Name | MZDLDm0qqbvnShfckohDCDFpABFKDmABFKDmMIaXDmABFKDmCI71Bn_1 |
Workunit | 1943717 |
Created | 8 Oct 2019, 4:50:33 UTC |
Sent | 8 Oct 2019, 8:49:58 UTC |
Report deadline | 15 Oct 2019, 8:49:58 UTC |
Received | 9 Oct 2019, 12:36:49 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3911 |
Run time | 7 hours 18 min 41 sec |
CPU time | 1 days 3 hours 48 min 43 sec |
Validate state | Valid |
Credit | 708.99 |
Device peak FLOPS | 11.64 GFLOPS |
Application version | ATLAS Simulation v0.74 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.82 GB |
Peak swap size | 3.63 GB |
Peak disk usage | 997.69 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 07:17:55 (29305): wrapper (7.7.26015): starting 07:17:55 (29305): wrapper: running run_atlas (--nthreads 4) 2019-10-09 07:17:55,467: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img 2019-10-09 07:17:55,467: sys.argv = ['run_atlas', '--nthreads', '4'] 2019-10-09 07:17:55,468: THREADS=4 2019-10-09 07:17:55,470: Checking for CVMFS 2019-10-09 07:17:57,709: CVMFS is installed 2019-10-09 07:17:57,709: Checking Singularity... 2019-10-09 07:17:58,083: Singularity is installed, version singularity version 3.2.1-1 2019-10-09 07:17:58,083: Testing the function of Singularity... 2019-10-09 07:17:58,083: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname 2019-10-09 07:18:07,698: Singularity Works... 2019-10-09 07:18:07,699: copy /home/grid/slots/0/shared/ATLAS.root_0 2019-10-09 07:18:08,073: copy /home/grid/slots/0/shared/input.tar.gz 2019-10-09 07:18:08,074: copy /home/grid/slots/0/shared/RTE.tar.gz 2019-10-09 07:18:08,074: copy /home/grid/slots/0/shared/start_atlas.sh 2019-10-09 07:18:08,075: export ATHENA_PROC_NUMBER=4; 2019-10-09 07:18:08,105: start atlas job with PandaID=4502189035 2019-10-09 07:18:08,105: cmd = singularity exec --pwd /home/grid/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-10-09 14:36:33,075: running cmd return value is 0 2019-10-09 14:36:33,081: Moving ./HITS.19056279._005620.pool.root.1 to shared/HITS.pool.root.1 2019-10-09 14:36:33,081: HITS result file: 2019-10-09 14:36:33,100: -rw-------. 1 grid grid 250322951 Oct 9 14:34 shared/HITS.pool.root.1 2019-10-09 14:36:33,100: *****************The last 200 lines of the pilot log****************** 2019-10-09 14:36:33,112: "wallTime": 0 }, "wallTime": 171 } }, "machine": { "cpu_family": "6", "linux_distribution": [ "CentOS Linux", "7.6.1810", "Core" ], "model": "61", "model_name": "Intel Core Processor (Broadwell, IBRS)", "node": "dcameron04.cern.ch", "platform": "Linux-3.10.0-957.el7.x86_64-x86_64-with-centos-7.6.1810-Core" }, "transform": { "cpuEfficiency": 0.9565, "cpuPWEfficiency": 0.9593, "cpuTime": 9, "cpuTimeTotal": 100250, "externalCpuTime": 214, "processedEvents": 200, "trfPredata": null, "wallTime": 26126 } } } 2019-10-09 12:35:32,124 | DEBUG | queue_monitor | pilot.util.auxiliary.4502189035 | update_server | xml:will send fileinfo 2019-10-09 12:35:32,124 | INFO | queue_monitor | pilot.control.job.4502189035 | send_state | pilot will not update the server (heartbeat message will be written to file) 2019-10-09 12:35:32,124 | INFO | queue_monitor | pilot.control.job.4502189035 | send_state | job 4502189035 has finished - writing final server update 2019-10-09 12:35:32,129 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570598341.0, 1570598402.0, 1570598463.0, 1570598524.0, 1570598585.0, 1570598646.0, 1570598707.0, 1570598768.0, 1570598829.0, 1570598890.0, 1570598951.0, 1570599012.0, 1570599073.0, 1570599134.0, 1570599195.0, 1570599256.0, 1570599317.0, 1570599378.0, 1570599439.0, 1570599500.0, 1570599561.0, 1570599622.0, 1570599683.0, 1570599744.0, 1570599805.0, 1570599866.0, 1570599927.0, 1570599988.0, 1570600049.0, 1570600110.0, 1570600171.0, 1570600232.0, 1570600293.0, 1570600354.0, 1570600415.0, 1570600476.0, 1570600537.0, 1570600598.0, 1570600659.0, 1570600720.0, 1570600781.0, 1570600842.0, 1570600903.0, 1570600964.0, 1570601025.0, 1570601086.0, 1570601147.0, 1570601208.0, 1570601269.0, 1570601330.0, 1570601391.0, 1570601452.0, 1570601513.0, 1570601574.0, 1570601635.0, 1570601696.0, 1570601757.0, 1570601818.0, 1570601879.0, 1570601940.0, 1570602001.0, 1570602062.0, 1570602123.0, 1570602184.0, 1570602245.0, 1570602306.0, 1570602367.0, 1570602428.0, 1570602489.0, 1570602550.0, 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1570619935.0, 1570619996.0, 1570620057.0, 1570620118.0, 1570620179.0, 1570620240.0, 1570620301.0, 1570620362.0, 1570620423.0, 1570620484.0, 1570620545.0, 1570620606.0, 1570620667.0, 1570620728.0, 1570620789.0, 1570620850.0, 1570620911.0, 1570620972.0, 1570621033.0, 1570621094.0, 1570621155.0, 1570621216.0, 1570621277.0, 1570621338.0, 1570621399.0, 