Name | 4cSMDmXGkbvnShfckohDCDFpABFKDmABFKDmO1PXDmABFKDmAzrXsm_0 |
Workunit | 1943642 |
Created | 7 Oct 2019, 15:38:19 UTC |
Sent | 7 Oct 2019, 18:32:13 UTC |
Report deadline | 14 Oct 2019, 18:32:13 UTC |
Received | 8 Oct 2019, 16:11:50 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 7 hours 21 min 45 sec |
CPU time | 1 days 4 hours 11 min 36 sec |
Validate state | Valid |
Credit | 713.96 |
Device peak FLOPS | 11.64 GFLOPS |
Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.81 GB |
Peak swap size | 2.58 GB |
Peak disk usage | 757.86 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 09:49:38 (9730): wrapper (7.7.26015): starting 09:49:38 (9730): wrapper: running run_atlas (--nthreads 4) 2019-10-08 09:49:39,270: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img 2019-10-08 09:49:39,270: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-10-08 09:49:39,271: THREADS=4 2019-10-08 09:49:39,273: Checking for CVMFS 2019-10-08 09:50:04,005: CVMFS is installed 2019-10-08 09:50:04,005: Checking Singularity... 2019-10-08 09:50:04,272: Singularity is installed, version singularity version 3.2.1-1 2019-10-08 09:50:04,272: Testing the function of Singularity... 2019-10-08 09:50:04,273: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname 2019-10-08 09:50:13,243: Singularity Works... 2019-10-08 09:50:13,243: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-10-08 09:50:13,689: copy /home/grid/slots/0/shared/input.tar.gz 2019-10-08 09:50:13,690: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-10-08 09:50:13,691: copy /home/grid/slots/0/shared/start_atlas.sh 2019-10-08 09:50:13,691: export ATHENA_PROC_NUMBER=4; 2019-10-08 09:50:13,725: start atlas job with PandaID=4502119140 2019-10-08 09:50:13,725: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-10-08 17:11:21,053: running cmd return value is 0 2019-10-08 17:11:21,059: Moving ./HITS.19000492._021875.pool.root.1 to shared/HITS.pool.root.1 2019-10-08 17:11:21,059: HITS result file: 2019-10-08 17:11:21,074: -rw-------. 1 grid grid 249891528 Oct 8 17:09 shared/HITS.pool.root.1 2019-10-08 17:11:21,075: *****************The last 200 lines of the pilot log****************** 2019-10-08 17:11:21,083: "cpuTime": 0, "wallTime": 0 }, "wallTime": 173 } }, "machine": { "cpu_family": "6", "linux_distribution": [ "CentOS Linux", "7.6.1810", "Core" ], "model": "61", "model_name": "Intel Core Processor (Broadwell, IBRS)", "node": "dcameron04.cern.ch", "platform": "Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core" }, "transform": { "cpuEfficiency": 0.9635, "cpuPWEfficiency": 0.9663, "cpuTime": 9, "cpuTimeTotal": 101626, "externalCpuTime": 215, "processedEvents": 200, "trfPredata": null, "wallTime": 26292 } } } 2019-10-08 15:10:13,369 | DEBUG | queue_monitor | pilot.util.auxiliary.4502119140 | update_server | xml:will send fileinfo 2019-10-08 15:10:13,370 | INFO | queue_monitor | pilot.control.job.4502119140 | send_state | pilot will not update the server (heartbeat message will be written to file) 2019-10-08 15:10:13,370 | INFO | queue_monitor | pilot.control.job.4502119140 | send_state | job 4502119140 has finished - writing final server update 2019-10-08 15:10:13,375 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570521097.0, 1570521158.0, 1570521219.0, 1570521280.0, 1570521341.0, 1570521402.0, 1570521463.0, 1570521524.0, 1570521585.0, 1570521646.0, 1570521707.0, 1570521768.0, 1570521829.0, 1570521890.0, 1570521951.0, 1570522012.0, 1570522073.0, 1570522134.0, 1570522195.0, 1570522256.0, 1570522317.0, 1570522378.0, 1570522439.0, 1570522500.0, 1570522561.0, 1570522622.0, 1570522683.0, 1570522744.0, 1570522805.0, 1570522866.0, 1570522927.0, 1570522988.0, 1570523049.0, 1570523110.0, 1570523171.0, 1570523232.0, 1570523293.0, 1570523354.0, 1570523415.0, 1570523476.0, 1570523537.0, 1570523598.0, 1570523659.0, 1570523720.0, 1570523781.0, 1570523842.0, 1570523903.0, 1570523964.0, 1570524025.0, 1570524086.0, 1570524147.0, 1570524208.0, 1570524269.0, 