| Name | qZmMDmxbFbvnShfckohDCDFpABFKDmABFKDmsKfWDmABFKDmsnHSVo_0 |
| Workunit | 1943415 |
| Created | 6 Oct 2019, 6:56:27 UTC |
| Sent | 7 Oct 2019, 14:36:19 UTC |
| Report deadline | 14 Oct 2019, 14:36:19 UTC |
| Received | 8 Oct 2019, 9:15:41 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3717 |
| Run time | 18 hours 29 min 2 sec |
| CPU time | 2 days 22 hours 54 min 43 sec |
| Validate state | Valid |
| Credit | 2,714.38 |
| Device peak FLOPS | 17.62 GFLOPS |
| Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.60 GB |
| Peak disk usage | 820.54 MB |
Stderr output
<core_client_version>7.12.0</core_client_version>
<![CDATA[
<stderr_txt>
16:39:33 (16338): wrapper (7.7.26015): starting
16:39:33 (16338): wrapper: running run_atlas (--nthreads 4)
2019-10-07 16:39:35,205: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
2019-10-07 16:39:35,270: sys.argv = ['run_atlas', '--nthreads', '4']
2019-10-07 16:39:35,274: THREADS=4
2019-10-07 16:39:35,276: Checking for CVMFS
2019-10-07 16:40:29,786: CVMFS is installed
2019-10-07 16:40:29,786: Checking Singularity...
2019-10-07 16:40:29,788: Singularity is not installed, using version from CVMFS
2019-10-07 16:40:29,789: Testing the function of Singularity...
2019-10-07 16:40:29,789: Checking singularity with cmd:/cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
2019-10-07 16:44:35,905: Singularity Works...
2019-10-07 16:44:35,906: copy /var/lib/boinc-client/slots/8/shared/start_atlas.sh
2019-10-07 16:44:35,906: copy /var/lib/boinc-client/slots/8/shared/input.tar.gz
2019-10-07 16:44:35,907: copy /var/lib/boinc-client/slots/8/shared/RTE.tar.gz
2019-10-07 16:44:35,907: copy /var/lib/boinc-client/slots/8/shared/ATLAS.root_0
2019-10-07 16:44:37,066: export ATHENA_PROC_NUMBER=4;
2019-10-07 16:44:37,302: start atlas job with PandaID=4497949211
2019-10-07 16:44:37,302: cmd = /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /var/lib/boinc-client/slots/8 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err
2019-10-08 11:09:52,376: running cmd return value is 0
2019-10-08 11:09:52,410: Moving ./HITS.19056259._011196.pool.root.1 to shared/HITS.pool.root.1
2019-10-08 11:09:52,410: HITS result file:
2019-10-08 11:09:52,452: -rw------- 1 boinc boinc 244293894 okt 8 11:07 shared/HITS.pool.root.1
2019-10-08 11:09:52,457: *****************The last 200 lines of the pilot log******************
2019-10-08 11:09:52,471: "cpuTime": 333,
"wallTime": 517
},
"validation": {
"cpuTime": 0,
"wallTime": 1
},
"wallTime": 507
}
},
"machine": {
"cpu_family": "6",
"linux_distribution": [
"CentOS Linux",
"7.6.1810",
"Core"
],
"model": "42",
"model_name": "Intel(R) Core(TM) i7-2600 CPU @ 3.40GHz",
"node": "LinAH125",
"platform": "Linux-4.18.0-15-generic-x86_64-with-centos-7.6.1810-Core"
},
"transform": {
"cpuEfficiency": 0.978,
"cpuPWEfficiency": 0.9822,
"cpuTime": 30,
"cpuTimeTotal": 255337,
"externalCpuTime": 977,
"processedEvents": 200,
"trfPredata": null,
"wallTime": 64940
}
}
}
2019-10-08 09:08:53,400 | DEBUG | queue_monitor | pilot.util.auxiliary.4497949211 | update_server | xml:will send fileinfo
2019-10-08 09:08:53,401 | INFO | queue_monitor | pilot.control.job.4497949211 | send_state | pilot will not update the server (heartbeat message will be written to file)
2019-10-08 09:08:53,401 | INFO | queue_monitor | pilot.control.job.4497949211 | send_state | job 4497949211 has finished - writing final server update
2019-10-08 09:08:53,402 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | get_job_metrics | will not add max space = -22804954 B to job metrics