1570621460.0, 1570621521.0, 1570621582.0, 1570621643.0, 1570621704.0, 1570621765.0, 1570621826.0, 1570621887.0, 1570621948.0, 1570622009.0, 1570622070.0, 1570622131.0, 1570622192.0, 1570622253.0, 1570622314.0, 1570622375.0, 1570622436.0, 1570622497.0, 1570622558.0, 1570622619.0, 1570622680.0, 1570622741.0, 1570622802.0, 1570622863.0, 1570622924.0, 1570622985.0, 1570623046.0, 1570623107.0, 1570623168.0, 1570623229.0, 1570623290.0, 1570623351.0, 1570623412.0, 1570623473.0, 1570623534.0, 1570623595.0, 1570623656.0, 1570623717.0, 1570623778.0, 1570623839.0, 1570623900.0, 1570623961.0, 1570624022.0, 1570624083.0, 1570624144.0, 1570624205.0, 1570624266.0, 1570624327.0, 1570624388.0, 1570624449.0, 1570624510.0], y=[] (must be same and length>=2) 2019-10-09 12:35:32,129 | DEBUG | queue_monitor | pilot.util.auxiliary.4502189035 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=7534916" 2019-10-09 12:35:32,130 | INFO | queue_monitor | pilot.control.job.4502189035 | get_data_structure | total number of processed events: 200 (read) 2019-10-09 12:35:32,131 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4502189035/memory_monitor_summary.json (trf name=prmon) 2019-10-09 12:35:32,132 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1813919, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 421633356, 'wtime': 26182, 'rss': 9488808, 'write_bytes': 0, 'vmem': 14180152, 'read_bytes': 0, 'stime': 254, 'tx_bytes': 49892134, 'pss': 2710767, 'wchar': 0, 'rchar': 0, 'tx_packets': 357927, 'swap': 0, 'utime': 100934}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 16103, 'rx_packets': 69, 'vmem': 13706009, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 1905, 'pss': 2586054, 'wchar': 0, 'rchar': 0, 'tx_packets': 13, 'rss': 9104189}} 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | .............................. 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . Timing measurements: 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . get job = 0 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . initial setup = 1 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . payload setup = 0 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . total setup = 1 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . stage-in = 0 s 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . payload execution = 26203 s 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . stage-out = 3 s 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | .............................. 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-10-09 12:35:32,133 | DEBUG | queue_monitor | pilot.util.auxiliary.4502189035 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4502189035/pandatracerlog.txt (ignoring) 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4502189035/pilotlog.txt 2019-10-09 12:35:32,164 | WARNING | queue_monitor | pilot.util.auxiliary.4502189035 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log: - Log from pilotlog.txt -2019-10-09 12:35:32,129 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1570598341.0, 1570598402.0, 1570598463.0, 1570598524.0, 1570598585.0, 1570598646.0, 1570598707.0, 1570598768.0, 1570598829.0, 1570598890.0, 1570598951.0, 1570599012.0, 1570599073.0, 1570599134.0, 1570599195.0, 1570599256.0, 1570599317.0, 1570599378.0, 1570599439.0, 1570599500.0, 1570599561.0, 1570599622.0, 1570599683.0, 1570599744.0, 1570599805.0, 1570599866.0, 1570599927.0, 1570599988.0, 1570600049.0, 1570600110.0, 1570600171.0, 1570600232.0, 1570600293.0, 1570600354.0, 1570600415.0, 1570600476.0, 1570600537.0, 1570600598.0, 1570600659.0, 1570600720.0, 1570600781.0, 1570600842.0, 1570600903.0, 1570600964.0, 1570601025.0, 1570601086.0, 1570601147.0, 1570601208.0, 1570601269.0, 1570601330.0, 1570601391.0, 1570601452.0, 1570601513.0, 1570601574.0, 1570601635.0, 1570601696.0, 1570601757.0, 1570601818.0, 1570601879.0, 1570601940.0, 1570602001.0, 1570602062.0, 1570602123.0, 1570602184.0, 1570602245.0, 1570602306.0, 1570602367.0, 1570602428.0, 1570602489.0, 1570602550.0, 1570602611.0, 1570602672.0, 1570602733.0, 1570602794.0, 1570602855.0, 1570602916.0, 1570602977.0, 1570603038.0, 1570603099.0, 1570603160.0, 1570603221.0, 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1570616275.0, 1570616336.0, 1570616397.0, 1570616458.0, 1570616519.0, 1570616580.0, 1570616641.0, 1570616702.0, 1570616763.0, 1570616824.0, 1570616885.0, 1570616946.0, 1570617007.0, 1570617068.0, 1570617129.0, 1570617190.0, 1570617251.0, 1570617312.0, 1570617373.0, 1570617434.0, 1570617495.0, 1570617556.0, 1570617617.0, 1570617678.0, 1570617739.0, 1570617800.0, 1570617861.0, 1570617922.0, 1570617983.0, 1570618044.0, 1570618105.0, 