1570524330.0, 1570524391.0, 1570524452.0, 1570524513.0, 1570524574.0, 1570524635.0, 1570524696.0, 1570524757.0, 1570524818.0, 1570524879.0, 1570524940.0, 1570525001.0, 1570525062.0, 1570525123.0, 1570525184.0, 1570525245.0, 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1570542630.0, 1570542691.0, 1570542752.0, 1570542813.0, 1570542874.0, 1570542935.0, 1570542996.0, 1570543057.0, 1570543118.0, 1570543179.0, 1570543240.0, 1570543301.0, 1570543362.0, 1570543423.0, 1570543484.0, 1570543545.0, 1570543606.0, 1570543667.0, 1570543728.0, 1570543789.0, 1570543850.0, 1570543911.0, 1570543972.0, 1570544033.0, 1570544094.0, 1570544155.0, 1570544216.0, 1570544277.0, 1570544338.0, 1570544399.0, 1570544460.0, 1570544521.0, 1570544582.0, 1570544643.0, 1570544704.0, 1570544765.0, 1570544826.0, 1570544887.0, 1570544948.0, 1570545009.0, 1570545070.0, 1570545131.0, 1570545192.0, 1570545253.0, 1570545314.0, 1570545375.0, 1570545436.0, 1570545497.0, 1570545558.0, 1570545619.0, 1570545680.0, 1570545741.0, 1570545802.0, 1570545863.0, 1570545924.0, 1570545985.0, 1570546046.0, 1570546107.0, 1570546168.0, 1570546229.0, 1570546290.0, 1570546351.0, 1570546412.0, 1570546473.0, 1570546534.0, 1570546595.0, 1570546656.0, 1570546717.0, 1570546778.0, 1570546839.0, 1570546900.0, 1570546961.0, 1570547022.0, 1570547083.0, 1570547144.0, 1570547205.0, 1570547266.0, 1570547327.0, 1570547388.0], y=[] (must be same and length>=2) 2019-10-08 15:10:13,376 | DEBUG | queue_monitor | pilot.util.auxiliary.4502119140 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=200 workDirSize=24601181" 2019-10-08 15:10:13,376 | INFO | queue_monitor | pilot.control.job.4502119140 | get_data_structure | total number of processed events: 200 (read) 2019-10-08 15:10:13,376 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4502119140/memory_monitor_summary.json (trf name=prmon) 2019-10-08 15:10:13,378 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1858589, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 718278351, 'wtime': 26312, 'rss': 9415996, 'write_bytes': 518270976, 'vmem': 14154936, 'read_bytes': 4301574144, 'stime': 254, 'tx_bytes': 51402037, 'pss': 2709616, 'wchar': 516275477, 'rchar': 3919596083, 'tx_packets': 378173, 'swap': 0, 'utime': 102323}, 'Avg': {'write_bytes': 19696, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 27297, 'rx_packets': 70, 'vmem': 13792069, 'read_bytes': 163477, 'swap': 0, 'tx_bytes': 1953, 'pss': 2591105, 'wchar': 19620, 'rchar': 148960, 'tx_packets': 14, 'rss': 9159724}} 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | .............................. 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . Timing measurements: 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . get job = 0 s 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . initial setup = 1 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . payload setup = 0 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . total setup = 1 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . stage-in = 0 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . payload execution = 26334 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . stage-out = 3 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | .............................. 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-10-08 15:10:13,379 | DEBUG | queue_monitor | pilot.util.auxiliary.4502119140 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4502119140/pandatracerlog.txt (ignoring) 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4502119140/pilotlog.txt 2019-10-08 15:10:13,415 | WARNING | queue_monitor | pilot.util.auxiliary.4502119140 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log: - Log from pilotlog.txt -2019-10-08 15:10:13,375 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570521097.0, 1570521158.0, 1570521219.0, 1570521280.0, 1570521341.0, 1570521402.0, 1570521463.0, 1570521524.0, 1570521585.0, 1570521646.0, 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1570530369.0, 