Name | aHkKDmrq8avnShfckohDCDFpABFKDmABFKDmwfUWDmABFKDmADk1wn_1 |
Workunit | 1943363 |
Created | 7 Oct 2019, 17:15:57 UTC |
Sent | 8 Oct 2019, 0:45:50 UTC |
Report deadline | 15 Oct 2019, 0:45:50 UTC |
Received | 9 Oct 2019, 5:18:10 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 7 hours 13 min 2 sec |
CPU time | 1 days 3 hours 28 min 15 sec |
Validate state | Valid |
Credit | 699.88 |
Device peak FLOPS | 11.64 GFLOPS |
Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.80 GB |
Peak swap size | 2.59 GB |
Peak disk usage | 752.46 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 00:04:51 (8155): wrapper (7.7.26015): starting 00:04:51 (8155): wrapper: running run_atlas (--nthreads 4) 2019-10-09 00:04:51,279: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img 2019-10-09 00:04:51,279: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-10-09 00:04:51,280: THREADS=4 2019-10-09 00:04:51,282: Checking for CVMFS 2019-10-09 00:04:53,502: CVMFS is installed 2019-10-09 00:04:53,502: Checking Singularity... 2019-10-09 00:04:54,413: Singularity is installed, version singularity version 3.2.1-1 2019-10-09 00:04:54,413: Testing the function of Singularity... 2019-10-09 00:04:54,413: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname 2019-10-09 00:05:03,982: Singularity Works... 2019-10-09 00:05:03,982: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-10-09 00:05:04,435: copy /home/grid/slots/0/shared/input.tar.gz 2019-10-09 00:05:04,436: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-10-09 00:05:04,436: copy /home/grid/slots/0/shared/start_atlas.sh 2019-10-09 00:05:04,436: export ATHENA_PROC_NUMBER=4; 2019-10-09 00:05:04,471: start atlas job with PandaID=4497558344 2019-10-09 00:05:04,471: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-10-09 07:17:51,347: running cmd return value is 0 2019-10-09 07:17:51,352: Moving ./HITS.19000492._021206.pool.root.1 to shared/HITS.pool.root.1 2019-10-09 07:17:51,352: HITS result file: 2019-10-09 07:17:51,369: -rw-------. 1 grid grid 243966776 Oct 9 07:15 shared/HITS.pool.root.1 2019-10-09 07:17:51,370: *****************The last 200 lines of the pilot log****************** 2019-10-09 07:17:51,375: "total": { "cpuTime": 83, "wallTime": 159 }, "validation": { "cpuTime": 0, "wallTime": 0 }, "wallTime": 155 } }, "machine": { "cpu_family": "6", "linux_distribution": [ "CentOS Linux", "7.6.1810", "Core" ], "model": "61", "model_name": "Intel Core Processor (Broadwell, IBRS)", "node": "dcameron04.cern.ch", "platform": "Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core" }, "transform": { "cpuEfficiency": 0.9583, "cpuPWEfficiency": 0.9609, "cpuTime": 9, "cpuTimeTotal": 99004, "externalCpuTime": 203, "processedEvents": 200, "trfPredata": null, "wallTime": 25756 } } } 2019-10-09 05:16:46,605 | DEBUG | queue_monitor | pilot.util.auxiliary.4497558344 | update_server | xml:will send fileinfo 2019-10-09 05:16:46,605 | INFO | queue_monitor | pilot.control.job.4497558344 | send_state | pilot will not update the server (heartbeat message will be written to file) 2019-10-09 05:16:46,605 | INFO | queue_monitor | pilot.control.job.4497558344 | send_state | job 4497558344 has finished - writing final server update 2019-10-09 05:16:46,610 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570572379.0, 1570572440.0, 1570572501.0, 1570572562.0, 1570572623.0, 1570572684.0, 1570572745.0, 1570572806.0, 1570572867.0, 1570572928.0, 1570572989.0, 1570573050.0, 1570573111.0, 1570573172.0, 1570573233.0, 1570573294.0, 1570573355.0, 1570573416.0, 1570573477.0, 1570573538.0, 1570573599.0, 1570573660.0, 1570573721.0, 1570573782.0, 1570573843.0, 1570573904.0, 1570573965.0, 1570574026.0, 1570574087.0, 1570574148.0, 1570574209.0, 1570574270.0, 1570574331.0, 1570574392.0, 1570574453.0, 1570574514.0, 1570574575.0, 1570574636.0, 1570574697.0, 1570574758.0, 1570574819.0, 1570574880.0, 1570574941.0, 1570575002.0, 1570575063.0, 1570575124.0, 1570575185.0, 1570575246.0, 1570575307.0, 1570575368.0, 1570575429.0, 1570575490.0, 1570575551.0, 1570575612.0, 1570575673.0, 1570575734.0, 1570575795.0, 1570575856.0, 1570575917.0, 1570575978.0, 1570576039.0, 1570576100.0, 1570576161.0, 1570576222.0, 1570576283.0, 1570576344.0, 