1570618166.0, 1570618227.0, 1570618288.0, 1570618349.0, 1570618410.0, 1570618471.0, 1570618532.0, 1570618593.0, 1570618654.0, 1570618715.0, 1570618776.0, 1570618837.0, 1570618898.0, 1570618959.0, 1570619020.0, 1570619081.0, 1570619142.0, 1570619203.0, 1570619264.0, 1570619325.0, 1570619386.0, 1570619447.0, 1570619508.0, 1570619569.0, 1570619630.0, 1570619691.0, 1570619752.0, 1570619813.0, 1570619874.0, 1570619935.0, 1570619996.0, 1570620057.0, 1570620118.0, 1570620179.0, 1570620240.0, 1570620301.0, 1570620362.0, 1570620423.0, 1570620484.0, 1570620545.0, 1570620606.0, 1570620667.0, 1570620728.0, 1570620789.0, 1570620850.0, 1570620911.0, 1570620972.0, 1570621033.0, 1570621094.0, 1570621155.0, 1570621216.0, 1570621277.0, 1570621338.0, 1570621399.0, 1570621460.0, 1570621521.0, 1570621582.0, 1570621643.0, 1570621704.0, 1570621765.0, 1570621826.0, 1570621887.0, 1570621948.0, 1570622009.0, 1570622070.0, 1570622131.0, 1570622192.0, 1570622253.0, 1570622314.0, 1570622375.0, 1570622436.0, 1570622497.0, 1570622558.0, 1570622619.0, 1570622680.0, 1570622741.0, 1570622802.0, 1570622863.0, 1570622924.0, 1570622985.0, 1570623046.0, 1570623107.0, 1570623168.0, 1570623229.0, 1570623290.0, 1570623351.0, 1570623412.0, 1570623473.0, 1570623534.0, 1570623595.0, 1570623656.0, 1570623717.0, 1570623778.0, 1570623839.0, 1570623900.0, 1570623961.0, 1570624022.0, 1570624083.0, 1570624144.0, 1570624205.0, 1570624266.0, 1570624327.0, 1570624388.0, 1570624449.0, 1570624510.0], y=[] (must be same and length>=2) 2019-10-09 12:35:32,129 | DEBUG | queue_monitor | pilot.util.auxiliary.4502189035 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=200 workDirSize=7534916" 2019-10-09 12:35:32,130 | INFO | queue_monitor | pilot.control.job.4502189035 | get_data_structure | total number of processed events: 200 (read) 2019-10-09 12:35:32,131 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/grid/slots/0/PanDA_Pilot-4502189035/memory_monitor_summary.json (trf name=prmon) 2019-10-09 12:35:32,132 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 1813919, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 421633356, 'wtime': 26182, 'rss': 9488808, 'write_bytes': 0, 'vmem': 14180152, 'read_bytes': 0, 'stime': 254, 'tx_bytes': 49892134, 'pss': 2710767, 'wchar': 0, 'rchar': 0, 'tx_packets': 357927, 'swap': 0, 'utime': 100934}, 'Avg': {'write_bytes': 0, 'nprocs': 9, 'nthreads': 0, 'rx_bytes': 16103, 'rx_packets': 69, 'vmem': 13706009, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 1905, 'pss': 2586054, 'wchar': 0, 'rchar': 0, 'tx_packets': 13, 'rss': 9104189}} 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | .............................. 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . Timing measurements: 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . get job = 0 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . initial setup = 1 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . payload setup = 0 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . total setup = 1 s 2019-10-09 12:35:32,132 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . stage-in = 0 s 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . payload execution = 26203 s 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | . stage-out = 3 s 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | timing_report | .............................. 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.auxiliary.4502189035 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-10-09 12:35:32,133 | DEBUG | queue_monitor | pilot.util.auxiliary.4502189035 | get_panda_tracer_log | PanDA tracer log does not exist: /home/grid/slots/0/PanDA_Pilot-4502189035/pandatracerlog.txt (ignoring) 2019-10-09 12:35:32,133 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/grid/slots/0/PanDA_Pilot-4502189035/pilotlog.txt 2019-10-09 12:35:32,178 | DEBUG | queue_monitor | pilot.control.job.4502189035 | send_state | wrote heartbeat to file /home/grid/slots/0/heartbeat.json 2019-10-09 12:35:32,178 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4502189035 was dequeued from the monitored payloads queue 2019-10-09 12:35:32,780 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | job summary report 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | -------------------------------------------------- 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | PanDA job id: 4502189035 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | task id: 19056279 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | errors: (none) 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | status: LOG_TRANSFER = DONE 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | pilot