1570530430.0, 1570530491.0, 1570530552.0, 1570530613.0, 1570530674.0, 1570530735.0, 1570530796.0, 1570530857.0, 1570530918.0, 1570530979.0, 1570531040.0, 1570531101.0, 1570531162.0, 1570531223.0, 1570531284.0, 1570531345.0, 1570531406.0, 1570531467.0, 1570531528.0, 1570531589.0, 1570531650.0, 1570531711.0, 1570531772.0, 1570531833.0, 1570531894.0, 1570531955.0, 1570532016.0, 1570532077.0, 1570532138.0, 1570532199.0, 1570532260.0, 1570532321.0, 1570532382.0, 1570532443.0, 1570532504.0, 1570532565.0, 1570532626.0, 1570532687.0, 1570532748.0, 1570532809.0, 1570532870.0, 1570532931.0, 1570532992.0, 1570533053.0, 1570533114.0, 1570533175.0, 1570533236.0, 1570533297.0, 1570533358.0, 1570533419.0, 1570533480.0, 1570533541.0, 1570533602.0, 1570533663.0, 1570533724.0, 1570533785.0, 1570533846.0, 1570533907.0, 1570533968.0, 1570534029.0, 1570534090.0, 1570534151.0, 1570534212.0, 1570534273.0, 1570534334.0, 1570534395.0, 1570534456.0, 1570534517.0, 1570534578.0, 1570534639.0, 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1570539031.0, 1570539092.0, 1570539153.0, 1570539214.0, 1570539275.0, 1570539336.0, 1570539397.0, 1570539458.0, 1570539519.0, 1570539580.0, 1570539641.0, 1570539702.0, 1570539763.0, 1570539824.0, 1570539885.0, 1570539946.0, 1570540007.0, 1570540068.0, 1570540129.0, 1570540190.0, 1570540251.0, 1570540312.0, 1570540373.0, 1570540434.0, 1570540495.0, 1570540556.0, 1570540617.0, 1570540678.0, 1570540739.0, 1570540800.0, 1570540861.0, 1570540922.0, 1570540983.0, 1570541044.0, 1570541105.0, 1570541166.0, 1570541227.0, 1570541288.0, 1570541349.0, 1570541410.0, 1570541471.0, 1570541532.0, 1570541593.0, 1570541654.0, 1570541715.0, 1570541776.0, 1570541837.0, 1570541898.0, 1570541959.0, 1570542020.0, 1570542081.0, 1570542142.0, 1570542203.0, 1570542264.0, 1570542325.0, 1570542386.0, 1570542447.0, 1570542508.0, 1570542569.0, 1570542630.0, 1570542691.0, 1570542752.0, 1570542813.0, 1570542874.0, 1570542935.0, 1570542996.0, 1570543057.0, 1570543118.0, 1570543179.0, 1570543240.0, 1570543301.0, 1570543362.0, 1570543423.0, 1570543484.0, 1570543545.0, 1570543606.0, 1570543667.0, 1570543728.0, 1570543789.0, 1570543850.0, 1570543911.0, 1570543972.0, 1570544033.0, 1570544094.0, 1570544155.0, 1570544216.0, 1570544277.0, 1570544338.0, 1570544399.0, 1570544460.0, 1570544521.0, 1570544582.0, 1570544643.0, 1570544704.0, 1570544765.0, 1570544826.0, 1570544887.0, 1570544948.0, 1570545009.0, 1570545070.0, 1570545131.0, 1570545192.0, 1570545253.0, 1570545314.0, 1570545375.0, 1570545436.0, 1570545497.0, 1570545558.0, 1570545619.0, 1570545680.0, 1570545741.0, 1570545802.0, 1570545863.0, 1570545924.0, 1570545985.0, 1570546046.0, 1570546107.0, 1570546168.0, 1570546229.0, 1570546290.0, 1570546351.0, 1570546412.0, 1570546473.0, 1570546534.0, 1570546595.0, 1570546656.0, 1570546717.0, 1570546778.0, 1570546839.0, 1570546900.0, 1570546961.0, 1570547022.0, 1570547083.0, 1570547144.0, 1570547205.0, 1570547266.0, 1570547327.0, 1570547388.0], y=[] (must be same and length>=2) 2019-10-08 15:10:13,376 | DEBUG | queue_monitor | pilot.util.auxiliary.4502119140 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=200 workDirSize=24601181" 2019-10-08 15:10:13,376 | INFO | queue_monitor | pilot.control.job.4502119140 | get_data_structure | total number of processed events: 200 (read) 2019-10-08 15:10:13,376 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4502119140/memory_monitor_summary.json (trf name=prmon) 2019-10-08 15:10:13,378 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1858589, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 718278351, 'wtime': 26312, 'rss': 9415996, 'write_bytes': 518270976, 'vmem': 14154936, 'read_bytes': 4301574144, 'stime': 254, 'tx_bytes': 51402037, 'pss': 2709616, 'wchar': 516275477, 'rchar': 3919596083, 'tx_packets': 378173, 'swap': 0, 'utime': 102323}, 'Avg': {'write_bytes': 19696, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 27297, 'rx_packets': 70, 'vmem': 13792069, 'read_bytes': 163477, 'swap': 0, 'tx_bytes': 1953, 'pss': 2591105, 'wchar': 19620, 'rchar': 148960, 'tx_packets': 14, 'rss': 9159724}} 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | .............................. 