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1570589398.0, 1570589459.0, 1570589520.0, 1570589581.0, 1570589642.0, 1570589703.0, 1570589764.0, 1570589825.0, 1570589886.0, 1570589947.0, 1570590008.0, 1570590069.0, 1570590130.0, 1570590191.0, 1570590252.0, 1570590313.0, 1570590374.0, 1570590435.0, 1570590496.0, 1570590557.0, 1570590618.0, 1570590679.0, 1570590740.0, 1570590801.0, 1570590862.0, 1570590923.0, 1570590984.0, 1570591045.0, 1570591106.0, 1570591167.0, 1570591228.0, 1570591289.0, 1570591350.0, 1570591411.0, 1570591472.0, 1570591533.0, 1570591594.0, 1570591655.0, 1570591716.0, 1570591777.0, 1570591838.0, 1570591899.0, 1570591960.0, 1570592021.0, 1570592082.0, 1570592143.0, 1570592204.0, 1570592265.0, 1570592326.0, 1570592387.0, 1570592448.0, 1570592509.0, 1570592570.0, 1570592631.0, 1570592692.0, 1570592753.0, 1570592814.0, 1570592875.0, 1570592936.0, 1570592997.0, 1570593058.0, 1570593119.0, 1570593180.0, 1570593241.0, 1570593302.0, 1570593363.0, 1570593424.0, 1570593485.0, 1570593546.0, 1570593607.0, 1570593668.0, 1570593729.0, 1570593790.0, 1570593851.0, 1570593912.0, 1570593973.0, 1570594034.0, 1570594095.0, 1570594156.0, 1570594217.0, 1570594278.0, 1570594339.0, 1570594400.0, 1570594461.0, 1570594522.0, 1570594583.0, 1570594644.0, 1570594705.0, 1570594766.0, 1570594827.0, 1570594888.0, 1570594949.0, 1570595010.0, 1570595071.0, 1570595132.0, 1570595193.0, 1570595254.0, 1570595315.0, 1570595376.0, 1570595437.0, 1570595498.0, 1570595559.0, 1570595620.0, 1570595681.0, 1570595742.0, 1570595803.0, 1570595864.0, 1570595925.0, 1570595986.0, 1570596047.0, 1570596108.0, 1570596169.0, 1570596230.0, 1570596291.0, 1570596352.0, 1570596413.0, 1570596474.0, 1570596535.0, 1570596596.0, 1570596657.0, 1570596718.0, 1570596779.0, 1570596840.0, 1570596901.0, 1570596962.0, 1570597023.0, 1570597084.0, 1570597145.0, 1570597206.0, 1570597267.0, 1570597328.0, 1570597389.0, 1570597450.0, 1570597511.0, 1570597572.0, 1570597633.0, 1570597694.0, 1570597755.0, 1570597816.0, 1570597877.0, 1570597938.0, 1570597999.0, 1570598060.0, 1570598121.0, 1570598182.0], y=[] (must be same and length>=2) 2019-10-09 05:16:46,610 | DEBUG | queue_monitor | pilot.util.auxiliary.4497558344 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=2 nEvents=200 workDirSize=42294129" 2019-10-09 05:16:46,610 | INFO | queue_monitor | pilot.control.job.4497558344 | get_data_structure | total number of processed events: 200 (read) 2019-10-09 05:16:46,611 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4497558344/memory_monitor_summary.json (trf name=prmon) 2019-10-09 05:16:46,612 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1767038, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 470440085, 'wtime': 25816, 'rss': 9487376, 'write_bytes': 0, 'vmem': 14167020, 'read_bytes': 0, 'stime': 242, 'tx_bytes': 49429776, 'pss': 2697401, 'wchar': 0, 'rchar': 0, 'tx_packets': 356161, 'swap': 0, 'utime': 99694}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 18222, 'rx_packets': 68, 'vmem': 13715781, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 1914, 'pss': 2573163, 'wchar': 0, 'rchar': 0, 'tx_packets': 13, 'rss': 9106552}} 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | .............................. 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . Timing measurements: 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . get job = 0 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . initial setup = 1 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . payload setup = 0 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . total setup = 1 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . stage-in = 0 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . payload execution = 25839 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . stage-out = 3 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | .............................. 