2019-10-08 09:08:53,438 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570459783.0, 1570459844.0, 1570459905.0, 1570459966.0, 1570460027.0, 1570460088.0, 1570460149.0, 1570460210.0, 1570460271.0, 1570460332.0, 1570460393.0, 1570460454.0, 1570460515.0, 1570460576.0, 1570460637.0, 1570460698.0, 1570460759.0, 1570460820.0, 1570460881.0, 1570460942.0, 1570461003.0, 1570461064.0, 1570461125.0, 1570461186.0, 1570461247.0, 1570461308.0, 1570461369.0, 1570461430.0, 1570461491.0, 1570461552.0, 1570461613.0, 1570461674.0, 1570461735.0, 1570461796.0, 1570461857.0, 1570461918.0, 1570461979.0, 1570462040.0, 1570462101.0, 1570462162.0, 1570462223.0, 1570462284.0, 1570462345.0, 1570462406.0, 1570462467.0, 1570462528.0, 1570462589.0, 1570462650.0, 1570462711.0, 1570462772.0, 1570462833.0, 1570462894.0, 1570462955.0, 1570463016.0, 1570463077.0, 1570463138.0, 1570463199.0, 1570463260.0, 1570463321.0, 1570463382.0, 1570463443.0, 1570463504.0, 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1570524199.0, 1570524260.0, 1570524321.0, 1570524382.0, 1570524443.0, 1570524504.0, 1570524565.0, 1570524626.0, 1570524687.0, 1570524748.0, 1570524809.0, 1570524870.0, 1570524931.0, 1570524992.0, 1570525053.0, 1570525114.0, 1570525175.0, 1570525236.0, 1570525297.0, 1570525358.0, 1570525419.0, 1570525480.0, 1570525541.0, 1570525602.0, 1570525663.0], y=[] (must be same and length>=2)
2019-10-08 09:08:53,439 | DEBUG | queue_monitor | pilot.util.auxiliary.4497949211 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200"
2019-10-08 09:08:53,440 | INFO | queue_monitor | pilot.control.job.4497949211 | get_data_structure | total number of processed events: 200 (read)
2019-10-08 09:08:53,477 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/8/PanDA_Pilot-4497949211/memory_monitor_summary.json (trf name=prmon)
2019-10-08 09:08:53,480 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 420948, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 553483053, 'wtime': 64985, 'rss': 9955280, 'write_bytes': 516362240, 'vmem': 14181068, 'read_bytes': 3289419776, 'stime': 1072, 'tx_bytes': 135401816, 'pss': 2823977, 'wchar': 506581365, 'rchar': 11091470733, 'tx_packets': 138687, 'swap': 0, 'utime': 256540}, 'Avg': {'write_bytes': 7945, 'nprocs': 8, 'nthreads': 0, 'rx_bytes': 8517, 'rx_packets': 6, 'vmem': 13793323, 'read_bytes': 50617, 'swap': 0, 'tx_bytes': 2083, 'pss': 2692799, 'wchar': 7795, 'rchar': 170676, 'tx_packets': 2, 'rss': 9666306}}
2019-10-08 09:08:53,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-08 09:08:53,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-08 09:08:53,481 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | ..............................
2019-10-08 09:08:53,482 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . Timing measurements:
2019-10-08 09:08:53,482 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . get job = 1 s
2019-10-08 09:08:53,482 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . initial setup = 3 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . payload setup = 0 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . total setup = 3 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . stage-in = 2 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . payload execution = 65997 s
2019-10-08 09:08:53,484 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . stage-out = 18 s
2019-10-08 09:08:53,484 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | ..............................
