| Name | 8lhKDmk2kbvnShfckohDCDFpABFKDmABFKDmWORXDmABFKDm2X2pLo_0 |
| Workunit | 1943658 |
| Created | 7 Oct 2019, 16:28:11 UTC |
| Sent | 7 Oct 2019, 18:32:13 UTC |
| Report deadline | 14 Oct 2019, 18:32:13 UTC |
| Received | 8 Oct 2019, 8:49:58 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3911 |
| Run time | 7 hours 3 min 55 sec |
| CPU time | 1 days 2 hours 49 min 33 sec |
| Validate state | Valid |
| Credit | 685.15 |
| Device peak FLOPS | 11.64 GFLOPS |
| Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.81 GB |
| Peak swap size | 2.58 GB |
| Peak disk usage | 675.49 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:45:41 (23202): wrapper (7.7.26015): starting
02:45:41 (23202): wrapper: running run_atlas (--nthreads 4)
2019-10-08 02:45:41,503: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
2019-10-08 02:45:41,503: sys.argv = ['run_atlas', '--nthreads', '4']
2019-10-08 02:45:41,505: THREADS=4
2019-10-08 02:45:41,507: Checking for CVMFS
2019-10-08 02:45:43,294: CVMFS is installed
2019-10-08 02:45:43,294: Checking Singularity...
2019-10-08 02:45:43,857: Singularity is installed, version singularity version 3.2.1-1
2019-10-08 02:45:43,857: Testing the function of Singularity...
2019-10-08 02:45:43,857: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
2019-10-08 02:45:51,882: Singularity Works...
2019-10-08 02:45:51,882: copy /home/grid/slots/0/shared/ATLAS.root_0
2019-10-08 02:45:52,183: copy /home/grid/slots/0/shared/input.tar.gz
2019-10-08 02:45:52,185: copy /home/grid/slots/0/shared/RTE.tar.gz
2019-10-08 02:45:52,185: copy /home/grid/slots/0/shared/start_atlas.sh
2019-10-08 02:45:52,185: export ATHENA_PROC_NUMBER=4;
2019-10-08 02:45:52,215: start atlas job with PandaID=4502122919
2019-10-08 02:45:52,215: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err
2019-10-08 09:49:34,241: running cmd return value is 0
2019-10-08 09:49:34,246: Moving ./HITS.19000550._018059.pool.root.1 to shared/HITS.pool.root.1
2019-10-08 09:49:34,247: HITS result file:
2019-10-08 09:49:34,270: -rw-------. 1 grid grid 241086773 Oct 8 09:48 shared/HITS.pool.root.1
2019-10-08 09:49:34,270: *****************The last 200 lines of the pilot log******************
2019-10-08 09:49:34,277: "total": {
"cpuTime": 83,
"wallTime": 158
},
"validation": {
"cpuTime": 0,
"wallTime": 0
},
"wallTime": 154
}
},
"machine": {
"cpu_family": "6",
"linux_distribution": [
"CentOS Linux",
"7.6.1810",
"Core"
],
"model": "61",
"model_name": "Intel Core Processor (Broadwell, IBRS)",
"node": "dcameron04.cern.ch",
"platform": "Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
},
"transform": {
"cpuEfficiency": 0.9532,
"cpuPWEfficiency": 0.9559,
"cpuTime": 9,
"cpuTimeTotal": 96682,
"externalCpuTime": 202,
"processedEvents": 200,
"trfPredata": null,
"wallTime": 25286
}
}
}
2019-10-08 07:49:07,323 | DEBUG | queue_monitor | pilot.util.auxiliary.4502122919 | update_server | xml:will send fileinfo
2019-10-08 07:49:07,323 | INFO | queue_monitor | pilot.control.job.4502122919 | send_state | pilot will not update the server (heartbeat message will be written to file)
2019-10-08 07:49:07,323 | INFO | queue_monitor | pilot.control.job.4502122919 | send_state | job 4502122919 has finished - writing final server update
