570398902.0, 1570398963.0, 1570399024.0, 1570399085.0, 1570399146.0, 1570399207.0, 1570399268.0, 1570399329.0, 1570399390.0, 1570399451.0, 1570399512.0, 1570399573.0, 1570399634.0, 1570399695.0, 1570399756.0, 1570399817.0, 1570399878.0, 1570399939.0, 1570400000.0, 1570400061.0, 1570400122.0, 1570400183.0, 1570400244.0, 1570400305.0, 1570400366.0, 1570400427.0, 1570400488.0, 1570400549.0, 1570400610.0, 1570400671.0, 1570400732.0, 1570400793.0, 1570400854.0, 1570400915.0, 1570400976.0, 1570401037.0, 1570401098.0, 1570401159.0, 1570401220.0, 1570401281.0, 1570401342.0, 1570401403.0, 1570401464.0, 1570401525.0, 1570401586.0, 1570401647.0, 1570401708.0, 1570401769.0, 1570401830.0, 1570401891.0, 1570401952.0, 1570402013.0, 1570402074.0, 1570402135.0, 1570402196.0, 1570402257.0, 1570402318.0, 1570402379.0, 1570402440.0, 1570402501.0, 1570402562.0, 1570402623.0, 1570402684.0, 1570402745.0, 1570402806.0, 1570402867.0, 1570402928.0, 1570402989.0, 1570403050.0, 1570403111.0, 1570403172.0, 1570403233.0, 1570403294.0, 1570403355.0, 1570403416.0, 1570403477.0, 1570403538.0, 1570403599.0, 1570403660.0, 1570403721.0, 1570403782.0, 1570403843.0, 1570403904.0, 1570403965.0, 1570404026.0, 1570404087.0, 1570404148.0, 1570404209.0, 1570404270.0, 1570404331.0, 1570404392.0, 1570404453.0, 1570404514.0, 1570404575.0, 1570404636.0, 1570404697.0, 1570404758.0, 1570404819.0, 1570404880.0, 1570404941.0, 1570405002.0, 1570405063.0, 1570405124.0, 1570405185.0, 1570405246.0, 1570405307.0, 1570405368.0, 1570405429.0, 1570405490.0, 1570405551.0, 1570405612.0, 1570405673.0, 1570405734.0, 1570405795.0, 1570405856.0, 1570405917.0, 1570405978.0, 1570406039.0, 1570406100.0, 1570406161.0, 1570406222.0, 1570406283.0, 1570406344.0, 1570406405.0, 1570406466.0, 1570406527.0, 1570406588.0, 1570406649.0, 1570406710.0, 1570406771.0, 1570406832.0, 1570406893.0, 1570406954.0, 1570407015.0, 1570407076.0, 1570407137.0, 1570407198.0, 1570407259.0, 1570407320.0, 1570407381.0, 1570407442.0, 1570407503.0, 1570407564.0, 1570407625.0, 1570407686.0, 1570407747.0, 1570407808.0, 1570407869.0, 1570407930.0, 1570407991.0, 1570408052.0, 1570408113.0, 1570408174.0, 1570408235.0, 1570408296.0, 1570408357.0, 1570408418.0, 1570408479.0, 1570408540.0, 1570408601.0, 1570408662.0, 1570408723.0, 1570408784.0, 1570408845.0, 1570408906.0, 1570408967.0, 1570409028.0, 1570409089.0, 1570409150.0, 1570409211.0, 1570409272.0, 1570409333.0, 1570409394.0, 1570409455.0, 1570409516.0, 1570409577.0, 1570409638.0, 1570409699.0, 1570409760.0, 1570409821.0, 1570409882.0, 1570409943.0, 1570410004.0, 1570410065.0, 1570410126.0, 1570410187.0, 1570410248.0, 1570410309.0, 1570410370.0, 1570410431.0, 1570410492.0, 1570410553.0, 1570410614.0, 1570410675.0, 1570410736.0, 1570410797.0, 1570410858.0, 1570410919.0, 1570410980.0, 1570411041.0, 1570411102.0, 1570411163.0, 1570411224.0, 1570411285.0, 1570411346.0, 1570411407.0, 1570411468.0, 1570411529.0, 1570411590.0, 1570411651.0, 1570411712.0, 1570411773.0, 1570411834.0, 1570411895.0, 1570411956.0, 1570412017.0, 1570412078.0, 1570412139.0, 1570412200.0, 1570412261.0, 1570412322.0, 1570412383.0, 1570412444.0, 1570412505.0, 1570412566.0, 1570412627.0, 1570412688.0, 1570412749.0, 1570412810.0, 1570412871.0, 1570412932.0, 1570412993.0, 1570413054.0, 1570413115.0, 1570413176.0, 1570413237.0, 1570413298.0, 1570413359.0, 1570413420.0, 1570413481.0, 1570413542.0, 