| Name | xXvNDmkzSZvnShfckohDCDFpABFKDmABFKDmAxoTDmABFKDmzY9yMm_1 |
| Workunit | 1942790 |
| Created | 4 Oct 2019, 5:47:57 UTC |
| Sent | 6 Oct 2019, 21:26:00 UTC |
| Report deadline | 13 Oct 2019, 21:26:00 UTC |
| Received | 7 Oct 2019, 18:32:13 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3911 |
| Run time | 6 hours 23 min 24 sec |
| CPU time | 1 days 0 hours 17 min 8 sec |
| Validate state | Valid |
| Credit | 619.67 |
| Device peak FLOPS | 11.64 GFLOPS |
| Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.82 GB |
| Peak swap size | 2.58 GB |
| Peak disk usage | 779.88 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:08:26 (24136): wrapper (7.7.26015): starting
13:08:26 (24136): wrapper: running run_atlas (--nthreads 4)
2019-10-07 13:08:26,946: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
2019-10-07 13:08:26,946: sys.argv = ['run_atlas', '--nthreads', '4']
2019-10-07 13:08:26,947: THREADS=4
2019-10-07 13:08:26,950: Checking for CVMFS
2019-10-07 13:08:29,707: CVMFS is installed
2019-10-07 13:08:29,708: Checking Singularity...
2019-10-07 13:08:29,990: Singularity is installed, version singularity version 3.2.1-1
2019-10-07 13:08:29,990: Testing the function of Singularity...
2019-10-07 13:08:29,990: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
2019-10-07 13:08:39,551: Singularity Works...
2019-10-07 13:08:39,551: copy /home/grid/slots/0/shared/ATLAS.root_0
2019-10-07 13:08:39,988: copy /home/grid/slots/0/shared/input.tar.gz
2019-10-07 13:08:39,989: copy /home/grid/slots/0/shared/RTE.tar.gz
2019-10-07 13:08:39,990: copy /home/grid/slots/0/shared/start_atlas.sh
2019-10-07 13:08:39,990: export ATHENA_PROC_NUMBER=4;
2019-10-07 13:08:40,023: start atlas job with PandaID=4495188295
2019-10-07 13:08:40,023: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err
2019-10-07 19:31:48,269: running cmd return value is 0
2019-10-07 19:31:48,276: Moving ./HITS.19000468._021758.pool.root.1 to shared/HITS.pool.root.1
2019-10-07 19:31:48,276: HITS result file:
2019-10-07 19:31:48,303: -rw-------. 1 grid grid 250055009 Oct 7 19:30 shared/HITS.pool.root.1
2019-10-07 19:31:48,304: *****************The last 200 lines of the pilot log******************
2019-10-07 19:31:48,311: "wallTime": 159
},
"validation": {
"cpuTime": 0,
"wallTime": 0
},
"wallTime": 155
}
},
"machine": {
"cpu_family": "6",
"linux_distribution": [
"CentOS Linux",
"7.6.1810",
"Core"
],
"model": "61",
"model_name": "Intel Core Processor (Broadwell, IBRS)",
"node": "dcameron04.cern.ch",
"platform": "Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
},
"transform": {
"cpuEfficiency": 0.9536,
"cpuPWEfficiency": 0.9567,
"cpuTime": 9,
"cpuTimeTotal": 87547,
"externalCpuTime": 182,
"processedEvents": 200,
"trfPredata": null,
"wallTime": 22883
}
}
}
2019-10-07 17:31:32,275 | DEBUG | queue_monitor | pilot.util.auxiliary.4495188295 | update_server | xml:will send fileinfo
2019-10-07 17:31:32,276 | INFO | queue_monitor | pilot.control.job.4495188295 | send_state | pilot will not update the server (heartbeat message will be written to file)
2019-10-07 17:31:32,276 | INFO | queue_monitor | pilot.control.job.4495188295 | send_state | job 4495188295 has finished - writing final server update