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-10-09 05:16:46,613 | DEBUG | queue_monitor | pilot.util.auxiliary.4497558344 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4497558344/pandatracerlog.txt (ignoring) 2019-10-09 05:16:46,614 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4497558344/pilotlog.txt 2019-10-09 05:16:46,637 | WARNING | queue_monitor | pilot.util.auxiliary.4497558344 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log: - Log from pilotlog.txt -2019-10-09 05:16:46,610 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570572379.0, 1570572440.0, 1570572501.0, 1570572562.0, 1570572623.0, 1570572684.0, 1570572745.0, 1570572806.0, 1570572867.0, 1570572928.0, 1570572989.0, 1570573050.0, 1570573111.0, 1570573172.0, 1570573233.0, 1570573294.0, 1570573355.0, 1570573416.0, 1570573477.0, 1570573538.0, 1570573599.0, 1570573660.0, 1570573721.0, 1570573782.0, 1570573843.0, 1570573904.0, 1570573965.0, 1570574026.0, 1570574087.0, 1570574148.0, 1570574209.0, 1570574270.0, 1570574331.0, 1570574392.0, 1570574453.0, 1570574514.0, 1570574575.0, 1570574636.0, 1570574697.0, 1570574758.0, 1570574819.0, 1570574880.0, 1570574941.0, 1570575002.0, 1570575063.0, 1570575124.0, 1570575185.0, 1570575246.0, 1570575307.0, 1570575368.0, 1570575429.0, 1570575490.0, 1570575551.0, 1570575612.0, 1570575673.0, 1570575734.0, 1570575795.0, 1570575856.0, 1570575917.0, 1570575978.0, 1570576039.0, 1570576100.0, 1570576161.0, 1570576222.0, 1570576283.0, 1570576344.0, 1570576405.0, 1570576466.0, 1570576527.0, 1570576588.0, 1570576649.0, 1570576710.0, 1570576771.0, 1570576832.0, 1570576893.0, 1570576954.0, 1570577015.0, 1570577076.0, 1570577137.0, 1570577198.0, 1570577259.0, 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1570581651.0, 1570581712.0, 1570581773.0, 1570581834.0, 1570581895.0, 1570581956.0, 1570582017.0, 1570582078.0, 1570582139.0, 1570582200.0, 1570582261.0, 1570582322.0, 1570582383.0, 1570582444.0, 1570582505.0, 1570582566.0, 1570582627.0, 1570582688.0, 1570582749.0, 1570582810.0, 1570582871.0, 1570582932.0, 1570582993.0, 1570583054.0, 1570583115.0, 1570583176.0, 1570583237.0, 1570583298.0, 1570583359.0, 1570583420.0, 1570583481.0, 1570583542.0, 1570583603.0, 1570583664.0, 1570583725.0, 1570583786.0, 1570583847.0, 1570583908.0, 1570583969.0, 1570584030.0, 1570584091.0, 1570584152.0, 1570584213.0, 1570584274.0, 1570584335.0, 1570584396.0, 1570584457.0, 1570584518.0, 1570584579.0, 1570584640.0, 1570584701.0, 1570584762.0, 1570584823.0, 1570584884.0, 1570584945.0, 1570585006.0, 1570585067.0, 1570585128.0, 1570585189.0, 1570585250.0, 1570585311.0, 1570585372.0, 1570585433.0, 1570585494.0, 1570585555.0, 1570585616.0, 1570585677.0, 1570585738.0, 1570585799.0, 1570585860.0, 1570585921.0, 1570585982.0, 1570586043.0, 1570586104.0, 1570586165.0, 1570586226.0, 1570586287.0, 1570586348.0, 1570586409.0, 1570586470.0, 1570586531.0, 1570586592.0, 1570586653.0, 1570586714.0, 1570586775.0, 1570586836.0, 1570586897.0, 1570586958.0, 1570587019.0, 1570587080.0, 1570587141.0, 1570587202.0, 1570587263.0, 1570587324.0, 1570587385.0, 1570587446.0, 1570587507.0, 1570587568.0, 1570587629.0, 1570587690.0, 1570587751.0, 1570587812.0, 1570587873.0, 1570587934.0, 1570587995.0, 1570588056.0, 1570588117.0, 1570588178.0, 1570588239.0, 1570588300.0, 1570588361.0, 1570588422.0, 1570588483.0, 1570588544.0, 1570588605.0, 1570588666.0, 1570588727.0, 1570588788.0, 1570588849.0, 1570588910.0, 1570588971.0, 1570589032.0, 1570589093.0, 1570589154.0, 1570589215.0, 1570589276.0, 1570589337.0, 1570589398.0, 1570589459.0, 1570589520.0, 1570589581.0, 1570589642.0, 1570589703.0, 1570589764.0, 1570589825.0, 1570589886.0, 1570589947.0, 1570590008.0, 1570590069.0, 1570590130.0, 1570590191.0, 1570590252.0, 1570590313.0, 1570590374.0, 1570590435.0, 1570590496.0, 1570590557.0, 1570590618.0, 1570590679.0, 1570590740.0, 1570590801.0, 1570590862.0, 1570590923.0, 1570590984.0, 1570591045.0, 1570591106.0, 1570591167.0, 1570591228.0, 1570591289.0, 1570591350.0, 1570591411.0, 1570591472.0, 1570591533.0, 1570591594.0, 1570591655.0, 1570591716.0, 1570591777.0, 1570591838.0, 1570591899.0, 1570591960.0, 1570592021.0, 1570592082.0, 1570592143.0, 1570592204.0, 1570592265.0, 1570592326.0, 1570592387.0, 1570592448.0, 1570592509.0, 1570592570.0, 1570592631.0, 1570592692.0, 1570592753.0, 1570592814.0, 1570592875.0, 1570592936.0, 1570592997.0, 1570593058.0, 1570593119.0, 1570593180.0, 1570593241.0, 1570593302.0, 1570593363.0, 1570593424.0, 1570593485.0, 1570593546.0, 1570593607.0, 1570593668.0, 1570593729.0, 1570593790.0, 