2019-10-08 09:08:53,484 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-08 09:08:53,485 | DEBUG | queue_monitor | pilot.util.auxiliary.4497949211 | get_panda_tracer_log | PanDA tracer log does not exist: /var/lib/boinc-client/slots/8/PanDA_Pilot-4497949211/pandatracerlog.txt (ignoring)
2019-10-08 09:08:53,485 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /var/lib/boinc-client/slots/8/PanDA_Pilot-4497949211/pilotlog.txt
2019-10-08 09:08:53,530 | WARNING | queue_monitor | pilot.util.auxiliary.4497949211 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-10-08 09:08:53,438 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570459783.0, 1570459844.0, 1570459905.0, 1570459966.0, 1570460027.0, 1570460088.0, 1570460149.0, 1570460210.0, 1570460271.0, 1570460332.0, 1570460393.0, 1570460454.0, 1570460515.0, 1570460576.0, 1570460637.0, 1570460698.0, 1570460759.0, 1570460820.0, 1570460881.0, 1570460942.0, 1570461003.0, 1570461064.0, 1570461125.0, 1570461186.0, 1570461247.0, 1570461308.0, 1570461369.0, 1570461430.0, 1570461491.0, 1570461552.0, 1570461613.0, 1570461674.0, 1570461735.0, 1570461796.0, 1570461857.0, 1570461918.0, 1570461979.0, 1570462040.0, 1570462101.0, 1570462162.0, 1570462223.0, 1570462284.0, 1570462345.0, 1570462406.0, 1570462467.0, 1570462528.0, 1570462589.0, 1570462650.0, 1570462711.0, 1570462772.0, 1570462833.0, 1570462894.0, 1570462955.0, 1570463016.0, 1570463077.0, 1570463138.0, 1570463199.0, 1570463260.0, 1570463321.0, 1570463382.0, 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2019-10-08 09:08:53,439 | DEBUG | queue_monitor | pilot.util.auxiliary.4497949211 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200"
2019-10-08 09:08:53,440 | INFO | queue_monitor | pilot.control.job.4497949211 | get_data_structure | total number of processed events: 200 (read)
2019-10-08 09:08:53,477 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/8/PanDA_Pilot-4497949211/memory_monitor_summary.json (trf name=prmon)
2019-10-08 09:08:53,480 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 420948, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 553483053, 'wtime': 64985, 'rss': 9955280, 'write_bytes': 516362240, 'vmem': 14181068, 'read_bytes': 3289419776, 'stime': 1072, 'tx_bytes': 135401816, 'pss': 2823977, 'wchar': 506581365, 'rchar': 11091470733, 'tx_packets': 138687, 'swap': 0, 'utime': 256540}, 'Avg': {'write_bytes': 7945, 'nprocs': 8, 'nthreads': 0, 'rx_bytes': 8517, 'rx_packets': 6, 'vmem': 13793323, 'read_bytes': 50617, 'swap': 0, 'tx_bytes': 2083, 'pss': 2692799, 'wchar': 7795, 'rchar': 170676, 'tx_packets': 2, 'rss': 9666306}}
2019-10-08 09:08:53,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-08 09:08:53,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-08 09:08:53,481 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | ..............................
2019-10-08 09:08:53,482 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . Timing measurements:
2019-10-08 09:08:53,482 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . get job = 1 s
2019-10-08 09:08:53,482 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . initial setup = 3 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . payload setup = 0 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . total setup = 3 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . stage-in = 2 s
2019-10-08 09:08:53,483 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . payload execution = 65997 s
2019-10-08 09:08:53,484 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | . stage-out = 18 s
2019-10-08 09:08:53,484 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | timing_report | ..............................
2019-10-08 09:08:53,484 | INFO | queue_monitor | pilot.util.auxiliary.4497949211 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-08 09:08:53,485 | DEBUG | queue_monitor | pilot.util.auxiliary.4497949211 | get_panda_tracer_log | PanDA tracer log does not exist: /var/lib/boinc-client/slots/8/PanDA_Pilot-4497949211/pandatracerlog.txt (ignoring)
2019-10-08 09:08:53,485 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /var/lib/boinc-client/slots/8/PanDA_Pilot-4497949211/pilotlog.txt
2019-10-08 09:08:53,533 | DEBUG | queue_monitor | pilot.control.job.4497949211 | send_state | wrote heartbeat to file /var/lib/boinc-client/slots/8/heartbeat.json
2019-10-08 09:08:53,534 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4497949211 was dequeued from the monitored payloads queue
2019-10-08 09:08:58,030 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report |
2019-10-08 09:08:58,031 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | job summary report
2019-10-08 09:08:58,031 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | --------------------------------------------------
2019-10-08 09:08:58,031 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | PanDA job id: 4497949211
2019-10-08 09:08:58,032 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | task id: 19056259
2019-10-08 09:08:58,032 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | errors: (none)
2019-10-08 09:08:58,032 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | status: LOG_TRANSFER = DONE
2019-10-08 09:08:58,032 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | pilot state: finished
2019-10-08 09:08:58,033 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | transexitcode: 0
2019-10-08 09:08:58,033 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | exeerrorcode: 0