state: finished 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | transexitcode: 0 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | exeerrorcode: 0 2019-10-09 12:35:32,781 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | exeerrordiag: 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | exitcode: 0 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | exitmsg: OK 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | cpuconsumptiontime: 100569 s 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | nevents: 200 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | neventsw: 0 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | pid: 3836 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | pgrp: 3836 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | corecount: 4 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | event service: False 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | -------------------------------------------------- 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.auxiliary.4502189035 | make_job_report | 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.control.job.4502189035 | has_job_completed | job 4502189035 has completed 2019-10-09 12:35:32,782 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-10-09 12:35:32,793 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/grid/slots/0/PanDA_Pilot-4502189035 2019-10-09 12:35:33,797 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [3836] 2019-10-09 12:35:33,797 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 3836 2019-10-09 12:35:33,797 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-10-09 12:35:34,802 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-10-09 12:35:34,803 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=3836 2019-10-09 12:35:34,881 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [3836] (in reverse order) 2019-10-09 12:35:34,927 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-10-09 12:35:34,928 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-10-09 12:35:34,928 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-10-09 12:35:34,928 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-10-09 12:35:34,933 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-09 12:35:34,933 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.1.25 (11) *** 2019-10-09 12:35:34,934 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-09 12:35:34,934 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-10-09 12:35:34,934 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM 2019-10-09 12:35:34,934 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-10-09 12:35:35,063 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :core-4.1-amd64:core-4.1-noarch Distributor ID: CentOS Description: CentOS Linux release 7.6.1810 (Core) Release: 7.6.1810 Codename: Core 2019-10-09 12:35:35,063 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************** 2019-10-09 12:35:35,566 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/grid/slots/0 2019-10-09 12:35:35,591 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (19610468352 B) 2019-10-09 12:35:35,591 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-10-09 12:35:35,591 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-10-09 12:35:35,596 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-10-09 12:35:35,597 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-10-09 12:35:35,629 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-10-09 12:35:35,655 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 14 threads 2019-10-09 12:35:35,656 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(job, started 139965132605184)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>, <ExcThread(create_data_payload, started 139965107427072)>, <ExcThread(failed_post, started 139964545210112)>, <ExcThread(validate_pre, started 139964578780928)>, <ExcThread(validate, started 139965124212480)>, <ExcThread(copytool_in, started 139964570388224)>, <ExcThread(validate_post, started 139964553602816)>, <ExcThread(queue_monitor, started 139964561995520)>, <ExcThread(execute_payloads, started 139963991586560)>, <ExcThread(payload, started 139965073856256)>] 2019-10-09 12:35:35,710 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-10-09 12:35:35,810 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-10-09 12:35:35,812 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-10-09 12:35:35,957 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads 2019-10-09 12:35:35,958 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(job, started 139965132605184)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>, <ExcThread(failed_post, started 