1570593851.0, 1570593912.0, 1570593973.0, 1570594034.0, 1570594095.0, 1570594156.0, 1570594217.0, 1570594278.0, 1570594339.0, 1570594400.0, 1570594461.0, 1570594522.0, 1570594583.0, 1570594644.0, 1570594705.0, 1570594766.0, 1570594827.0, 1570594888.0, 1570594949.0, 1570595010.0, 1570595071.0, 1570595132.0, 1570595193.0, 1570595254.0, 1570595315.0, 1570595376.0, 1570595437.0, 1570595498.0, 1570595559.0, 1570595620.0, 1570595681.0, 1570595742.0, 1570595803.0, 1570595864.0, 1570595925.0, 1570595986.0, 1570596047.0, 1570596108.0, 1570596169.0, 1570596230.0, 1570596291.0, 1570596352.0, 1570596413.0, 1570596474.0, 1570596535.0, 1570596596.0, 1570596657.0, 1570596718.0, 1570596779.0, 1570596840.0, 1570596901.0, 1570596962.0, 1570597023.0, 1570597084.0, 1570597145.0, 1570597206.0, 1570597267.0, 1570597328.0, 1570597389.0, 1570597450.0, 1570597511.0, 1570597572.0, 1570597633.0, 1570597694.0, 1570597755.0, 1570597816.0, 1570597877.0, 1570597938.0, 1570597999.0, 1570598060.0, 1570598121.0, 1570598182.0], y=[] (must be same and length>=2) 2019-10-09 05:16:46,610 | DEBUG | queue_monitor | pilot.util.auxiliary.4497558344 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=2 nEvents=200 workDirSize=42294129" 2019-10-09 05:16:46,610 | INFO | queue_monitor | pilot.control.job.4497558344 | get_data_structure | total number of processed events: 200 (read) 2019-10-09 05:16:46,611 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4497558344/memory_monitor_summary.json (trf name=prmon) 2019-10-09 05:16:46,612 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1767038, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 470440085, 'wtime': 25816, 'rss': 9487376, 'write_bytes': 0, 'vmem': 14167020, 'read_bytes': 0, 'stime': 242, 'tx_bytes': 49429776, 'pss': 2697401, 'wchar': 0, 'rchar': 0, 'tx_packets': 356161, 'swap': 0, 'utime': 99694}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 18222, 'rx_packets': 68, 'vmem': 13715781, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 1914, 'pss': 2573163, 'wchar': 0, 'rchar': 0, 'tx_packets': 13, 'rss': 9106552}} 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | .............................. 2019-10-09 05:16:46,612 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . Timing measurements: 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . get job = 0 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . initial setup = 1 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . payload setup = 0 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . total setup = 1 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . stage-in = 0 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . payload execution = 25839 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | . stage-out = 3 s 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | timing_report | .............................. 2019-10-09 05:16:46,613 | INFO | queue_monitor | pilot.util.auxiliary.4497558344 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-10-09 05:16:46,613 | DEBUG | queue_monitor | pilot.util.auxiliary.4497558344 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4497558344/pandatracerlog.txt (ignoring) 2019-10-09 05:16:46,614 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4497558344/pilotlog.txt 2019-10-09 05:16:46,638 | DEBUG | queue_monitor | pilot.control.job.4497558344 | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json 2019-10-09 05:16:46,638 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4497558344 was dequeued from the monitored payloads queue 2019-10-09 05:16:47,198 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | job summary report 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | -------------------------------------------------- 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | PanDA job id: 4497558344 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | task id: 19000492 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | errors: (none) 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | status: LOG_TRANSFER = DONE 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | pilot state: finished 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | transexitcode: 0 