2019-10-07 17:31:32,280 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570446575.0, 1570446636.0, 1570446697.0, 1570446758.0, 1570446819.0, 1570446880.0, 1570446941.0, 1570447002.0, 1570447063.0, 1570447124.0, 1570447185.0, 1570447246.0, 1570447307.0, 1570447368.0, 1570447429.0, 1570447490.0, 1570447551.0, 1570447612.0, 1570447673.0, 1570447734.0, 1570447795.0, 1570447856.0, 1570447917.0, 1570447978.0, 1570448039.0, 1570448100.0, 1570448161.0, 1570448222.0, 1570448283.0, 1570448344.0, 1570448405.0, 1570448466.0, 1570448527.0, 1570448588.0, 1570448649.0, 1570448710.0, 1570448771.0, 1570448832.0, 1570448893.0, 1570448954.0, 1570449015.0, 1570449076.0, 1570449137.0, 1570449198.0, 1570449259.0, 1570449320.0, 1570449381.0, 1570449442.0, 1570449503.0, 1570449564.0, 1570449625.0, 1570449686.0, 1570449747.0, 1570449808.0, 1570449869.0, 1570449930.0, 1570449991.0, 1570450052.0, 1570450113.0, 1570450174.0, 1570450235.0, 1570450296.0, 1570450357.0, 1570450418.0, 1570450479.0, 1570450540.0, 1570450601.0, 1570450662.0, 1570450723.0, 1570450784.0, 1570450845.0, 1570450906.0, 1570450967.0, 1570451028.0, 1570451089.0, 1570451150.0, 1570451211.0, 1570451272.0, 1570451333.0, 1570451394.0, 1570451455.0, 1570451516.0, 1570451577.0, 1570451638.0, 1570451699.0, 1570451760.0, 1570451821.0, 1570451882.0, 1570451943.0, 1570452004.0, 1570452065.0, 1570452126.0, 1570452187.0, 1570452248.0, 1570452309.0, 1570452370.0, 1570452431.0, 1570452492.0, 1570452553.0, 1570452614.0, 1570452675.0, 1570452736.0, 1570452797.0, 1570452858.0, 1570452919.0, 1570452980.0, 1570453041.0, 1570453102.0, 1570453163.0, 1570453224.0, 1570453285.0, 1570453346.0, 1570453407.0, 1570453468.0, 1570453529.0, 1570453590.0, 1570453651.0, 1570453712.0, 1570453773.0, 1570453834.0, 1570453895.0, 1570453956.0, 1570454017.0, 1570454078.0, 1570454139.0, 1570454200.0, 1570454261.0, 1570454322.0, 1570454383.0, 1570454444.0, 1570454505.0, 1570454566.0, 1570454627.0, 1570454688.0, 1570454749.0, 1570454810.0, 1570454871.0, 1570454932.0, 1570454993.0, 1570455054.0, 1570455115.0, 1570455176.0, 1570455237.0, 1570455298.0, 1570455359.0, 1570455420.0, 1570455481.0, 1570455542.0, 1570455603.0, 1570455664.0, 1570455725.0, 1570455786.0, 1570455847.0, 1570455908.0, 1570455969.0, 1570456030.0, 1570456091.0, 1570456152.0, 1570456213.0, 1570456274.0, 1570456335.0, 1570456396.0, 1570456457.0, 1570456518.0, 1570456579.0, 1570456640.0, 1570456701.0, 1570456762.0, 1570456823.0, 1570456884.0, 1570456945.0, 1570457006.0, 1570457067.0, 1570457128.0, 1570457189.0, 1570457250.0, 1570457311.0, 1570457372.0, 1570457433.0, 1570457494.0, 1570457555.0, 1570457616.0, 1570457677.0, 1570457738.0, 1570457799.0, 1570457860.0, 1570457921.0, 1570457982.0, 1570458043.0, 1570458104.0, 1570458165.0, 1570458226.0, 1570458287.0, 1570458348.0, 1570458409.0, 1570458470.0, 1570458531.0, 1570458592.0, 1570458653.0, 1570458714.0, 1570458775.0, 1570458836.0, 1570458897.0, 1570458958.0, 1570459019.0, 1570459080.0, 1570459141.0, 1570459202.0, 1570459263.0, 1570459324.0, 1570459385.0, 1570459446.0, 1570459507.0, 1570459568.0, 1570459629.0, 1570459690.0, 1570459751.0, 1570459812.0, 1570459873.0, 1570459934.0, 1570459995.0, 1570460056.0, 1570460117.0, 1570460178.0, 1570460239.0, 1570460300.0, 1570460361.0, 1570460422.0, 1570460483.0, 1570460544.0, 