2019-10-08 07:49:07,328 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570495607.0, 1570495668.0, 1570495729.0, 1570495790.0, 1570495851.0, 1570495912.0, 1570495973.0, 1570496034.0, 1570496095.0, 1570496156.0, 1570496217.0, 1570496278.0, 1570496339.0, 1570496400.0, 1570496461.0, 1570496522.0, 1570496583.0, 1570496644.0, 1570496705.0, 1570496766.0, 1570496827.0, 1570496888.0, 1570496949.0, 1570497010.0, 1570497071.0, 1570497132.0, 1570497193.0, 1570497254.0, 1570497315.0, 1570497376.0, 1570497437.0, 1570497498.0, 1570497559.0, 1570497620.0, 1570497681.0, 1570497742.0, 1570497803.0, 1570497864.0, 1570497925.0, 1570497986.0, 1570498047.0, 1570498108.0, 1570498169.0, 1570498230.0, 1570498291.0, 1570498352.0, 1570498413.0, 1570498474.0, 1570498535.0, 1570498596.0, 1570498657.0, 1570498718.0, 1570498779.0, 1570498840.0, 1570498901.0, 1570498962.0, 1570499023.0, 1570499084.0, 1570499145.0, 1570499206.0, 1570499267.0, 1570499328.0, 1570499389.0, 1570499450.0, 1570499511.0, 1570499572.0, 1570499633.0, 1570499694.0, 1570499755.0, 1570499816.0, 1570499877.0, 1570499938.0, 1570499999.0, 1570500060.0, 1570500121.0, 1570500182.0, 1570500243.0, 1570500304.0, 1570500365.0, 1570500426.0, 1570500487.0, 1570500548.0, 1570500609.0, 1570500670.0, 1570500731.0, 1570500792.0, 1570500853.0, 1570500914.0, 1570500975.0, 1570501036.0, 1570501097.0, 1570501158.0, 1570501219.0, 1570501280.0, 1570501341.0, 1570501402.0, 1570501463.0, 1570501524.0, 1570501585.0, 1570501646.0, 1570501707.0, 1570501768.0, 1570501829.0, 1570501890.0, 1570501951.0, 1570502012.0, 1570502073.0, 1570502134.0, 1570502195.0, 1570502256.0, 1570502317.0, 1570502378.0, 1570502439.0, 1570502500.0, 1570502561.0, 1570502622.0, 1570502683.0, 1570502744.0, 1570502805.0, 1570502866.0, 1570502927.0, 1570502988.0, 1570503049.0, 1570503110.0, 1570503171.0, 1570503232.0, 1570503293.0, 1570503354.0, 1570503415.0, 1570503476.0, 1570503537.0, 1570503598.0, 1570503659.0, 1570503720.0, 1570503781.0, 1570503842.0, 1570503903.0, 1570503964.0, 1570504025.0, 1570504086.0, 1570504147.0, 1570504208.0, 1570504269.0, 1570504330.0, 1570504391.0, 1570504452.0, 1570504513.0, 1570504574.0, 1570504635.0, 1570504696.0, 1570504757.0, 1570504818.0, 1570504879.0, 1570504940.0, 1570505001.0, 1570505062.0, 1570505123.0, 1570505184.0, 1570505245.0, 1570505306.0, 1570505367.0, 1570505428.0, 1570505489.0, 1570505550.0, 1570505611.0, 1570505672.0, 1570505733.0, 1570505794.0, 1570505855.0, 1570505916.0, 1570505977.0, 1570506038.0, 1570506099.0, 1570506160.0, 1570506221.0, 1570506282.0, 1570506343.0, 1570506404.0, 1570506465.0, 1570506526.0, 1570506587.0, 1570506648.0, 1570506709.0, 1570506770.0, 1570506831.0, 1570506892.0, 1570506953.0, 1570507014.0, 1570507075.0, 1570507136.0, 1570507197.0, 1570507258.0, 1570507319.0, 1570507380.0, 1570507441.0, 1570507502.0, 1570507563.0, 1570507624.0, 1570507685.0, 1570507746.0, 1570507807.0, 1570507868.0, 1570507929.0, 1570507990.0, 1570508051.0, 1570508112.0, 1570508173.0, 1570508234.0, 1570508295.0, 1570508356.0, 1570508417.0, 1570508478.0, 1570508539.0, 1570508600.0, 1570508661.0, 1570508722.0, 1570508783.0, 1570508844.0, 1570508905.0, 1570508966.0, 1570509027.0, 1570509088.0, 1570509149.0, 1570509210.0, 1570509271.0, 1570509332.0, 1570509393.0, 