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . Timing measurements: 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . get job = 0 s 2019-10-08 15:10:13,378 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . initial setup = 1 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . payload setup = 0 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . total setup = 1 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . stage-in = 0 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . payload execution = 26334 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | . stage-out = 3 s 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | timing_report | .............................. 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.auxiliary.4502119140 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-10-08 15:10:13,379 | DEBUG | queue_monitor | pilot.util.auxiliary.4502119140 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4502119140/pandatracerlog.txt (ignoring) 2019-10-08 15:10:13,379 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4502119140/pilotlog.txt 2019-10-08 15:10:13,417 | DEBUG | queue_monitor | pilot.control.job.4502119140 | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json 2019-10-08 15:10:13,417 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4502119140 was dequeued from the monitored payloads queue 2019-10-08 15:10:14,011 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | 2019-10-08 15:10:14,011 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | job summary report 2019-10-08 15:10:14,011 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | -------------------------------------------------- 2019-10-08 15:10:14,011 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | PanDA job id: 4502119140 2019-10-08 15:10:14,011 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | task id: 19000492 2019-10-08 15:10:14,011 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | errors: (none) 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | status: LOG_TRANSFER = DONE 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | pilot state: finished 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | transexitcode: 0 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | exeerrorcode: 0 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | exeerrordiag: 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | exitcode: 0 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | exitmsg: OK 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | cpuconsumptiontime: 101950 s 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | nevents: 200 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | neventsw: 0 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | pid: 16922 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | pgrp: 16922 2019-10-08 15:10:14,012 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | corecount: 4 2019-10-08 15:10:14,013 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | event service: False 2019-10-08 15:10:14,013 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | -------------------------------------------------- 2019-10-08 15:10:14,013 | INFO | retrieve | pilot.util.auxiliary.4502119140 | make_job_report | 2019-10-08 15:10:14,013 | INFO | retrieve | pilot.control.job.4502119140 | has_job_completed | job 4502119140 has completed 2019-10-08 15:10:14,013 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-10-08 15:10:14,035 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4502119140 2019-10-08 15:10:15,041 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [16922] 2019-10-08 15:10:15,041 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 16922 2019-10-08 15:10:15,041 