1570460605.0, 1570460666.0, 1570460727.0, 1570460788.0, 1570460849.0, 1570460910.0, 1570460971.0, 1570461032.0, 1570461093.0, 1570461154.0, 1570461215.0, 1570461276.0, 1570461337.0, 1570461398.0, 1570461459.0, 1570461520.0, 1570461581.0, 1570461642.0, 1570461703.0, 1570461764.0, 1570461825.0, 1570461886.0, 1570461947.0, 1570462008.0, 1570462069.0, 1570462130.0, 1570462191.0, 1570462252.0, 1570462313.0, 1570462374.0, 1570462435.0, 1570462496.0, 1570462557.0, 1570462618.0, 1570462679.0, 1570462740.0, 1570462801.0, 1570462862.0, 1570462923.0, 1570462984.0, 1570463045.0, 1570463106.0, 1570463167.0, 1570463228.0, 1570463289.0, 1570463350.0, 1570463411.0, 1570463472.0, 1570463533.0, 1570463594.0, 1570463655.0, 1570463716.0, 1570463777.0, 1570463838.0, 1570463899.0, 1570463960.0, 1570464021.0, 1570464082.0, 1570464143.0, 1570464204.0, 1570464265.0, 1570464326.0, 1570464387.0, 1570464448.0, 1570464509.0, 1570464570.0, 1570464631.0, 1570464692.0, 1570464753.0, 1570464814.0, 1570464875.0, 1570464936.0, 1570464997.0, 1570465058.0, 1570465119.0, 1570465180.0, 1570465241.0, 1570465302.0, 1570465363.0, 1570465424.0, 1570465485.0, 1570465546.0, 1570465607.0, 1570465668.0, 1570465729.0, 1570465790.0, 1570465851.0, 1570465912.0, 1570465973.0, 1570466034.0, 1570466095.0, 1570466156.0, 1570466217.0, 1570466278.0, 1570466339.0, 1570466400.0, 1570466461.0, 1570466522.0, 1570466583.0, 1570466644.0, 1570466705.0, 1570466766.0, 1570466827.0, 1570466888.0, 1570466949.0, 1570467010.0, 1570467071.0, 1570467132.0, 1570467193.0, 1570467254.0, 1570467315.0, 1570467376.0, 1570467437.0, 1570467498.0, 1570467559.0, 1570467620.0, 1570467681.0, 1570467742.0, 1570467803.0, 1570467864.0, 1570467925.0, 1570467986.0, 1570468047.0, 1570468108.0, 1570468169.0, 1570468230.0, 1570468291.0, 1570468352.0, 1570468413.0, 1570468474.0, 1570468535.0, 1570468596.0, 1570468657.0, 1570468718.0, 1570468779.0, 1570468840.0, 1570468901.0, 1570468962.0, 1570469023.0, 1570469084.0, 1570469145.0, 1570469206.0, 1570469267.0, 1570469328.0, 1570469389.0, 1570469450.0], y=[] (must be same and length>=2)
2019-10-07 17:31:32,280 | DEBUG | queue_monitor | pilot.util.auxiliary.4495188295 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=200 workDirSize=4869392"
2019-10-07 17:31:32,280 | INFO | queue_monitor | pilot.control.job.4495188295 | get_data_structure | total number of processed events: 200 (read)
2019-10-07 17:31:32,281 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4495188295/memory_monitor_summary.json (trf name=prmon)
2019-10-07 17:31:32,282 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1684854, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 789273788, 'wtime': 22888, 'rss': 9495716, 'write_bytes': 517677056, 'vmem': 14180488, 'read_bytes': 4280188928, 'stime': 232, 'tx_bytes': 46726140, 'pss': 2698057, 'wchar': 516188717, 'rchar': 3343891311, 'tx_packets': 351596, 'swap': 0, 'utime': 88124}, 'Avg': {'write_bytes': 22617, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 34483, 'rx_packets': 73, 'vmem': 13704976, 'read_bytes': 187000, 'swap': 0, 'tx_bytes': 2041, 'pss': 2577764, 'wchar': 22552, 'rchar': 146093, 'tx_packets': 15, 'rss': 9106144}}
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | ..............................