1570413603.0, 1570413664.0, 1570413725.0, 1570413786.0, 1570413847.0, 1570413908.0, 1570413969.0, 1570414030.0, 1570414091.0, 1570414152.0, 1570414213.0, 1570414274.0, 1570414335.0, 1570414396.0, 1570414457.0, 1570414518.0, 1570414579.0, 1570414640.0, 1570414701.0, 1570414762.0, 1570414823.0, 1570414884.0, 1570414945.0, 1570415006.0, 1570415067.0, 1570415128.0, 1570415189.0, 1570415250.0, 1570415311.0, 1570415372.0, 1570415433.0, 1570415494.0, 1570415555.0, 1570415616.0, 1570415677.0, 1570415738.0, 1570415799.0, 1570415860.0, 1570415921.0, 1570415982.0, 1570416043.0, 1570416104.0, 1570416165.0, 1570416226.0, 1570416287.0, 1570416348.0, 1570416409.0, 1570416470.0, 1570416531.0, 1570416592.0, 1570416653.0, 1570416714.0, 1570416775.0, 1570416836.0, 1570416897.0, 1570416958.0, 1570417019.0, 1570417080.0, 1570417141.0, 1570417202.0, 1570417263.0, 1570417324.0, 1570417385.0, 1570417446.0, 1570417507.0, 1570417568.0, 1570417629.0, 1570417690.0, 1570417751.0, 1570417812.0, 1570417873.0, 1570417934.0, 1570417995.0, 1570418056.0, 1570418117.0, 1570418178.0, 1570418239.0, 1570418300.0, 1570418361.0, 1570418422.0, 1570418483.0, 1570418544.0, 1570418605.0, 1570418666.0, 1570418727.0, 1570418788.0, 1570418849.0, 1570418910.0, 1570418971.0, 1570419032.0, 1570419093.0, 1570419154.0, 1570419215.0, 1570419276.0, 1570419337.0, 1570419398.0, 1570419459.0, 1570419520.0, 1570419581.0, 1570419642.0, 1570419703.0, 1570419764.0, 1570419825.0, 1570419886.0, 1570419947.0, 1570420008.0, 1570420069.0, 1570420130.0, 1570420191.0, 1570420252.0, 1570420313.0, 1570420374.0, 1570420435.0, 1570420496.0, 1570420557.0, 1570420618.0, 1570420679.0, 1570420740.0, 1570420801.0, 1570420862.0, 1570420923.0, 1570420984.0, 1570421045.0, 1570421106.0, 1570421167.0, 1570421228.0, 1570421289.0, 1570421350.0, 1570421411.0, 1570421472.0, 1570421533.0, 1570421594.0, 1570421655.0, 1570421716.0, 1570421777.0, 1570421838.0, 1570421899.0, 1570421960.0, 1570422021.0, 1570422082.0, 1570422143.0, 1570422204.0, 1570422265.0, 1570422326.0, 1570422387.0, 1570422448.0, 1570422509.0, 1570422570.0, 1570422631.0, 1570422692.0, 1570422753.0, 1570422814.0, 1570422875.0, 1570422936.0, 1570422997.0, 1570423058.0, 1570423119.0, 1570423180.0, 1570423241.0, 1570423302.0], y=[] (must be same and length>=2)
2019-10-07 04:42:08,700 | DEBUG | queue_monitor | pilot.util.auxiliary.4495384869 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=89084649"
2019-10-07 04:42:08,700 | INFO | queue_monitor | pilot.control.job.4495384869 | get_data_structure | total number of processed events: 200 (read)
2019-10-07 04:42:08,702 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4495384869/memory_monitor_summary.json (trf name=prmon)
2019-10-07 04:42:08,703 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1846499, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 1002808490, 'wtime': 26243, 'rss': 9469092, 'write_bytes': 0, 'vmem': 14160620, 'read_bytes': 0, 'stime': 254, 'tx_bytes': 52754323, 'pss': 2702583, 'wchar': 0, 'rchar': 0, 'tx_packets': 391286, 'swap': 0, 'utime': 101527}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 38212, 'rx_packets': 70, 'vmem': 13738387, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 2010, 'pss': 2577188, 'wchar': 0, 'rchar': 0, 'tx_packets': 14, 'rss': 9131256}}
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | ..............................