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-10-08 15:10:15,068 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s) 2019-10-08 15:10:16,046 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-10-08 15:10:16,047 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=16922 2019-10-08 15:10:16,143 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [16922] (in reverse order) 2019-10-08 15:10:16,195 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-10-08 15:10:16,195 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-10-08 15:10:16,195 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-10-08 15:10:16,195 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-10-08 15:10:16,207 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-08 15:10:16,207 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) *** 2019-10-08 15:10:16,207 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-08 15:10:16,207 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-10-08 15:10:16,207 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM 2019-10-08 15:10:16,207 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-10-08 15:10:16,336 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :core-4.1-amd64:core-4.1-noarch Distributor ID: CentOS Description: CentOS Linux release 7.6.1810 (Core) Release: 7.6.1810 Codename: Core 2019-10-08 15:10:16,336 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-08 15:10:16,839 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-10-08 15:10:16,866 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (20231225344 B) 2019-10-08 15:10:16,867 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-10-08 15:10:16,867 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-10-08 15:10:16,895 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-10-08 15:10:17,196 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-10-08 15:10:17,196 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-10-08 15:10:17,301 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-10-08 15:10:17,301 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(copytool_in, started 139994383509248)>, <ExcThread(monitor, started 139994375116544)>, <ExcThread(create_data_payload, started 139994911987456)>, <ExcThread(validate_pre, started 139994366723840)>, <ExcThread(data, started 139994920380160)>, <ExcThread(queue_monitor, started 139994358331136)>, <ExcThread(execute_payloads, started 139993855031040)>, <ExcThread(validate, started 139994928772864)>, <ExcThread(validate_post, started 139994349938432)>, <ExcThread(payload, started 139994886809344)>, <ExcThread(failed_post, started 139994341545728)>, <ExcThread(queue_monitoring, started 139994878416640)>, <ExcThread(copytool_out, started 139994903594752)>] 2019-10-08 15:10:17,410 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-10-08 15:10:17,430 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-10-08 15:10:17,470 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-10-08 15:10:17,538 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-10-08 15:10:17,538 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-10-08 15:10:17,668 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-10-08 15:10:17,668 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(copytool_in, started 139994383509248)>, <ExcThread(monitor, started 139994375116544)>, <ExcThread(create_data_payload, started 139994911987456)>, <ExcThread(data, started 139994920380160)>, <ExcThread(queue_monitor, started 139994358331136)>, <ExcThread(execute_payloads, started 139993855031040)>, <ExcThread(validate, started 139994928772864)>, <ExcThread(validate_post, started 139994349938432)>, <ExcThread(queue_monitoring, started 139994878416640)>, <ExcThread(copytool_out, started 139994903594752)>] 2019-10-08 15:10:17,696 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-10-08 15:10:17,696 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-10-08 15:10:17,856 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-10-08 