2019-10-08 09:08:58,033 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | exeerrordiag:
2019-10-08 09:08:58,033 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | exitcode: 0
2019-10-08 09:08:58,034 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | exitmsg: OK
2019-10-08 09:08:58,034 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | cpuconsumptiontime: 256435 s
2019-10-08 09:08:58,034 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | nevents: 200
2019-10-08 09:08:58,034 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | neventsw: 0
2019-10-08 09:08:58,035 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | pid: 23743
2019-10-08 09:08:58,035 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | pgrp: 23743
2019-10-08 09:08:58,035 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | corecount: 4
2019-10-08 09:08:58,036 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | event service: False
2019-10-08 09:08:58,036 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report | --------------------------------------------------
2019-10-08 09:08:58,036 | INFO | retrieve | pilot.util.auxiliary.4497949211 | make_job_report |
2019-10-08 09:08:58,036 | INFO | retrieve | pilot.control.job.4497949211 | has_job_completed | job 4497949211 has completed
2019-10-08 09:08:58,036 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-10-08 09:08:58,049 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/8/PanDA_Pilot-4497949211
2019-10-08 09:08:59,055 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [23743]
2019-10-08 09:08:59,055 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 23743
2019-10-08 09:08:59,055 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-10-08 09:09:00,060 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-10-08 09:09:00,061 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=23743
2019-10-08 09:09:00,350 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [23743] (in reverse order)
2019-10-08 09:09:00,449 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-10-08 09:09:00,449 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-10-08 09:09:00,450 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-10-08 09:09:00,450 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-10-08 09:09:00,589 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 09:09:00,589 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) ***
2019-10-08 09:09:00,590 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 09:09:00,590 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
2019-10-08 09:09:00,591 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
2019-10-08 09:09:00,591 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
2019-10-08 09:09:01,329 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.6.1810 (Core)
Release: 7.6.1810
Codename: Core
2019-10-08 09:09:01,330 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 09:09:01,833 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/8
2019-10-08 09:09:01,866 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (10982785024 B)
2019-10-08 09:09:01,867 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-10-08 09:09:01,868 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-10-08 09:09:01,893 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-10-08 09:09:01,897 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 16 threads
2019-10-08 09:09:01,898 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140385706690368)>, <ExcThread(job, started 140385545058048)>, <ExcThread(payload, started 140385158424320)>, <ExcThread(copytool_out, started 140385519879936)>, <ExcThread(execute_payloads, started 140385032599296)>, <ExcThread(data, started 140385528272640)>, <ExcThread(validate_pre, started 140385133246208)>, <ExcThread(validate, started 140385536665344)>, <ExcThread(job_monitor, started 140385015813888)>, <ExcThread(validate_post, started 140385124853504)>, <ExcThread(copytool_in, started 140385166817024)>, <ExcThread(queue_monitor, started 140385007421184)>, <ExcThread(failed_post, started 140385116460800)>, <ExcThread(create_data_payload, started 140385024206592)>, <ExcThread(monitor, started 140385141638912)>, <ExcThread(queue_monitoring, started 140385511487232)>]
2019-10-08 09:09:01,914 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-10-08 09:09:02,049 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-10-08 09:09:02,049 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-10-08 09:09:02,091 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-10-08 09:09:02,092 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-10-08 09:09:02,201 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads
2019-10-08 09:09:02,202 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140385706690368)>, <ExcThread(job, started 140385545058048)>, <ExcThread(payload, started 140385158424320)>, <ExcThread(copytool_out, started 140385519879936)>, <ExcThread(execute_payloads, started 140385032599296)>, <ExcThread(validate_pre, started 140385133246208)>, <ExcThread(validate, started 140385536665344)>, <ExcThread(job_monitor, started 140385015813888)>, <ExcThread(validate_post, started 140385124853504)>, <ExcThread(copytool_in, started 140385166817024)>, <ExcThread(failed_post, started 140385116460800)>, <ExcThread(create_data_payload, started 140385024206592)>, <ExcThread(queue_monitoring, started 140385511487232)>]
2019-10-08 09:09:02,311 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-10-08 09:09:02,312 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-10-08 09:09:02,419 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads
2019-10-08 09:09:02,420 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140385706690368)>, <ExcThread(payload, started 140385158424320)>, <ExcThread(copytool_out, started 140385519879936)>, <ExcThread(execute_payloads, started 140385032599296)>, <ExcThread(validate_pre, started 140385133246208)>, <ExcThread(validate, started 140385536665344)>, <ExcThread(job_monitor, started 140385015813888)>, <ExcThread(validate_post, started 140385124853504)>, <ExcThread(copytool_in, started 140385166817024)>, <ExcThread(failed_post, started 140385116460800)>, <ExcThread(create_data_payload, started 140385024206592)>, <ExcThread(queue_monitoring, started 140385511487232)>]
2019-10-08 09:09:02,894 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-10-08 09:09:03,003 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-10-08 09:09:03,004 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-10-08 09:09:03,025 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads
2019-10-08 09:09:03,026 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140385706690368)>, <ExcThread(execute_payloads, started 140385032599296)>, <ExcThread(validate_pre, started 140385133246208)>, <ExcThread(validate, started 140385536665344)>, <ExcThread(job_monitor, started 140385015813888)>, <ExcThread(validate_post, started 140385124853504)>, <ExcThread(copytool_in, started 140385166817024)>, <ExcThread(failed_post, started 140385116460800)>, <ExcThread(create_data_payload, started 140385024206592)>, <ExcThread(queue_monitoring, started 140385511487232)>]
2019-10-08 09:09:03,072 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-10-08 09:09:03,073 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-10-08 09:09:03,090 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-10-08 09:09:03,091 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-10-08 09:09:03,092 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-10-08 09:09:03,127 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads
2019-10-08 09:09:03,128 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140385706690368)>, <ExcThread(execute_payloads, started 140385032599296)>, <ExcThread(validate_pre, started 140385133246208)>, <ExcThread(job_monitor, started 140385015813888)>, <ExcThread(queue_monitoring, started 140385511487232)>]
2019-10-08 09:09:03,184 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-10-08 09:09:03,184 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-10-08 09:09:03,230 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-10-08 09:09:03,230 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140385706690368)>, <ExcThread(job_monitor, started 140385015813888)>, <ExcThread(queue_monitoring, started 140385511487232)>]
2019-10-08 09:09:03,373 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-10-08 09:09:06,375 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-10-08 09:09:06,384 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-10-08 09:09:06,384 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140385706690368)>, <ExcThread(job_monitor, started 140385015813888)>]
2019-10-08 09:09:20,659 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 74 s)
2019-10-08 09:09:20,660 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-10-08 09:09:20,705 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-10-08 09:09:20,705 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-10-08 09:09:20,706 | INFO | MainThread | root | wrap_up | pilot has finished
2019-10-08 09:09:21 UTC [wrapper] ==== pilot stdout END ====
2019-10-08 09:09:21 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-10-08 09:09:21 UTC [wrapper] Pilot exit status: 0
2019-10-08 09:09:21 UTC [wrapper] STATUSCODE: 0
2019-10-08 09:09:21 UTC [wrapper] apfmon messages muted
---- find pandaIDs.out ----
total 60
-rw------- 1 boinc boinc 11357 Jul 25 16:38 LICENSE
-rw------- 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
-rw------- 1 boinc boinc 9 Sep 9 13:04 PILOTVERSION
-rw------- 1 boinc boinc 2251 Jul 25 16:38 README.md
-rw------- 1 boinc boinc 221 Jul 25 16:38 TODO.md
-rw------- 1 boinc boinc 11 Oct 7 16:47 pandaIDs.out
drwx------ 14 boinc boinc 4096 Oct 7 16:47 pilot
-rwx------ 1 boinc boinc 20136 Sep 9 13:04 pilot.py
-rw------- 1 boinc boinc 760 Aug 22 11:01 setup.py
2019-10-08 09:09:21 UTC [wrapper] pandaIDs.out files:
-rw------- 1 boinc boinc 11 Oct 7 16:47 /var/lib/boinc-client/slots/8/pilot2/pandaIDs.out
2019-10-08 09:09:21 UTC [wrapper] pandaIDs.out content:
4497949211
2019-10-08 09:09:21 UTC [wrapper] Test setup, not cleaning
2019-10-08 09:09:21 UTC [wrapper] ==== wrapper stdout END ====
2019-10-08 09:09:21 UTC [wrapper] ==== wrapper stderr END ====
2019-10-08 09:09:21 UTC [wrapper] wrapper wrapperexiting ec=0, duration=66139
2019-10-08 09:09:21 UTC [wrapper] apfmon messages muted
2019-10-08 11:09:52,492: ***************diag file************
2019-10-08 11:09:52,493: runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=66139.15s
KernelTime=2581.57s
UserTime=255253.63s
CPUUsage=389%
MaxResidentMemory=2034964kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=17178
MinorPageFaults=31280724
Swaps=0
ForcedSwitches=5133317
WaitSwitches=32893472
Inputs=6529376
Outputs=1075016
SocketReceived=0
SocketSent=0
Signals=0
nodename=Crystal_Pellet@LinAH125
exitcode=0
2019-10-08 11:09:52,501: ******************************WorkDir***********************
2019-10-08 11:09:52,501: total 282476
drwxrwx--x 7 boinc boinc 4096 okt 8 11:09 .