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . Timing measurements:
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . get job = 0 s
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . initial setup = 1 s
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . payload setup = 0 s
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . total setup = 1 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . stage-in = 0 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . payload execution = 22929 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . stage-out = 3 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | ..............................
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-07 17:31:32,283 | DEBUG | queue_monitor | pilot.util.auxiliary.4495188295 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4495188295/pandatracerlog.txt (ignoring)
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4495188295/pilotlog.txt
2019-10-07 17:31:32,304 | WARNING | queue_monitor | pilot.util.auxiliary.4495188295 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-10-07 17:31:32,280 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570446575.0, 1570446636.0, 1570446697.0, 1570446758.0, 1570446819.0, 1570446880.0, 1570446941.0, 1570447002.0, 1570447063.0, 1570447124.0, 1570447185.0, 1570447246.0, 1570447307.0, 1570447368.0, 1570447429.0, 1570447490.0, 1570447551.0, 1570447612.0, 1570447673.0, 1570447734.0, 1570447795.0, 1570447856.0, 1570447917.0, 1570447978.0, 1570448039.0, 1570448100.0, 1570448161.0, 1570448222.0, 1570448283.0, 1570448344.0, 1570448405.0, 1570448466.0, 1570448527.0, 1570448588.0, 1570448649.0, 1570448710.0, 1570448771.0, 1570448832.0, 1570448893.0, 1570448954.0, 1570449015.0, 1570449076.0, 1570449137.0, 1570449198.0, 1570449259.0, 1570449320.0, 1570449381.0, 1570449442.0, 1570449503.0, 1570449564.0, 1570449625.0, 1570449686.0, 1570449747.0, 1570449808.0, 1570449869.0, 1570449930.0, 1570449991.0, 1570450052.0, 1570450113.0, 1570450174.0, 1570450235.0, 1570450296.0, 1570450357.0, 1570450418.0, 1570450479.0, 1570450540.0, 1570450601.0, 1570450662.0, 1570450723.0, 1570450784.0, 1570450845.0, 1570450906.0, 1570450967.0, 1570451028.0, 1570451089.0, 1570451150.0, 1570451211.0, 1570451272.0, 1570451333.0, 1570451394.0, 1570451455.0, 1570451516.0, 1570451577.0, 1570451638.0, 1570451699.0, 1570451760.0, 1570451821.0, 1570451882.0, 1570451943.0, 1570452004.0, 1570452065.0, 1570452126.0, 1570452187.0, 1570452248.0, 1570452309.0, 1570452370.0, 1570452431.0, 1570452492.0, 1570452553.0, 1570452614.0, 1570452675.0, 1570452736.0, 1570452797.0, 1570452858.0, 1570452919.0, 1570452980.0, 1570453041.0, 1570453102.0, 1570453163.0, 1570453224.0, 1570453285.0, 1570453346.0, 1570453407.0, 1570453468.0, 1570453529.0, 1570453590.0, 1570453651.0, 1570453712.0, 1570453773.0, 1570453834.0, 1570453895.0, 1570453956.0, 1570454017.0, 1570454078.0, 1570454139.0, 1570454200.0, 1570454261.0, 1570454322.0, 1570454383.0, 1570454444.0, 1570454505.0, 1570454566.0, 1570454627.0, 1570454688.0, 1570454749.0, 1570454810.0, 1570454871.0, 1570454932.0, 1570454993.0, 1570455054.0, 1570455115.0, 1570455176.0, 1570455237.0, 1570455298.0, 1570455359.0, 1570455420.0, 1570455481.0, 1570455542.0, 1570455603.0, 1570455664.0, 1570455725.0, 1570455786.0, 1570455847.0, 1570455908.0, 1570455969.0, 1570456030.0, 1570456091.0, 1570456152.0, 1570456213.0, 1570456274.0, 1570456335.0, 1570456396.0, 1570456457.0, 1570456518.0, 1570456579.0, 1570456640.0, 1570456701.0, 1570456762.0, 1570456823.0, 1570456884.0, 1570456945.0, 1570457006.0, 1570457067.0, 1570457128.0, 1570457189.0, 1570457250.0, 1570457311.0, 1570457372.0, 1570457433.0, 1570457494.0, 1570457555.0, 