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . Timing measurements:
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . get job = 0 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . initial setup = 1 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . payload setup = 0 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . total setup = 1 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . stage-in = 0 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . payload execution = 26263 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . stage-out = 3 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | ..............................
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-07 04:42:08,704 | DEBUG | queue_monitor | pilot.util.auxiliary.4495384869 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4495384869/pandatracerlog.txt (ignoring)
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4495384869/pilotlog.txt
2019-10-07 04:42:08,771 | WARNING | queue_monitor | pilot.util.auxiliary.4495384869 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-10-07 04:42:08,700 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570397072.0, 1570397133.0, 1570397194.0, 1570397255.0, 1570397316.0, 1570397377.0, 1570397438.0, 1570397499.0, 1570397560.0, 1570397621.0, 1570397682.0, 1570397743.0, 1570397804.0, 1570397865.0, 1570397926.0, 1570397987.0, 1570398048.0, 1570398109.0, 1570398170.0, 1570398231.0, 1570398292.0, 1570398353.0, 1570398414.0, 1570398475.0, 1570398536.0, 1570398597.0, 1570398658.0, 1570398719.0, 1570398780.0, 1570398841.0, 1570398902.0, 1570398963.0, 1570399024.0, 1570399085.0, 1570399146.0, 1570399207.0, 1570399268.0, 1570399329.0, 1570399390.0, 1570399451.0, 1570399512.0, 1570399573.0, 1570399634.0, 1570399695.0, 1570399756.0, 1570399817.0, 1570399878.0, 1570399939.0, 1570400000.0, 1570400061.0, 1570400122.0, 1570400183.0, 1570400244.0, 1570400305.0, 1570400366.0, 1570400427.0, 1570400488.0, 1570400549.0, 1570400610.0, 1570400671.0, 1570400732.0, 1570400793.0, 1570400854.0, 1570400915.0, 1570400976.0, 1570401037.0, 1570401098.0, 1570401159.0, 1570401220.0, 1570401281.0, 1570401342.0, 1570401403.0, 1570401464.0, 1570401525.0, 1570401586.0, 1570401647.0, 1570401708.0, 1570401769.0, 1570401830.0, 1570401891.0, 1570401952.0, 1570402013.0, 1570402074.0, 1570402135.0, 1570402196.0, 1570402257.0, 1570402318.0, 1570402379.0, 1570402440.0, 1570402501.0, 1570402562.0, 1570402623.0, 1570402684.0, 1570402745.0, 1570402806.0, 1570402867.0, 1570402928.0, 1570402989.0, 1570403050.0, 1570403111.0, 1570403172.0, 1570403233.0, 1570403294.0, 1570403355.0, 1570403416.0, 1570403477.0, 1570403538.0, 1570403599.0, 1570403660.0, 1570403721.0, 1570403782.0, 1570403843.0, 1570403904.0, 1570403965.0, 1570404026.0, 1570404087.0, 1570404148.0, 1570404209.0, 1570404270.0, 1570404331.0, 1570404392.0, 1570404453.0, 1570404514.0, 1570404575.0, 1570404636.0, 1570404697.0, 1570404758.0, 1570404819.0, 1570404880.0, 1570404941.0, 1570405002.0, 1570405063.0, 1570405124.0, 1570405185.0, 1570405246.0, 1570405307.0, 1570405368.0, 1570405429.0, 1570405490.0, 1570405551.0, 1570405612.0, 1570405673.0, 1570405734.0, 1570405795.0, 1570405856.0, 1570405917.0, 1570405978.0, 1570406039.0, 1570406100.0, 1570406161.0, 1570406222.0, 1570406283.0, 1570406344.0, 1570406405.0, 1570406466.0, 1570406527.0, 1570406588.0, 1570406649.0, 1570406710.0, 1570406771.0, 1570406832.0, 1570406893.0, 1570406954.0, 1570407015.0, 1570407076.0, 1570407137.0, 1570407198.0, 1570407259.0, 1570407320.0, 1570407381.0, 