1570509454.0, 1570509515.0, 1570509576.0, 1570509637.0, 1570509698.0, 1570509759.0, 1570509820.0, 1570509881.0, 1570509942.0, 1570510003.0, 1570510064.0, 1570510125.0, 1570510186.0, 1570510247.0, 1570510308.0, 1570510369.0, 1570510430.0, 1570510491.0, 1570510552.0, 1570510613.0, 1570510674.0, 1570510735.0, 1570510796.0, 1570510857.0, 1570510918.0, 1570510979.0, 1570511040.0, 1570511101.0, 1570511162.0, 1570511223.0, 1570511284.0, 1570511345.0, 1570511406.0, 1570511467.0, 1570511528.0, 1570511589.0, 1570511650.0, 1570511711.0, 1570511772.0, 1570511833.0, 1570511894.0, 1570511955.0, 1570512016.0, 1570512077.0, 1570512138.0, 1570512199.0, 1570512260.0, 1570512321.0, 1570512382.0, 1570512443.0, 1570512504.0, 1570512565.0, 1570512626.0, 1570512687.0, 1570512748.0, 1570512809.0, 1570512870.0, 1570512931.0, 1570512992.0, 1570513053.0, 1570513114.0, 1570513175.0, 1570513236.0, 1570513297.0, 1570513358.0, 1570513419.0, 1570513480.0, 1570513541.0, 1570513602.0, 1570513663.0, 1570513724.0, 1570513785.0, 1570513846.0, 1570513907.0, 1570513968.0, 1570514029.0, 1570514090.0, 1570514151.0, 1570514212.0, 1570514273.0, 1570514334.0, 1570514395.0, 1570514456.0, 1570514517.0, 1570514578.0, 1570514639.0, 1570514700.0, 1570514761.0, 1570514822.0, 1570514883.0, 1570514944.0, 1570515005.0, 1570515066.0, 1570515127.0, 1570515188.0, 1570515249.0, 1570515310.0, 1570515371.0, 1570515432.0, 1570515493.0, 1570515554.0, 1570515615.0, 1570515676.0, 1570515737.0, 1570515798.0, 1570515859.0, 1570515920.0, 1570515981.0, 1570516042.0, 1570516103.0, 1570516164.0, 1570516225.0, 1570516286.0, 1570516347.0, 1570516408.0, 1570516469.0, 1570516530.0, 1570516591.0, 1570516652.0, 1570516713.0, 1570516774.0, 1570516835.0, 1570516896.0, 1570516957.0, 1570517018.0, 1570517079.0, 1570517140.0, 1570517201.0, 1570517262.0, 1570517323.0, 1570517384.0, 1570517445.0, 1570517506.0, 1570517567.0, 1570517628.0, 1570517689.0, 1570517750.0, 1570517811.0, 1570517872.0, 1570517933.0, 1570517994.0, 1570518055.0, 1570518116.0, 1570518177.0, 1570518238.0, 1570518299.0, 1570518360.0, 1570518421.0, 1570518482.0, 1570518543.0, 1570518604.0, 1570518665.0, 1570518726.0, 1570518787.0, 1570518848.0, 1570518909.0, 1570518970.0, 1570519031.0, 1570519092.0, 1570519153.0, 1570519214.0, 1570519275.0, 1570519336.0, 1570519397.0, 1570519458.0, 1570519519.0, 1570519580.0, 1570519641.0, 1570519702.0, 1570519763.0, 1570519824.0, 1570519885.0, 1570519946.0, 1570520007.0, 1570520068.0, 1570520129.0, 1570520190.0, 1570520251.0, 1570520312.0, 1570520373.0, 1570520434.0, 1570520495.0, 1570520556.0, 1570520617.0, 1570520678.0, 1570520739.0, 1570520800.0, 1570520861.0, 1570520922.0], y=[] (must be same and length>=2)
2019-10-08 07:49:07,328 | DEBUG | queue_monitor | pilot.util.auxiliary.4502122919 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=23459679"
2019-10-08 07:49:07,328 | INFO | queue_monitor | pilot.control.job.4502122919 | get_data_structure | total number of processed events: 200 (read)
2019-10-08 07:49:07,329 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4502122919/memory_monitor_summary.json (trf name=prmon)