1570457616.0, 1570457677.0, 1570457738.0, 1570457799.0, 1570457860.0, 1570457921.0, 1570457982.0, 1570458043.0, 1570458104.0, 1570458165.0, 1570458226.0, 1570458287.0, 1570458348.0, 1570458409.0, 1570458470.0, 1570458531.0, 1570458592.0, 1570458653.0, 1570458714.0, 1570458775.0, 1570458836.0, 1570458897.0, 1570458958.0, 1570459019.0, 1570459080.0, 1570459141.0, 1570459202.0, 1570459263.0, 1570459324.0, 1570459385.0, 1570459446.0, 1570459507.0, 1570459568.0, 1570459629.0, 1570459690.0, 1570459751.0, 1570459812.0, 1570459873.0, 1570459934.0, 1570459995.0, 1570460056.0, 1570460117.0, 1570460178.0, 1570460239.0, 1570460300.0, 1570460361.0, 1570460422.0, 1570460483.0, 1570460544.0, 1570460605.0, 1570460666.0, 1570460727.0, 1570460788.0, 1570460849.0, 1570460910.0, 1570460971.0, 1570461032.0, 1570461093.0, 1570461154.0, 1570461215.0, 1570461276.0, 1570461337.0, 1570461398.0, 1570461459.0, 1570461520.0, 1570461581.0, 1570461642.0, 1570461703.0, 1570461764.0, 1570461825.0, 1570461886.0, 1570461947.0, 1570462008.0, 1570462069.0, 1570462130.0, 1570462191.0, 1570462252.0, 1570462313.0, 1570462374.0, 1570462435.0, 1570462496.0, 1570462557.0, 1570462618.0, 1570462679.0, 1570462740.0, 1570462801.0, 1570462862.0, 1570462923.0, 1570462984.0, 1570463045.0, 1570463106.0, 1570463167.0, 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1570467559.0, 1570467620.0, 1570467681.0, 1570467742.0, 1570467803.0, 1570467864.0, 1570467925.0, 1570467986.0, 1570468047.0, 1570468108.0, 1570468169.0, 1570468230.0, 1570468291.0, 1570468352.0, 1570468413.0, 1570468474.0, 1570468535.0, 1570468596.0, 1570468657.0, 1570468718.0, 1570468779.0, 1570468840.0, 1570468901.0, 1570468962.0, 1570469023.0, 1570469084.0, 1570469145.0, 1570469206.0, 1570469267.0, 1570469328.0, 1570469389.0, 1570469450.0], y=[] (must be same and length>=2)
2019-10-07 17:31:32,280 | DEBUG | queue_monitor | pilot.util.auxiliary.4495188295 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=200 workDirSize=4869392"
2019-10-07 17:31:32,280 | INFO | queue_monitor | pilot.control.job.4495188295 | get_data_structure | total number of processed events: 200 (read)
2019-10-07 17:31:32,281 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4495188295/memory_monitor_summary.json (trf name=prmon)
2019-10-07 17:31:32,282 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1684854, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 789273788, 'wtime': 22888, 'rss': 9495716, 'write_bytes': 517677056, 'vmem': 14180488, 'read_bytes': 4280188928, 'stime': 232, 'tx_bytes': 46726140, 'pss': 2698057, 'wchar': 516188717, 'rchar': 3343891311, 'tx_packets': 351596, 'swap': 0, 'utime': 88124}, 'Avg': {'write_bytes': 22617, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 34483, 'rx_packets': 73, 'vmem': 13704976, 'read_bytes': 187000, 'swap': 0, 'tx_bytes': 2041, 'pss': 2577764, 'wchar': 22552, 'rchar': 146093, 'tx_packets': 15, 'rss': 9106144}}
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | ..............................
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . Timing measurements:
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . get job = 0 s
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . initial setup = 1 s
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . payload setup = 0 s
2019-10-07 17:31:32,282 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . total setup = 1 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . stage-in = 0 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . payload execution = 22929 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | . stage-out = 3 s
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | timing_report | ..............................