1570407442.0, 1570407503.0, 1570407564.0, 1570407625.0, 1570407686.0, 1570407747.0, 1570407808.0, 1570407869.0, 1570407930.0, 1570407991.0, 1570408052.0, 1570408113.0, 1570408174.0, 1570408235.0, 1570408296.0, 1570408357.0, 1570408418.0, 1570408479.0, 1570408540.0, 1570408601.0, 1570408662.0, 1570408723.0, 1570408784.0, 1570408845.0, 1570408906.0, 1570408967.0, 1570409028.0, 1570409089.0, 1570409150.0, 1570409211.0, 1570409272.0, 1570409333.0, 1570409394.0, 1570409455.0, 1570409516.0, 1570409577.0, 1570409638.0, 1570409699.0, 1570409760.0, 1570409821.0, 1570409882.0, 1570409943.0, 1570410004.0, 1570410065.0, 1570410126.0, 1570410187.0, 1570410248.0, 1570410309.0, 1570410370.0, 1570410431.0, 1570410492.0, 1570410553.0, 1570410614.0, 1570410675.0, 1570410736.0, 1570410797.0, 1570410858.0, 1570410919.0, 1570410980.0, 1570411041.0, 1570411102.0, 1570411163.0, 1570411224.0, 1570411285.0, 1570411346.0, 1570411407.0, 1570411468.0, 1570411529.0, 1570411590.0, 1570411651.0, 1570411712.0, 1570411773.0, 1570411834.0, 1570411895.0, 1570411956.0, 1570412017.0, 1570412078.0, 1570412139.0, 1570412200.0, 1570412261.0, 1570412322.0, 1570412383.0, 1570412444.0, 1570412505.0, 1570412566.0, 1570412627.0, 1570412688.0, 1570412749.0, 1570412810.0, 1570412871.0, 1570412932.0, 1570412993.0, 1570413054.0, 1570413115.0, 1570413176.0, 1570413237.0, 1570413298.0, 1570413359.0, 1570413420.0, 1570413481.0, 1570413542.0, 1570413603.0, 1570413664.0, 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1570422387.0, 1570422448.0, 1570422509.0, 1570422570.0, 1570422631.0, 1570422692.0, 1570422753.0, 1570422814.0, 1570422875.0, 1570422936.0, 1570422997.0, 1570423058.0, 1570423119.0, 1570423180.0, 1570423241.0, 1570423302.0], y=[] (must be same and length>=2)
2019-10-07 04:42:08,700 | DEBUG | queue_monitor | pilot.util.auxiliary.4495384869 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=89084649"
2019-10-07 04:42:08,700 | INFO | queue_monitor | pilot.control.job.4495384869 | get_data_structure | total number of processed events: 200 (read)
2019-10-07 04:42:08,702 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4495384869/memory_monitor_summary.json (trf name=prmon)
2019-10-07 04:42:08,703 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1846499, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 1002808490, 'wtime': 26243, 'rss': 9469092, 'write_bytes': 0, 'vmem': 14160620, 'read_bytes': 0, 'stime': 254, 'tx_bytes': 52754323, 'pss': 2702583, 'wchar': 0, 'rchar': 0, 'tx_packets': 391286, 'swap': 0, 'utime': 101527}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 38212, 'rx_packets': 70, 'vmem': 13738387, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 2010, 'pss': 2577188, 'wchar': 0, 'rchar': 0, 'tx_packets': 14, 'rss': 9131256}}
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | ..............................
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . Timing measurements:
2019-10-07 04:42:08,703 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . get job = 0 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . initial setup = 1 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . payload setup = 0 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . total setup = 1 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . stage-in = 0 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . payload execution = 26263 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | . stage-out = 3 s
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | timing_report | ..............................