2019-10-08 07:49:07,330 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1716584, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 434155920, 'wtime': 25328, 'rss': 9427708, 'write_bytes': 0, 'vmem': 14159480, 'read_bytes': 0, 'stime': 243, 'tx_bytes': 48615870, 'pss': 2702141, 'wchar': 0, 'rchar': 0, 'tx_packets': 352444, 'swap': 0, 'utime': 97348}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 17141, 'rx_packets': 67, 'vmem': 13700120, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 1919, 'pss': 2572367, 'wchar': 0, 'rchar': 0, 'tx_packets': 13, 'rss': 9096386}}
2019-10-08 07:49:07,330 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | ..............................
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . Timing measurements:
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . get job = 0 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . initial setup = 1 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . payload setup = 0 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . total setup = 1 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . stage-in = 0 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . payload execution = 25353 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . stage-out = 3 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | ..............................
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-08 07:49:07,332 | DEBUG | queue_monitor | pilot.util.auxiliary.4502122919 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4502122919/pandatracerlog.txt (ignoring)
2019-10-08 07:49:07,332 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4502122919/pilotlog.txt
2019-10-08 07:49:07,353 | WARNING | queue_monitor | pilot.util.auxiliary.4502122919 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-10-08 07:49:07,328 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570495607.0, 1570495668.0, 1570495729.0, 1570495790.0, 1570495851.0, 1570495912.0, 1570495973.0, 1570496034.0, 1570496095.0, 1570496156.0, 1570496217.0, 1570496278.0, 1570496339.0, 1570496400.0, 1570496461.0, 1570496522.0, 1570496583.0, 1570496644.0, 1570496705.0, 1570496766.0, 1570496827.0, 1570496888.0, 1570496949.0, 1570497010.0, 1570497071.0, 1570497132.0, 1570497193.0, 1570497254.0, 1570497315.0, 1570497376.0, 1570497437.0, 1570497498.0, 1570497559.0, 1570497620.0, 1570497681.0, 1570497742.0, 1570497803.0, 1570497864.0, 1570497925.0, 1570497986.0, 1570498047.0, 1570498108.0, 1570498169.0, 1570498230.0, 1570498291.0, 1570498352.0, 1570498413.0, 1570498474.0, 1570498535.0, 1570498596.0, 1570498657.0, 1570498718.0, 1570498779.0, 1570498840.0, 1570498901.0, 1570498962.0, 1570499023.0, 1570499084.0, 1570499145.0, 1570499206.0, 1570499267.0, 1570499328.0, 1570499389.0, 1570499450.0, 1570499511.0, 1570499572.0, 1570499633.0, 1570499694.0, 1570499755.0, 1570499816.0, 1570499877.0, 1570499938.0, 1570499999.0, 1570500060.0, 1570500121.0, 1570500182.0, 1570500243.0, 1570500304.0, 1570500365.0, 1570500426.0, 1570500487.0, 1570500548.0, 1570500609.0, 1570500670.0, 1570500731.0, 1570500792.0, 1570500853.0, 1570500914.0, 1570500975.0, 1570501036.0, 1570501097.0, 1570501158.0, 1570501219.0, 1570501280.0, 1570501341.0, 1570501402.0, 1570501463.0, 1570501524.0, 1570501585.0, 1570501646.0, 1570501707.0, 1570501768.0, 1570501829.0, 1570501890.0, 1570501951.0, 1570502012.0, 