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.auxiliary.4495188295 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-07 17:31:32,283 | DEBUG | queue_monitor | pilot.util.auxiliary.4495188295 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4495188295/pandatracerlog.txt (ignoring)
2019-10-07 17:31:32,283 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4495188295/pilotlog.txt
2019-10-07 17:31:32,305 | DEBUG | queue_monitor | pilot.control.job.4495188295 | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json
2019-10-07 17:31:32,306 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4495188295 was dequeued from the monitored payloads queue
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report |
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | job summary report
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | --------------------------------------------------
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | PanDA job id: 4495188295
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | task id: 19000468
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | errors: (none)
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | status: LOG_TRANSFER = DONE
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | pilot state: finished
2019-10-07 17:31:32,820 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | transexitcode: 0
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | exeerrorcode: 0
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | exeerrordiag:
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | exitcode: 0
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | exitmsg: OK
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | cpuconsumptiontime: 87823 s
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | nevents: 200
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | neventsw: 0
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | pid: 31560
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | pgrp: 31560
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | corecount: 4
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | event service: False
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report | --------------------------------------------------
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.auxiliary.4495188295 | make_job_report |
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.control.job.4495188295 | has_job_completed | job 4495188295 has completed
2019-10-07 17:31:32,821 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-10-07 17:31:32,832 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4495188295
2019-10-07 17:31:33,836 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [31560]
2019-10-07 17:31:33,837 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 31560
2019-10-07 17:31:33,837 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-10-07 17:31:34,841 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-10-07 17:31:34,842 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=31560
2019-10-07 17:31:34,932 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [31560] (in reverse order)
2019-10-07 17:31:34,984 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-10-07 17:31:34,985 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-10-07 17:31:34,985 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-10-07 17:31:34,985 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-10-07 17:31:34,991 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 17:31:34,991 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) ***
2019-10-07 17:31:34,991 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 17:31:34,991 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
2019-10-07 17:31:34,991 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
2019-10-07 17:31:34,991 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
2019-10-07 17:31:35,075 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.6.1810 (Core)
Release: 7.6.1810
Codename: Core
2019-10-07 17:31:35,076 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-07 17:31:35,579 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0
2019-10-07 17:31:35,601 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (19563282432 B)
2019-10-07 17:31:35,601 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-10-07 17:31:35,601 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-10-07 17:31:35,605 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-10-07 17:31:35,705 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-10-07 17:31:35,705 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-10-07 17:31:35,710 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads
2019-10-07 17:31:35,711 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>, <ExcThread(validate_post, started 140062348003072)>, <ExcThread(validate, started 140063129118464)>, <ExcThread(copytool_out, started 140062893266688)>, <ExcThread(payload, started 140062901659392)>, <ExcThread(create_data_payload, started 140062910052096)>, <ExcThread(validate_pre, started 140062373181184)>, <ExcThread(queue_monitoring, started 140062868088576)>, <ExcThread(queue_monitor, started 140062364788480)>, <ExcThread(failed_post, started 140062339610368)>, <ExcThread(monitor, started 140062859695872)>, <ExcThread(copytool_in, started 140062356395776)>, <ExcThread(data, started 140063120725760)>, <ExcThread(execute_payloads, started 140062331217664)>]
2019-10-07 17:31:35,909 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-10-07 17:31:35,909 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-10-07 17:31:35,981 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-10-07 17:31:36,012 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads
2019-10-07 17:31:36,013 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>, <ExcThread(validate_post, started 140062348003072)>, <ExcThread(validate, started 140063129118464)>, <ExcThread(copytool_out, started 140062893266688)>, <ExcThread(create_data_payload, started 140062910052096)>, <ExcThread(validate_pre, started 140062373181184)>, <ExcThread(queue_monitoring, started 140062868088576)>, <ExcThread(queue_monitor, started 140062364788480)>, <ExcThread(failed_post, started 140062339610368)>, <ExcThread(copytool_in, started 140062356395776)>, <ExcThread(data, started 140063120725760)>, <ExcThread(execute_payloads, started 140062331217664)>]
2019-10-07 17:31:36,084 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-10-07 17:31:36,143 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-10-07 17:31:36,148 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-10-07 17:31:36,214 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads
2019-10-07 17:31:36,215 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>, <ExcThread(validate_post, started 140062348003072)>, <ExcThread(copytool_out, started 140062893266688)>, <ExcThread(create_data_payload, started 140062910052096)>, <ExcThread(validate_pre, started 140062373181184)>, <ExcThread(queue_monitoring, started 140062868088576)>, <ExcThread(queue_monitor, started 140062364788480)>, <ExcThread(copytool_in, started 140062356395776)>, <ExcThread(data, started 140063120725760)>, <ExcThread(execute_payloads, started 140062331217664)>]
2019-10-07 17:31:36,480 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-10-07 17:31:36,606 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-10-07 17:31:36,612 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-10-07 17:31:36,612 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-10-07 17:31:36,617 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads
2019-10-07 17:31:36,617 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>, <ExcThread(validate_post, started 140062348003072)>, <ExcThread(create_data_payload, started 140062910052096)>, <ExcThread(queue_monitoring, started 140062868088576)>, <ExcThread(queue_monitor, started 140062364788480)>, <ExcThread(copytool_in, started 140062356395776)>, <ExcThread(execute_payloads, started 140062331217664)>]
2019-10-07 17:31:36,812 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-10-07 17:31:36,812 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-10-07 17:31:36,819 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads
2019-10-07 17:31:36,819 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>, <ExcThread(validate_post, started 140062348003072)>, <ExcThread(create_data_payload, started 140062910052096)>, <ExcThread(queue_monitoring, started 140062868088576)>, <ExcThread(copytool_in, started 140062356395776)>, <ExcThread(execute_payloads, started 140062331217664)>]
2019-10-07 17:31:36,981 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-10-07 17:31:36,983 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-10-07 17:31:36,984 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-10-07 17:31:37,021 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
2019-10-07 17:31:37,021 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>, <ExcThread(validate_post, started 140062348003072)>, <ExcThread(queue_monitoring, started 140062868088576)>]
2019-10-07 17:31:37,082 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-10-07 17:31:37,122 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-10-07 17:31:37,122 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>, <ExcThread(queue_monitoring, started 140062868088576)>]
2019-10-07 17:31:39,149 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-10-07 17:31:39,236 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-10-07 17:31:39,237 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140063299143488)>, <ExcThread(job_monitor, started 140062876481280)>]
2019-10-07 17:31:44,667 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
2019-10-07 17:31:44,667 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-10-07 17:31:44,673 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-10-07 17:31:44,674 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-10-07 17:31:44,674 | INFO | MainThread | root | wrap_up | pilot has finished
2019-10-07 17:31:44 UTC [wrapper] ==== pilot stdout END ====
2019-10-07 17:31:44 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-10-07 17:31:44 UTC [wrapper] Pilot exit status: 0
2019-10-07 17:31:44 UTC [wrapper] STATUSCODE: 0
2019-10-07 17:31:44 UTC [wrapper] apfmon messages muted
---- find pandaIDs.out ----
total 56
-rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE
-rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN
-rw-------. 1 grid grid 11 Oct 7 13:08 pandaIDs.out
drwx------. 14 grid grid 216 Oct 7 13:08 pilot
-rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py
-rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION
-rw-------. 1 grid grid 2251 Jul 25 16:38 README.md
-rw-------. 1 grid grid 760 Aug 22 11:01 setup.py
-rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md
2019-10-07 17:31:44 UTC [wrapper] pandaIDs.out files:
-rw-------. 1 grid grid 11 Oct 7 13:08 /home/grid/slots/0/pilot2/pandaIDs.out
2019-10-07 17:31:44 UTC [wrapper] pandaIDs.out content:
4495188295
2019-10-07 17:31:44 UTC [wrapper] Test setup, not cleaning
2019-10-07 17:31:44 UTC [wrapper] ==== wrapper stdout END ====
2019-10-07 17:31:44 UTC [wrapper] ==== wrapper stderr END ====
2019-10-07 17:31:44 UTC [wrapper] wrapper wrapperexiting ec=0, duration=22979
2019-10-07 17:31:44 UTC [wrapper] apfmon messages muted
2019-10-07 19:31:48,315: ***************diag file************
2019-10-07 19:31:48,315: runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=22979.01s
KernelTime=680.30s
UserTime=87415.68s
CPUUsage=383%
MaxResidentMemory=1947164kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=25814
MinorPageFaults=21814092
Swaps=0
ForcedSwitches=10842466
WaitSwitches=11341381
Inputs=8488696
Outputs=1059024
SocketReceived=0
SocketSent=0
Signals=0
nodename=David_Cameron@dcameron04.cern.ch
exitcode=0
2019-10-07 19:31:48,323: ******************************WorkDir***********************
2019-10-07 19:31:48,323: total 281328
drwxrwx--x. 7 grid grid 4096 Oct 7 19:31 .
drwxr-x--x. 6 grid grid 42 Sep 26 14:51 ..