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | exeerrorcode: 0 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | exeerrordiag: 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | exitcode: 0 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | exitmsg: OK 2019-10-09 05:16:47,199 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | cpuconsumptiontime: 99320 s 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | nevents: 200 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | neventsw: 0 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | pid: 15333 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | pgrp: 15333 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | corecount: 4 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | event service: False 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | -------------------------------------------------- 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.auxiliary.4497558344 | make_job_report | 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.control.job.4497558344 | has_job_completed | job 4497558344 has completed 2019-10-09 05:16:47,200 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-10-09 05:16:47,212 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4497558344 2019-10-09 05:16:48,217 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [15333] 2019-10-09 05:16:48,218 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 15333 2019-10-09 05:16:48,218 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-10-09 05:16:49,222 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-10-09 05:16:49,222 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=15333 2019-10-09 05:16:49,300 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [15333] (in reverse order) 2019-10-09 05:16:49,340 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-10-09 05:16:49,341 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-10-09 05:16:49,341 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-10-09 05:16:49,341 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-10-09 05:16:49,346 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-09 05:16:49,346 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) *** 2019-10-09 05:16:49,346 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-09 05:16:49,346 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-10-09 05:16:49,347 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM 2019-10-09 05:16:49,347 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-10-09 05:16:49,414 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :core-4.1-amd64:core-4.1-noarch Distributor ID: CentOS Description: CentOS Linux release 7.6.1810 (Core) Release: 7.6.1810 Codename: Core 2019-10-09 05:16:49,415 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-09 05:16:49,917 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-10-09 05:16:49,938 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (19808649216 B) 2019-10-09 05:16:49,938 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-10-09 05:16:49,938 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-10-09 05:16:49,942 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-10-09 05:16:49,961 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads 2019-10-09 05:16:49,961 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139910189745984)>, <ExcThread(job, started 139910028093184)>, <ExcThread(payload, started 139910002915072)>, <ExcThread(validate_post, started 139909482403584)>, <ExcThread(validate, started 139910011307776)>, <ExcThread(execute_payloads, started 139908953925376)>, <ExcThread(data, started 139910019700480)>, <ExcThread(queue_monitor, started 139908962318080)>, <ExcThread(failed_post, started 139909465618176)>, <ExcThread(queue_monitoring, started 139909490796288)>, <ExcThread(job_monitor, started 139909457225472)>, <ExcThread(create_data_payload, started 139909499188992)>, <ExcThread(copytool_in, started 139909448832768)>, <ExcThread(validate_pre, started 139909986129664)>, <ExcThread(copytool_out, started 139909994522368)>] 2019-10-09 05:16:50,073 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-10-09 05:16:50,111 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-10-09 