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.auxiliary.4495384869 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-07 04:42:08,704 | DEBUG | queue_monitor | pilot.util.auxiliary.4495384869 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4495384869/pandatracerlog.txt (ignoring)
2019-10-07 04:42:08,704 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4495384869/pilotlog.txt
2019-10-07 04:42:08,772 | DEBUG | queue_monitor | pilot.control.job.4495384869 | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json
2019-10-07 04:42:08,773 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4495384869 was dequeued from the monitored payloads queue
2019-10-07 04:42:09,556 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report |
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | job summary report
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | --------------------------------------------------
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | PanDA job id: 4495384869
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | task id: 19056279
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | errors: (none)
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | status: LOG_TRANSFER = DONE
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | pilot state: finished
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | transexitcode: 0
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | exeerrorcode: 0
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | exeerrordiag:
2019-10-07 04:42:09,557 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | exitcode: 0
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | exitmsg: OK
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | cpuconsumptiontime: 101161 s
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | nevents: 200
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | neventsw: 0
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | pid: 1083
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | pgrp: 1083
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | corecount: 4
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | event service: False
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report | --------------------------------------------------
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.util.auxiliary.4495384869 | make_job_report |
2019-10-07 04:42:09,558 | INFO | retrieve | pilot.control.job.4495384869 | has_job_completed | job 4495384869 has completed
2019-10-07 04:42:09,559 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-10-07 04:42:09,572 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4495384869
2019-10-07 04:42:10,577 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [1083]
2019-10-07 04:42:10,577 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 1083
2019-10-07 04:42:10,578 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-10-07 04:42:11,583 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-10-07 04:42:11,583 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=1083
2019-10-07 04:42:11,660 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [1083] (in reverse order)
2019-10-07 04:42:11,703 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-10-07 04:42:11,703 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-10-07 04:42:11,704 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-10-07 04:42:11,704 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-10-07 04:42:11,710 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 04:42:11,711 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) ***
2019-10-07 04:42:11,711 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 04:42:11,711 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
2019-10-07 04:42:11,711 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
2019-10-07 04:42:11,711 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
2019-10-07 04:42:11,793 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.6.1810 (Core)
Release: 7.6.1810
Codename: Core
2019-10-07 04:42:11,793 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 04:42:12,296 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0
2019-10-07 04:42:12,315 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (20714618880 B)
2019-10-07 04:42:12,315 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-10-07 04:42:12,315 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-10-07 04:42:12,319 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-10-07 04:42:12,333 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-10-07 04:42:12,346 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-10-07 04:42:12,348 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-10-07 04:42:12,507 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads
2019-10-07 04:42:12,507 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139711460104000)>, <ExcThread(job, started 139711298471680)>, <ExcThread(execute_payloads, started 139710420727552)>, <ExcThread(copytool_in, started 139711024707328)>, <ExcThread(data, started 139711290078976)>, <ExcThread(queue_monitoring, started 139711033100032)>, <ExcThread(queue_monitor, started 139710454298368)>, <ExcThread(copytool_out, started 139711273293568)>, <ExcThread(payload, started 139711049885440)>, <ExcThread(validate_post, started 139710437512960)>, <ExcThread(failed_post, started 139710429120256)>, <ExcThread(validate_pre, started 139711016314624)>, <ExcThread(job_monitor, started 139711007921920)>, <ExcThread(validate, started 139711281686272)>]
2019-10-07 04:42:12,698 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-10-07 04:42:12,706 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-10-07 04:42:12,706 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-10-07 04:42:12,809 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads
2019-10-07 04:42:12,809 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139711460104000)>, <ExcThread(job, started 139711298471680)>, <ExcThread(execute_payloads, started 139710420727552)>, <ExcThread(copytool_in, started 139711024707328)>, <ExcThread(data, started 139711290078976)>, <ExcThread(queue_monitoring, started 139711033100032)>, <ExcThread(queue_monitor, started 139710454298368)>, <ExcThread(copytool_out, started 139711273293568)>, <ExcThread(validate_post, started 139710437512960)>, <ExcThread(failed_post, started 139710429120256)>, <ExcThread(job_monitor, started 139711007921920)>, <ExcThread(validate, started 139711281686272)>]
2019-10-07 04:42:13,060 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-10-07 04:42:13,060 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-10-07 04:42:13,064 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-10-07 04:42:13,064 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-10-07 04:42:13,110 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads
2019-10-07 04:42:13,111 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139711460104000)>, <ExcThread(job, started 139711298471680)>, <ExcThread(data, started 139711290078976)>, <ExcThread(queue_monitoring, started 139711033100032)>, <ExcThread(queue_monitor, started 139710454298368)>, <ExcThread(copytool_out, started 139711273293568)>, <ExcThread(failed_post, started 139710429120256)>, <ExcThread(job_monitor, started 139711007921920)>]
2019-10-07 04:42:13,211 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-10-07 04:42:13,212 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-10-07 04:42:13,250 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-10-07 04:42:13,251 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-10-07 04:42:13,277 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads
2019-10-07 04:42:13,277 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139711460104000)>, <ExcThread(queue_monitoring, started 139711033100032)>, <ExcThread(queue_monitor, started 139710454298368)>, <ExcThread(copytool_out, started 139711273293568)>, <ExcThread(failed_post, started 139710429120256)>, <ExcThread(job_monitor, started 139711007921920)>]
2019-10-07 04:42:13,333 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-10-07 04:42:13,334 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-10-07 04:42:13,334 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-10-07 04:42:13,378 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
2019-10-07 04:42:13,378 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139711460104000)>, <ExcThread(queue_monitoring, started 139711033100032)>, <ExcThread(failed_post, started 139710429120256)>, <ExcThread(job_monitor, started 139711007921920)>]
2019-10-07 04:42:13,768 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-10-07 04:42:13,781 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-10-07 04:42:13,782 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139711460104000)>, <ExcThread(queue_monitoring, started 139711033100032)>, <ExcThread(job_monitor, started 139711007921920)>]
2019-10-07 04:42:15,349 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-10-07 04:42:15,394 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-10-07 04:42:15,394 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139711460104000)>, <ExcThread(job_monitor, started 139711007921920)>]
2019-10-07 04:42:57,829 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
2019-10-07 04:42:57,830 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-10-07 04:42:57,890 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-10-07 04:42:57,890 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-10-07 04:42:57,890 | INFO | MainThread | root | wrap_up | pilot has finished
2019-10-07 04:42:58 UTC [wrapper] ==== pilot stdout END ====
2019-10-07 04:42:58 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-10-07 04:42:58 UTC [wrapper] Pilot exit status: 0
2019-10-07 04:42:58 UTC [wrapper] STATUSCODE: 0
2019-10-07 04:42:58 UTC [wrapper] apfmon messages muted
---- find pandaIDs.out ----
total 56
-rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE
-rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN
-rw-------. 1 grid grid 11 Oct 6 23:23 pandaIDs.out
drwx------. 14 grid grid 216 Oct 6 23:23 pilot
-rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py
-rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION
-rw-------. 1 grid grid 2251 Jul 25 16:38 README.md
-rw-------. 1 grid grid 760 Aug 22 11:01 setup.py
-rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md
2019-10-07 04:42:58 UTC [wrapper] pandaIDs.out files:
-rw-------. 1 grid grid 11 Oct 6 23:23 /home/grid/slots/0/pilot2/pandaIDs.out
2019-10-07 04:42:58 UTC [wrapper] pandaIDs.out content:
4495384869
2019-10-07 04:42:58 UTC [wrapper] Test setup, not cleaning
2019-10-07 04:42:58 UTC [wrapper] ==== wrapper stdout END ====
2019-10-07 04:42:58 UTC [wrapper] ==== wrapper stderr END ====
2019-10-07 04:42:58 UTC [wrapper] wrapper wrapperexiting ec=0, duration=26393
2019-10-07 04:42:58 UTC [wrapper] apfmon messages muted
2019-10-07 06:43:02,254: ***************diag file************
2019-10-07 06:43:02,254: runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=26392.33s
KernelTime=762.20s
UserTime=100701.52s
CPUUsage=384%
MaxResidentMemory=1947144kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=25917
MinorPageFaults=23870861
Swaps=0
ForcedSwitches=12610187
WaitSwitches=12820076
Inputs=8693864
Outputs=1052168
SocketReceived=0
SocketSent=0
Signals=0
nodename=David_Cameron@dcameron04.cern.ch
exitcode=0
2019-10-07 06:43:02,261: ******************************WorkDir***********************
2019-10-07 06:43:02,262: total 270144
drwxrwx--x. 7 grid grid 4096 Oct 7 06:43 .
drwxr-x--x. 6 grid grid 42 Sep 26 14:51 ..