1570502073.0, 1570502134.0, 1570502195.0, 1570502256.0, 1570502317.0, 1570502378.0, 1570502439.0, 1570502500.0, 1570502561.0, 1570502622.0, 1570502683.0, 1570502744.0, 1570502805.0, 1570502866.0, 1570502927.0, 1570502988.0, 1570503049.0, 1570503110.0, 1570503171.0, 1570503232.0, 1570503293.0, 1570503354.0, 1570503415.0, 1570503476.0, 1570503537.0, 1570503598.0, 1570503659.0, 1570503720.0, 1570503781.0, 1570503842.0, 1570503903.0, 1570503964.0, 1570504025.0, 1570504086.0, 1570504147.0, 1570504208.0, 1570504269.0, 1570504330.0, 1570504391.0, 1570504452.0, 1570504513.0, 1570504574.0, 1570504635.0, 1570504696.0, 1570504757.0, 1570504818.0, 1570504879.0, 1570504940.0, 1570505001.0, 1570505062.0, 1570505123.0, 1570505184.0, 1570505245.0, 1570505306.0, 1570505367.0, 1570505428.0, 1570505489.0, 1570505550.0, 1570505611.0, 1570505672.0, 1570505733.0, 1570505794.0, 1570505855.0, 1570505916.0, 1570505977.0, 1570506038.0, 1570506099.0, 1570506160.0, 1570506221.0, 1570506282.0, 1570506343.0, 1570506404.0, 1570506465.0, 1570506526.0, 1570506587.0, 1570506648.0, 1570506709.0, 1570506770.0, 1570506831.0, 1570506892.0, 1570506953.0, 1570507014.0, 1570507075.0, 1570507136.0, 1570507197.0, 1570507258.0, 1570507319.0, 1570507380.0, 1570507441.0, 1570507502.0, 1570507563.0, 1570507624.0, 1570507685.0, 1570507746.0, 1570507807.0, 1570507868.0, 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1570520922.0], y=[] (must be same and length>=2)
2019-10-08 07:49:07,328 | DEBUG | queue_monitor | pilot.util.auxiliary.4502122919 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=23459679"
2019-10-08 07:49:07,328 | INFO | queue_monitor | pilot.control.job.4502122919 | get_data_structure | total number of processed events: 200 (read)
2019-10-08 07:49:07,329 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4502122919/memory_monitor_summary.json (trf name=prmon)
2019-10-08 07:49:07,330 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1716584, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 434155920, 'wtime': 25328, 'rss': 9427708, 'write_bytes': 0, 'vmem': 14159480, 'read_bytes': 0, 'stime': 243, 'tx_bytes': 48615870, 'pss': 2702141, 'wchar': 0, 'rchar': 0, 'tx_packets': 352444, 'swap': 0, 'utime': 97348}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 17141, 'rx_packets': 67, 'vmem': 13700120, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 1919, 'pss': 2572367, 'wchar': 0, 'rchar': 0, 'tx_packets': 13, 'rss': 9096386}}
2019-10-08 07:49:07,330 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | ..............................
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . Timing measurements:
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . get job = 0 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . initial setup = 1 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . payload setup = 0 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . total setup = 1 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . stage-in = 0 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . payload execution = 25353 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | . stage-out = 3 s
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | timing_report | ..............................