15:10:17,869 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-10-08 15:10:17,870 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(copytool_in, started 139994383509248)>, <ExcThread(create_data_payload, started 139994911987456)>, <ExcThread(queue_monitor, started 139994358331136)>, <ExcThread(execute_payloads, started 139993855031040)>, <ExcThread(validate, started 139994928772864)>, <ExcThread(validate_post, started 139994349938432)>, <ExcThread(queue_monitoring, started 139994878416640)>, <ExcThread(copytool_out, started 139994903594752)>] 2019-10-08 15:10:17,896 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-10-08 15:10:17,970 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-10-08 15:10:17,971 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(copytool_in, started 139994383509248)>, <ExcThread(create_data_payload, started 139994911987456)>, <ExcThread(queue_monitor, started 139994358331136)>, <ExcThread(execute_payloads, started 139993855031040)>, <ExcThread(validate, started 139994928772864)>, <ExcThread(validate_post, started 139994349938432)>, <ExcThread(queue_monitoring, started 139994878416640)>] 2019-10-08 15:10:18,002 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-10-08 15:10:18,002 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-10-08 15:10:18,072 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-10-08 15:10:18,072 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(copytool_in, started 139994383509248)>, <ExcThread(create_data_payload, started 139994911987456)>, <ExcThread(execute_payloads, started 139993855031040)>, <ExcThread(validate, started 139994928772864)>, <ExcThread(validate_post, started 139994349938432)>, <ExcThread(queue_monitoring, started 139994878416640)>] 2019-10-08 15:10:18,172 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-10-08 15:10:18,173 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-10-08 15:10:18,173 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(copytool_in, started 139994383509248)>, <ExcThread(create_data_payload, started 139994911987456)>, <ExcThread(execute_payloads, started 139993855031040)>, <ExcThread(validate, started 139994928772864)>, <ExcThread(queue_monitoring, started 139994878416640)>] 2019-10-08 15:10:18,266 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-10-08 15:10:18,270 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-10-08 15:10:18,273 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-10-08 15:10:18,274 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-10-08 15:10:18,274 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(create_data_payload, started 139994911987456)>, <ExcThread(queue_monitoring, started 139994878416640)>] 2019-10-08 15:10:18,351 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-10-08 15:10:18,375 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-10-08 15:10:18,375 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>, <ExcThread(queue_monitoring, started 139994878416640)>] 2019-10-08 15:10:20,411 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-10-08 15:10:20,492 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-10-08 15:10:20,492 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139995174283072)>, <ExcThread(job_monitor, started 139994391901952)>] 2019-10-08 15:11:16,671 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 134 s) 2019-10-08 15:11:16,671 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-10-08 15:11:16,689 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-10-08 15:11:16,689 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-10-08 15:11:16,690 | INFO | MainThread | root | wrap_up | pilot has finished 2019-10-08 15:11:16 UTC [wrapper] ==== pilot stdout END ==== 2019-10-08 15:11:16 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-10-08 15:11:16 UTC [wrapper] Pilot exit status: 0 2019-10-08 15:11:16 UTC [wrapper] STATUSCODE: 0 2019-10-08 15:11:16 UTC [wrapper] apfmon messages muted ---- find pandaIDs.out ---- total 56 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE -rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN -rw-------. 