-rw-------. 1 grid grid 7586632 Oct 6 23:23 agis_ddmendpoints.json
-rw-------. 1 grid grid 3958872 Oct 6 23:23 agis_schedconf.cvmfs.json
drwx------. 2 grid grid 6 Oct 6 23:23 .alrb
drwxr-xr-x. 3 grid grid 17 Oct 6 23:23 APPS
-rw-------. 1 grid grid 538 Oct 6 23:23 .asetup
-rw-------. 1 grid grid 4503 Oct 6 23:24 .asetup.save
drwx------. 2 grid grid 6 Oct 6 23:24 .asetup-sysbin_1084
-rw-rw-r--. 1 grid grid 0 Oct 6 23:22 boinc_lockfile
-rw-rw-r--. 1 grid grid 8192 Oct 7 06:42 boinc_mmap_file
-rw-rw-r--. 1 grid grid 538 Oct 7 06:32 boinc_task_state.xml
-rw-rw-r--. 1 grid grid 262053143 Oct 6 23:23 EVNT.18605764._000086.pool.root.1
-rw-------. 1 grid grid 84501 Oct 7 06:42 heartbeat.json
-rw-rw-r--. 1 grid grid 5865 Oct 6 23:22 init_data.xml
-rw-rw-r--. 1 grid grid 267502 Oct 6 23:23 input.tar.gz
-rw-rw-r--. 1 grid grid 112 Oct 6 23:22 job.xml
-rw-------. 1 grid grid 1289999 Oct 7 06:42 log.19056279._004551.job.log.1
-rw-------. 1 grid grid 924507 Oct 7 06:42 log.19056279._004551.job.log.tgz.1
-rw-------. 1 grid grid 797 Oct 7 06:41 memory_monitor_summary.json
-rw-------. 1 grid grid 463 Oct 7 06:42 output.list
-rw-------. 1 grid grid 2840 Oct 2 15:44 pandaJobData.out
drwx------. 3 grid grid 229 Oct 6 23:23 pilot2
-rw-r--r--. 1 grid grid 259319 Oct 2 15:27 pilot2.tar.gz
-rw-------. 1 grid grid 10710 Oct 7 06:42 pilotlog.txt
-rw-r--r--. 1 grid grid 4480 Oct 2 15:42 queuedata.json
-rw-rw-r--. 1 grid grid 815 Oct 6 23:23 RTE.tar.gz
-rwxr-xr-x. 1 grid grid 7950 Oct 6 23:22 run_atlas
-rwx------. 1 grid grid 12762 Oct 2 15:44 runpilot2-wrapper.sh
-rw-rw-r--. 1 grid grid 692 Oct 7 06:42 runtime_log
-rw-rw-r--. 1 grid grid 6899 Oct 7 06:42 runtime_log.err
drwxrwx--x. 2 grid grid 131 Oct 7 06:43 shared
-rw-rw-r--. 1 grid grid 8688 Oct 6 23:23 start_atlas.sh
-rw-rw-r--. 1 grid grid 41509 Oct 7 06:43 stderr.txt
-rw-rw-r--. 1 grid grid 107 Oct 6 23:22 wrapper_26015_x86_64-pc-linux-gnu
-rw-rw-r--. 1 grid grid 29 Oct 7 06:42 wrapper_checkpoint.txt
-rw-------. 1 grid grid 519 Oct 7 06:42 ZHsMDm26tZvnShfckohDCDFpABFKDmABFKDm3aUUDmABFKDm4ZG1Jn.diag
2019-10-07 06:43:02,262: running start_atlas return value is 0
2019-10-07 06:43:02,262: Parent exit 0
2019-10-07 06:43:02,264: child process exit 0
06:43:02 (26067): run_atlas exited; CPU time 100714.846715
06:43:02 (26067): called boinc_finish(0)
</stderr_txt>
]]>
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