2019-10-08 07:49:07,331 | INFO | queue_monitor | pilot.util.auxiliary.4502122919 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-10-08 07:49:07,332 | DEBUG | queue_monitor | pilot.util.auxiliary.4502122919 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4502122919/pandatracerlog.txt (ignoring)
2019-10-08 07:49:07,332 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4502122919/pilotlog.txt
2019-10-08 07:49:07,355 | DEBUG | queue_monitor | pilot.control.job.4502122919 | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json
2019-10-08 07:49:07,355 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4502122919 was dequeued from the monitored payloads queue
2019-10-08 07:49:07,872 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report |
2019-10-08 07:49:07,872 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | job summary report
2019-10-08 07:49:07,872 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | --------------------------------------------------
2019-10-08 07:49:07,872 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | PanDA job id: 4502122919
2019-10-08 07:49:07,872 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | task id: 19000550
2019-10-08 07:49:07,872 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | errors: (none)
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | status: LOG_TRANSFER = DONE
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | pilot state: finished
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | transexitcode: 0
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | exeerrorcode: 0
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | exeerrordiag:
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | exitcode: 0
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | exitmsg: OK
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | cpuconsumptiontime: 96992 s
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | nevents: 200
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | neventsw: 0
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | pid: 30753
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | pgrp: 30753
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | corecount: 4
2019-10-08 07:49:07,873 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | event service: False
2019-10-08 07:49:07,874 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report | --------------------------------------------------
2019-10-08 07:49:07,874 | INFO | retrieve | pilot.util.auxiliary.4502122919 | make_job_report |
2019-10-08 07:49:07,874 | INFO | retrieve | pilot.control.job.4502122919 | has_job_completed | job 4502122919 has completed
2019-10-08 07:49:07,874 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-10-08 07:49:07,884 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4502122919
2019-10-08 07:49:08,884 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [30753]
2019-10-08 07:49:08,884 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 30753
2019-10-08 07:49:08,885 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-10-08 07:49:09,890 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-10-08 07:49:09,890 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=30753
2019-10-08 07:49:09,963 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [30753] (in reverse order)
2019-10-08 07:49:10,004 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-10-08 07:49:10,004 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-10-08 07:49:10,004 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-10-08 07:49:10,004 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-10-08 07:49:10,010 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 07:49:10,010 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) ***
2019-10-08 07:49:10,010 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 07:49:10,011 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
2019-10-08 07:49:10,011 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
2019-10-08 07:49:10,011 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
2019-10-08 07:49:10,080 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.6.1810 (Core)
Release: 7.6.1810
Codename: Core
2019-10-08 07:49:10,080 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
2019-10-08 07:49:10,583 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0
2019-10-08 07:49:10,603 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (21116223488 B)
2019-10-08 07:49:10,603 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-10-08 07:49:10,603 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-10-08 07:49:10,623 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-10-08 07:49:10,773 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads
2019-10-08 07:49:10,774 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140340249429824)>, <ExcThread(job, started 140340087797504)>, <ExcThread(copytool_in, started 140339490825984)>, <ExcThread(validate_pre, started 140339968980736)>, <ExcThread(queue_monitoring, started 140339516004096)>, <ExcThread(execute_payloads, started 140339482433280)>, <ExcThread(payload, started 140339977373440)>, <ExcThread(validate, started 140340079404800)>, <ExcThread(job_monitor, started 140339532789504)>, <ExcThread(validate_post, started 140339524396800)>, <ExcThread(data, started 140340002551552)>, <ExcThread(copytool_out, started 140339960588032)>, <ExcThread(queue_monitor, started 140339507611392)>, <ExcThread(create_data_payload, started 140339994158848)>, <ExcThread(failed_post, started 140339499218688)>]
2019-10-08 07:49:10,952 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-10-08 07:49:10,955 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-10-08 07:49:11,049 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-10-08 07:49:11,049 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-10-08 07:49:11,049 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-10-08 07:49:11,149 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-10-08 07:49:11,175 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads
2019-10-08 07:49:11,176 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-10-08 07:49:11,176 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140340249429824)>, <ExcThread(job, started 140340087797504)>, <ExcThread(copytool_in, started 140339490825984)>, <ExcThread(queue_monitoring, started 140339516004096)>, <ExcThread(payload, started 140339977373440)>, <ExcThread(job_monitor, started 140339532789504)>, <ExcThread(data, started 140340002551552)>, <ExcThread(copytool_out, started 140339960588032)>, <ExcThread(queue_monitor, started 140339507611392)>]
2019-10-08 07:49:11,176 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-10-08 07:49:11,180 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-10-08 07:49:11,180 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-10-08 07:49:11,378 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads
2019-10-08 07:49:11,378 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140340249429824)>, <ExcThread(copytool_in, started 140339490825984)>, <ExcThread(queue_monitoring, started 140339516004096)>, <ExcThread(payload, started 140339977373440)>, <ExcThread(job_monitor, started 140339532789504)>, <ExcThread(copytool_out, started 140339960588032)>, <ExcThread(queue_monitor, started 140339507611392)>]
2019-10-08 07:49:11,570 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-10-08 07:49:11,570 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-10-08 07:49:11,579 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads
2019-10-08 07:49:11,579 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140340249429824)>, <ExcThread(copytool_in, started 140339490825984)>, <ExcThread(queue_monitoring, started 140339516004096)>, <ExcThread(job_monitor, started 140339532789504)>, <ExcThread(copytool_out, started 140339960588032)>, <ExcThread(queue_monitor, started 140339507611392)>]
2019-10-08 07:49:11,629 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-10-08 07:49:11,801 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-10-08 07:49:11,872 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-10-08 07:49:11,872 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-10-08 07:49:11,881 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
2019-10-08 07:49:11,882 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140340249429824)>, <ExcThread(queue_monitoring, started 140339516004096)>, <ExcThread(job_monitor, started 140339532789504)>, <ExcThread(copytool_out, started 140339960588032)>]
2019-10-08 07:49:12,630 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-10-08 07:49:12,687 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-10-08 07:49:12,687 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140340249429824)>, <ExcThread(queue_monitoring, started 140339516004096)>, <ExcThread(job_monitor, started 140339532789504)>]
2019-10-08 07:49:13,303 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-10-08 07:49:16,304 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-10-08 07:49:16,313 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-10-08 07:49:16,313 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140340249429824)>, <ExcThread(job_monitor, started 140339532789504)>]
2019-10-08 07:49:30,310 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
2019-10-08 07:49:30,311 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-10-08 07:49:30,411 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-10-08 07:49:30,412 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-10-08 07:49:30,412 | INFO | MainThread | root | wrap_up | pilot has finished
2019-10-08 07:49:30 UTC [wrapper] ==== pilot stdout END ====
2019-10-08 07:49:30 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-10-08 07:49:30 UTC [wrapper] Pilot exit status: 0
2019-10-08 07:49:30 UTC [wrapper] STATUSCODE: 0
2019-10-08 07:49:30 UTC [wrapper] apfmon messages muted
---- find pandaIDs.out ----
total 56
-rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE
-rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN
-rw-------. 1 grid grid 11 Oct 8 02:46 pandaIDs.out
drwx------. 14 grid grid 216 Oct 8 02:46 pilot
-rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py
-rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION
-rw-------. 1 grid grid 2251 Jul 25 16:38 README.md
-rw-------. 1 grid grid 760 Aug 22 11:01 setup.py
-rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md
2019-10-08 07:49:30 UTC [wrapper] pandaIDs.out files:
-rw-------. 1 grid grid 11 Oct 8 02:46 /home/grid/slots/0/pilot2/pandaIDs.out
2019-10-08 07:49:30 UTC [wrapper] pandaIDs.out content:
4502122919
2019-10-08 07:49:30 UTC [wrapper] Test setup, not cleaning
2019-10-08 07:49:30 UTC [wrapper] ==== wrapper stdout END ====
2019-10-08 07:49:30 UTC [wrapper] ==== wrapper stderr END ====
2019-10-08 07:49:30 UTC [wrapper] wrapper wrapperexiting ec=0, duration=25412
2019-10-08 07:49:30 UTC [wrapper] apfmon messages muted
2019-10-08 09:49:34,282: ***************diag file************
2019-10-08 09:49:34,283: runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=25412.16s
KernelTime=721.28s
UserTime=96560.88s
CPUUsage=382%
MaxResidentMemory=1947312kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=25212
MinorPageFaults=23264315
Swaps=0
ForcedSwitches=12069702
WaitSwitches=12386577
Inputs=8370296
Outputs=1025872
SocketReceived=0
SocketSent=0
Signals=0
nodename=David_Cameron@dcameron04.cern.ch
exitcode=0
2019-10-08 09:49:34,290: ******************************WorkDir***********************
2019-10-08 09:49:34,291: total 233420
drwxrwx--x. 7 grid grid 4096 Oct 8 09:49 .
drwxr-x--x. 6 grid grid 42 Sep 26 14:51 ..