drwxrwx--x 17 boinc boinc 4096 okt 5 15:23 ..
-rw------- 1 boinc boinc 7595387 okt 7 16:47 agis_ddmendpoints.json
-rw------- 1 boinc boinc 3956774 okt 7 16:47 agis_schedconf.cvmfs.json
drwx------ 2 boinc boinc 4096 okt 7 16:47 .alrb
drwxr-xr-x 3 boinc boinc 4096 okt 7 16:47 APPS
-rw------- 1 boinc boinc 549 okt 7 16:47 .asetup
-rw------- 1 boinc boinc 4550 okt 7 16:49 .asetup.save
drwx------ 2 boinc boinc 4096 okt 7 16:49 .asetup-sysbin_23744
-rw-r--r-- 1 boinc boinc 0 okt 7 16:39 boinc_lockfile
-rw-r--r-- 1 boinc boinc 8192 okt 8 11:09 boinc_mmap_file
-rw-r--r-- 1 boinc boinc 538 okt 8 10:45 boinc_task_state.xml
-rw-r--r-- 1 boinc boinc 272158928 okt 7 16:44 EVNT.18605762._000210.pool.root.1
-rw------- 1 boinc boinc 88401 okt 8 11:08 heartbeat.json
-rw-r--r-- 1 boinc boinc 5855 okt 7 16:39 init_data.xml
-rw-r--r-- 1 boinc boinc 267507 okt 7 16:44 input.tar.gz
-rw-r--r-- 1 boinc boinc 112 okt 7 16:39 job.xml
-rw------- 1 boinc boinc 3518694 okt 8 11:09 log.19056259._011196.job.log.1
-rw------- 1 boinc boinc 1152924 okt 8 11:08 log.19056259._011196.job.log.tgz.1
-rw------- 1 boinc boinc 844 okt 8 11:08 memory_monitor_summary.json
-rw------- 1 boinc boinc 463 okt 8 11:09 output.list
-rw------- 1 boinc boinc 2843 okt 6 08:54 pandaJobData.out
drwx------ 3 boinc boinc 4096 okt 7 16:47 pilot2
-rw-r--r-- 1 boinc boinc 259319 okt 6 08:29 pilot2.tar.gz
-rw------- 1 boinc boinc 11387 okt 8 11:09 pilotlog.txt
-rw-r--r-- 1 boinc boinc 4480 okt 6 08:54 queuedata.json
-rw------- 1 boinc boinc 510 okt 8 11:09 qZmMDmxbFbvnShfckohDCDFpABFKDmABFKDmsKfWDmABFKDmsnHSVo.diag
-rw-r--r-- 1 boinc boinc 815 okt 7 16:44 RTE.tar.gz
-rwxr-xr-x 1 boinc boinc 7950 okt 7 16:39 run_atlas
-rwx------ 1 boinc boinc 12762 okt 6 08:54 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc 692 okt 8 11:09 runtime_log
-rw-r--r-- 1 boinc boinc 7145 okt 8 11:09 runtime_log.err
drwxrwx--x 2 boinc boinc 4096 okt 8 11:09 shared
-rw-r--r-- 1 boinc boinc 8688 okt 7 16:44 start_atlas.sh
-rw-r--r-- 1 boinc boinc 60887 okt 8 11:09 stderr.txt
-rw-r--r-- 1 boinc boinc 107 okt 7 16:39 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc 29 okt 8 11:09 wrapper_checkpoint.txt
2019-10-08 11:09:52,501: running start_atlas return value is 0
2019-10-08 11:09:52,501: Parent exit 0
2019-10-08 11:09:52,504: child process exit 0
11:09:53 (16338): run_atlas exited; CPU time 255283.169806
11:09:53 (16338): called boinc_finish(0)
</stderr_txt>
]]>
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