-rw-------. 1 grid grid 7595159 Oct 7 13:08 agis_ddmendpoints.json
-rw-------. 1 grid grid 3957898 Oct 7 13:08 agis_schedconf.cvmfs.json
drwx------. 2 grid grid 6 Oct 7 13:08 .alrb
drwxr-xr-x. 3 grid grid 17 Oct 7 13:08 APPS
-rw-------. 1 grid grid 538 Oct 7 13:08 .asetup
-rw-------. 1 grid grid 4506 Oct 7 13:09 .asetup.save
drwx------. 2 grid grid 6 Oct 7 13:09 .asetup-sysbin_31561
-rw-rw-r--. 1 grid grid 0 Oct 7 13:08 boinc_lockfile
-rw-rw-r--. 1 grid grid 8192 Oct 7 19:31 boinc_mmap_file
-rw-rw-r--. 1 grid grid 537 Oct 7 19:19 boinc_task_state.xml
-rw-rw-r--. 1 grid grid 273683184 Oct 7 13:08 EVNT.18605543._000408.pool.root.1
-rw-------. 1 grid grid 74443 Oct 7 19:31 heartbeat.json
-rw-rw-r--. 1 grid grid 5865 Oct 7 13:08 init_data.xml
-rw-rw-r--. 1 grid grid 267499 Oct 7 13:08 input.tar.gz
-rw-rw-r--. 1 grid grid 112 Oct 7 13:08 job.xml
-rw-------. 1 grid grid 1132660 Oct 7 19:31 log.19000468._021758.job.log.1
-rw-------. 1 grid grid 903615 Oct 7 19:31 log.19000468._021758.job.log.tgz.1
-rw-------. 1 grid grid 847 Oct 7 19:31 memory_monitor_summary.json
-rw-------. 1 grid grid 463 Oct 7 19:31 output.list
-rw-------. 1 grid grid 2843 Oct 1 10:47 pandaJobData.out
drwx------. 3 grid grid 229 Oct 7 13:08 pilot2
-rw-r--r--. 1 grid grid 259319 Oct 1 10:47 pilot2.tar.gz
-rw-------. 1 grid grid 11801 Oct 7 19:31 pilotlog.txt
-rw-r--r--. 1 grid grid 4480 Oct 1 10:47 queuedata.json
-rw-rw-r--. 1 grid grid 815 Oct 7 13:08 RTE.tar.gz
-rwxr-xr-x. 1 grid grid 7950 Oct 7 13:08 run_atlas
-rwx------. 1 grid grid 12762 Oct 1 10:47 runpilot2-wrapper.sh
-rw-rw-r--. 1 grid grid 692 Oct 7 19:31 runtime_log
-rw-rw-r--. 1 grid grid 6899 Oct 7 19:31 runtime_log.err
drwxrwx--x. 2 grid grid 131 Oct 7 19:31 shared
-rw-rw-r--. 1 grid grid 8688 Oct 7 13:08 start_atlas.sh
-rw-rw-r--. 1 grid grid 41116 Oct 7 19:31 stderr.txt
-rw-rw-r--. 1 grid grid 107 Oct 7 13:08 wrapper_26015_x86_64-pc-linux-gnu
-rw-rw-r--. 1 grid grid 28 Oct 7 19:31 wrapper_checkpoint.txt
-rw-------. 1 grid grid 518 Oct 7 19:31 xXvNDmkzSZvnShfckohDCDFpABFKDmABFKDmAxoTDmABFKDmzY9yMm.diag
2019-10-07 19:31:48,323: running start_atlas return value is 0
2019-10-07 19:31:48,323: Parent exit 0
2019-10-07 19:31:48,326: child process exit 0
19:31:48 (24136): run_atlas exited; CPU time 87428.274958
19:31:48 (24136): called boinc_finish(0)
</stderr_txt>
]]>
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