-rw-------. 1 grid grid 518 Oct 8 09:49 8lhKDmk2kbvnShfckohDCDFpABFKDmABFKDmWORXDmABFKDm2X2pLo.diag
-rw-------. 1 grid grid 7595462 Oct 8 02:46 agis_ddmendpoints.json
-rw-------. 1 grid grid 3936744 Oct 8 02:46 agis_schedconf.cvmfs.json
drwx------. 2 grid grid 6 Oct 8 02:45 .alrb
drwxr-xr-x. 3 grid grid 17 Oct 8 02:45 APPS
-rw-------. 1 grid grid 538 Oct 8 02:45 .asetup
-rw-------. 1 grid grid 4506 Oct 8 02:46 .asetup.save
drwx------. 2 grid grid 6 Oct 8 02:46 .asetup-sysbin_30754
-rw-rw-r--. 1 grid grid 0 Oct 8 02:45 boinc_lockfile
-rw-rw-r--. 1 grid grid 8192 Oct 8 09:49 boinc_mmap_file
-rw-rw-r--. 1 grid grid 537 Oct 8 09:39 boinc_task_state.xml
-rw-rw-r--. 1 grid grid 224553121 Oct 8 02:45 EVNT.18605582._000182.pool.root.1
-rw-------. 1 grid grid 69035 Oct 8 09:49 heartbeat.json
-rw-rw-r--. 1 grid grid 5865 Oct 8 02:45 init_data.xml
-rw-rw-r--. 1 grid grid 267507 Oct 8 02:45 input.tar.gz
-rw-rw-r--. 1 grid grid 112 Oct 8 02:45 job.xml
-rw-------. 1 grid grid 1225012 Oct 8 09:49 log.19000550._018059.job.log.1
-rw-------. 1 grid grid 916565 Oct 8 09:49 log.19000550._018059.job.log.tgz.1
-rw-------. 1 grid grid 795 Oct 8 09:48 memory_monitor_summary.json
-rw-------. 1 grid grid 463 Oct 8 09:49 output.list
-rw-------. 1 grid grid 2867 Oct 7 18:27 pandaJobData.out
drwx------. 3 grid grid 229 Oct 8 02:46 pilot2
-rw-r--r--. 1 grid grid 259319 Oct 7 18:27 pilot2.tar.gz
-rw-------. 1 grid grid 10568 Oct 8 09:49 pilotlog.txt
-rw-r--r--. 1 grid grid 4480 Oct 7 18:25 queuedata.json
-rw-rw-r--. 1 grid grid 815 Oct 8 02:45 RTE.tar.gz
-rwxr-xr-x. 1 grid grid 7950 Oct 8 02:45 run_atlas
-rwx------. 1 grid grid 12762 Oct 7 18:27 runpilot2-wrapper.sh
-rw-rw-r--. 1 grid grid 692 Oct 8 09:49 runtime_log
-rw-rw-r--. 1 grid grid 6899 Oct 8 09:49 runtime_log.err
drwxrwx--x. 2 grid grid 131 Oct 8 09:49 shared
-rw-rw-r--. 1 grid grid 8688 Oct 8 02:45 start_atlas.sh
-rw-rw-r--. 1 grid grid 40946 Oct 8 09:49 stderr.txt
-rw-rw-r--. 1 grid grid 107 Oct 8 02:45 wrapper_26015_x86_64-pc-linux-gnu
-rw-rw-r--. 1 grid grid 28 Oct 8 09:49 wrapper_checkpoint.txt
2019-10-08 09:49:34,291: running start_atlas return value is 0
2019-10-08 09:49:34,291: Parent exit 0
2019-10-08 09:49:34,293: child process exit 0
09:49:34 (23202): run_atlas exited; CPU time 96573.340099
09:49:34 (23202): called boinc_finish(0)
</stderr_txt>
]]>
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