05:16:50,111 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-10-09 05:16:50,115 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-10-09 05:16:50,156 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-10-09 05:16:50,157 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-10-09 05:16:50,221 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-10-09 05:16:50,258 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-10-09 05:16:50,259 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139910189745984)>, <ExcThread(payload, started 139910002915072)>, <ExcThread(validate, started 139910011307776)>, <ExcThread(queue_monitor, started 139908962318080)>, <ExcThread(failed_post, started 139909465618176)>, <ExcThread(queue_monitoring, started 139909490796288)>, <ExcThread(job_monitor, started 139909457225472)>, <ExcThread(create_data_payload, started 139909499188992)>, <ExcThread(copytool_in, started 139909448832768)>, <ExcThread(validate_pre, started 139909986129664)>, <ExcThread(copytool_out, started 139909994522368)>] 2019-10-09 05:16:50,330 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-10-09 05:16:50,331 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-10-09 05:16:50,460 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-10-09 05:16:50,460 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-10-09 05:16:50,460 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-10-09 05:16:50,461 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139910189745984)>, <ExcThread(validate, started 139910011307776)>, <ExcThread(queue_monitor, started 139908962318080)>, <ExcThread(failed_post, started 139909465618176)>, <ExcThread(queue_monitoring, started 139909490796288)>, <ExcThread(job_monitor, started 139909457225472)>, <ExcThread(create_data_payload, started 139909499188992)>, <ExcThread(copytool_out, started 139909994522368)>] 2019-10-09 05:16:50,732 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-10-09 05:16:50,763 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-10-09 05:16:50,763 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139910189745984)>, <ExcThread(validate, started 139910011307776)>, <ExcThread(queue_monitor, started 139908962318080)>, <ExcThread(queue_monitoring, started 139909490796288)>, <ExcThread(job_monitor, started 139909457225472)>, <ExcThread(create_data_payload, started 139909499188992)>, <ExcThread(copytool_out, started 139909994522368)>] 2019-10-09 05:16:51,073 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-10-09 05:16:51,116 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-10-09 05:16:51,162 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-10-09 05:16:51,162 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-10-09 05:16:51,165 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-10-09 05:16:51,166 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139910189745984)>, <ExcThread(queue_monitoring, started 139909490796288)>, <ExcThread(job_monitor, started 139909457225472)>, <ExcThread(create_data_payload, started 139909499188992)>] 2019-10-09 05:16:51,180 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-10-09 05:16:51,267 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-10-09 05:16:51,267 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139910189745984)>, <ExcThread(queue_monitoring, started 139909490796288)>, <ExcThread(job_monitor, started 139909457225472)>] 2019-10-09 05:16:52,569 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-10-09 05:16:55,570 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-10-09 05:16:55,596 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-10-09 05:16:55,596 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139910189745984)>, <ExcThread(job_monitor, started 139909457225472)>] 2019-10-09 05:17:47,149 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-10-09 05:17:47,150 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-10-09 05:17:47,153 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-10-09 05:17:47,153 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-10-09 05:17:47,153 | INFO | MainThread | root | wrap_up | pilot has finished 2019-10-09 05:17:47 UTC [wrapper] ==== pilot stdout END ==== 2019-10-09 05:17:47 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-10-09 05:17:47 UTC [wrapper] Pilot exit status: 0 2019-10-09 05:17:47 UTC [wrapper] STATUSCODE: 0 2019-10-09 05:17:47 UTC [wrapper] apfmon messages muted ---- find pandaIDs.out ---- total 56 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE -rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN -rw-------. 