1 grid grid 11 Oct 8 09:50 pandaIDs.out drwx------. 14 grid grid 216 Oct 8 09:50 pilot -rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py -rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 760 Aug 22 11:01 setup.py -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-10-08 15:11:16 UTC [wrapper] pandaIDs.out files: -rw-------. 1 grid grid 11 Oct 8 09:50 /home/grid/slots/0/pilot2/pandaIDs.out 2019-10-08 15:11:16 UTC [wrapper] pandaIDs.out content: 4502119140 2019-10-08 15:11:16 UTC [wrapper] Test setup, not cleaning 2019-10-08 15:11:16 UTC [wrapper] ==== wrapper stdout END ==== 2019-10-08 15:11:16 UTC [wrapper] ==== wrapper stderr END ==== 2019-10-08 15:11:16 UTC [wrapper] wrapper wrapperexiting ec=0, duration=26457 2019-10-08 15:11:16 UTC [wrapper] apfmon messages muted 2019-10-08 17:11:21,088: ***************diag file************ 2019-10-08 17:11:21,088: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=26457.52s KernelTime=774.69s UserTime=101483.96s CPUUsage=386% MaxResidentMemory=1947064kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=25578 MinorPageFaults=23857445 Swaps=0 ForcedSwitches=12731761 WaitSwitches=12819420 Inputs=8504944 Outputs=1060664 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-10-08 17:11:21,095: ******************************WorkDir*********************** 2019-10-08 17:11:21,095: total 271600 drwxrwx--x. 7 grid grid 4096 Oct 8 17:11 . drwxr-x--x. 6 grid grid 42 Sep 26 14:51 .. -rw-------. 1 grid grid 519 Oct 8 17:11 4cSMDmXGkbvnShfckohDCDFpABFKDmABFKDmO1PXDmABFKDmAzrXsm.diag -rw-------. 1 grid grid 7595462 Oct 8 09:50 agis_ddmendpoints.json -rw-------. 1 grid grid 3936722 Oct 8 09:50 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Oct 8 09:50 .alrb drwxr-xr-x. 3 grid grid 17 Oct 8 09:50 APPS -rw-------. 1 grid grid 538 Oct 8 09:50 .asetup -rw-------. 1 grid grid 4506 Oct 8 09:51 .asetup.save drwx------. 2 grid grid 6 Oct 8 09:51 .asetup-sysbin_16923 -rw-rw-r--. 1 grid grid 0 Oct 8 09:49 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Oct 8 17:11 boinc_mmap_file -rw-rw-r--. 1 grid grid 538 Oct 8 17:03 boinc_task_state.xml -rw-rw-r--. 1 grid grid 263597475 Oct 8 09:50 EVNT.18605549._000335.pool.root.1 -rw-------. 1 grid grid 64833 Oct 8 17:10 heartbeat.json -rw-rw-r--. 1 grid grid 5865 Oct 8 09:49 init_data.xml -rw-rw-r--. 1 grid grid 267513 Oct 8 09:50 input.tar.gz -rw-rw-r--. 1 grid grid 112 Oct 8 09:49 job.xml -rw-------. 1 grid grid 1273276 Oct 8 17:11 log.19000492._021875.job.log.1 -rw-------. 1 grid grid 917485 Oct 8 17:10 log.19000492._021875.job.log.tgz.1 -rw-------. 1 grid grid 848 Oct 8 17:10 memory_monitor_summary.json -rw-------. 1 grid grid 463 Oct 8 17:11 output.list -rw-------. 1 grid grid 2843 Oct 7 17:38 pandaJobData.out drwx------. 3 grid grid 229 Oct 8 09:50 pilot2 -rw-r--r--. 1 grid grid 259319 Oct 7 17:26 pilot2.tar.gz -rw-------. 1 grid grid 12459 Oct 8 17:11 pilotlog.txt -rw-r--r--. 1 grid grid 4480 Oct 7 17:38 queuedata.json -rw-rw-r--. 1 grid grid 815 Oct 8 09:50 RTE.tar.gz -rwxr-xr-x. 1 grid grid 7950 Oct 8 09:49 run_atlas -rwx------. 1 grid grid 12762 Oct 7 17:38 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Oct 8 17:11 runtime_log -rw-rw-r--. 1 grid grid 6899 Oct 8 17:11 runtime_log.err drwxrwx--x. 2 grid grid 131 Oct 8 17:11 shared -rw-rw-r--. 1 grid grid 8688 Oct 8 09:50 start_atlas.sh -rw-rw-r--. 1 grid grid 43466 Oct 8 17:11 stderr.txt -rw-rw-r--. 1 grid grid 107 Oct 8 09:49 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 29 Oct 8 17:11 wrapper_checkpoint.txt 2019-10-08 17:11:21,095: running start_atlas return value is 0 2019-10-08 17:11:21,095: Parent exit 0 2019-10-08 17:11:21,097: child process exit 0 17:11:21 (9730): run_atlas exited; CPU time 101496.380447 17:11:21 (9730): called boinc_finish(0) </stderr_txt> ]]>
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