1 grid grid 11 Oct 9 00:05 pandaIDs.out drwx------. 14 grid grid 216 Oct 9 00:05 pilot -rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py -rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 760 Aug 22 11:01 setup.py -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-10-09 05:17:47 UTC [wrapper] pandaIDs.out files: -rw-------. 1 grid grid 11 Oct 9 00:05 /home/grid/slots/0/pilot2/pandaIDs.out 2019-10-09 05:17:47 UTC [wrapper] pandaIDs.out content: 4497558344 2019-10-09 05:17:47 UTC [wrapper] Test setup, not cleaning 2019-10-09 05:17:47 UTC [wrapper] ==== wrapper stdout END ==== 2019-10-09 05:17:47 UTC [wrapper] ==== wrapper stderr END ==== 2019-10-09 05:17:47 UTC [wrapper] wrapper wrapperexiting ec=0, duration=25957 2019-10-09 05:17:47 UTC [wrapper] apfmon messages muted 2019-10-09 07:17:51,380: ***************diag file************ 2019-10-09 07:17:51,380: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=25957.00s KernelTime=737.72s UserTime=98882.58s CPUUsage=383% MaxResidentMemory=1947120kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=26629 MinorPageFaults=23422213 Swaps=0 ForcedSwitches=12394497 WaitSwitches=12588780 Inputs=8832912 Outputs=1037408 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-10-09 07:17:51,386: ******************************WorkDir*********************** 2019-10-09 07:17:51,386: total 270220 drwxrwx--x. 7 grid grid 4096 Oct 9 07:17 . drwxr-x--x. 6 grid grid 42 Sep 26 14:51 .. -rw-------. 1 grid grid 7614407 Oct 9 00:05 agis_ddmendpoints.json -rw-------. 1 grid grid 3936210 Oct 9 00:05 agis_schedconf.cvmfs.json -rw-------. 1 grid grid 518 Oct 9 07:17 aHkKDmrq8avnShfckohDCDFpABFKDmABFKDmwfUWDmABFKDmADk1wn.diag drwx------. 2 grid grid 6 Oct 9 00:05 .alrb drwxr-xr-x. 3 grid grid 17 Oct 9 00:05 APPS -rw-------. 1 grid grid 538 Oct 9 00:05 .asetup -rw-------. 1 grid grid 4506 Oct 9 00:06 .asetup.save drwx------. 2 grid grid 6 Oct 9 00:06 .asetup-sysbin_15334 -rw-rw-r--. 1 grid grid 0 Oct 9 00:04 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Oct 9 07:17 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Oct 9 07:05 boinc_task_state.xml -rw-rw-r--. 1 grid grid 262214799 Oct 9 00:05 EVNT.18605549._000419.pool.root.1 -rw-------. 1 grid grid 55055 Oct 9 07:16 heartbeat.json -rw-rw-r--. 1 grid grid 5865 Oct 9 00:04 init_data.xml -rw-rw-r--. 1 grid grid 267507 Oct 9 00:05 input.tar.gz -rw-rw-r--. 1 grid grid 112 Oct 9 00:04 job.xml -rw-------. 1 grid grid 1244005 Oct 9 07:17 log.19000492._021206.job.log.1 -rw-------. 1 grid grid 913235 Oct 9 07:16 log.19000492._021206.job.log.tgz.1 -rw-------. 1 grid grid 795 Oct 9 07:16 memory_monitor_summary.json -rw-------. 1 grid grid 463 Oct 9 07:17 output.list -rw-------. 1 grid grid 2842 Oct 6 01:41 pandaJobData.out drwx------. 3 grid grid 229 Oct 9 00:05 pilot2 -rw-r--r--. 1 grid grid 259319 Oct 6 01:25 pilot2.tar.gz -rw-------. 1 grid grid 10815 Oct 9 07:17 pilotlog.txt -rw-r--r--. 1 grid grid 4480 Oct 6 01:40 queuedata.json -rw-rw-r--. 1 grid grid 815 Oct 9 00:05 RTE.tar.gz -rwxr-xr-x. 1 grid grid 7950 Oct 9 00:04 run_atlas -rwx------. 1 grid grid 12762 Oct 6 01:41 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Oct 9 07:17 runtime_log -rw-rw-r--. 1 grid grid 6899 Oct 9 07:17 runtime_log.err drwxrwx--x. 2 grid grid 131 Oct 9 07:17 shared -rw-rw-r--. 1 grid grid 8688 Oct 9 00:05 start_atlas.sh -rw-rw-r--. 1 grid grid 41415 Oct 9 07:17 stderr.txt -rw-rw-r--. 1 grid grid 107 Oct 9 00:04 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Oct 9 07:17 wrapper_checkpoint.txt 2019-10-09 07:17:51,386: running start_atlas return value is 0 2019-10-09 07:17:51,387: Parent exit 0 2019-10-09 07:17:51,389: child process exit 0 07:17:51 (8155): run_atlas exited; CPU time 98895.272396 07:17:51 (8155): called boinc_finish(0) </stderr_txt> ]]>
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