139964545210112)>, <ExcThread(validate_pre, started 139964578780928)>, <ExcThread(validate, started 139965124212480)>, <ExcThread(copytool_in, started 139964570388224)>, <ExcThread(queue_monitor, started 139964561995520)>, <ExcThread(payload, started 139965073856256)>] 2019-10-09 12:35:36,050 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-10-09 12:35:36,259 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 10 threads 2019-10-09 12:35:36,259 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(job, started 139965132605184)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>, <ExcThread(failed_post, started 139964545210112)>, <ExcThread(validate_pre, started 139964578780928)>, <ExcThread(copytool_in, started 139964570388224)>, <ExcThread(queue_monitor, started 139964561995520)>, <ExcThread(payload, started 139965073856256)>] 2019-10-09 12:35:36,480 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-10-09 12:35:36,480 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-10-09 12:35:36,493 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads 2019-10-09 12:35:36,493 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(job, started 139965132605184)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>, <ExcThread(failed_post, started 139964545210112)>, <ExcThread(validate_pre, started 139964578780928)>, <ExcThread(copytool_in, started 139964570388224)>, <ExcThread(queue_monitor, started 139964561995520)>] 2019-10-09 12:35:36,509 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-10-09 12:35:36,509 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-10-09 12:35:36,594 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads 2019-10-09 12:35:36,594 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>, <ExcThread(failed_post, started 139964545210112)>, <ExcThread(validate_pre, started 139964578780928)>, <ExcThread(copytool_in, started 139964570388224)>, <ExcThread(queue_monitor, started 139964561995520)>] 2019-10-09 12:35:36,737 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-10-09 12:35:36,737 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-10-09 12:35:36,795 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads 2019-10-09 12:35:36,796 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>, <ExcThread(failed_post, started 139964545210112)>, <ExcThread(validate_pre, started 139964578780928)>, <ExcThread(copytool_in, started 139964570388224)>] 2019-10-09 12:35:36,799 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-10-09 12:35:36,800 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-10-09 12:35:36,810 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-10-09 12:35:36,897 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads 2019-10-09 12:35:36,897 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>, <ExcThread(failed_post, started 139964545210112)>] 2019-10-09 12:35:36,973 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-10-09 12:35:36,998 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads 2019-10-09 12:35:36,998 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(copytool_out, started 139965090641664)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>] 2019-10-09 12:35:37,811 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-10-09 12:35:37,905 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-10-09 12:35:37,906 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(job_monitor, started 139965082248960)>, <ExcThread(queue_monitoring, started 139964595566336)>] 2019-10-09 12:35:38,080 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-10-09 12:35:41,085 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-10-09 12:35:41,138 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-10-09 12:35:41,138 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 139965299238720)>, <ExcThread(job_monitor, started 139965082248960)>] 2019-10-09 12:36:27,761 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s) 2019-10-09 12:36:27,762 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-10-09 12:36:27,779 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-10-09 12:36:27,779 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-10-09 12:36:27,779 | INFO | MainThread | root | wrap_up | pilot has finished 2019-10-09 12:36:27 UTC [wrapper] ==== pilot stdout END ==== 2019-10-09 12:36:27 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-10-09 12:36:27 UTC [wrapper] Pilot exit status: 0 2019-10-09 12:36:27 UTC [wrapper] STATUSCODE: 0 2019-10-09 12:36:27 UTC [wrapper] apfmon messages muted ---- find pandaIDs.out ---- total 56 -rw-------. 1 grid grid 11357 Jul 25 16:38 LICENSE -rw-------. 1 grid grid 20 Sep 9 13:04 MANIFEST.IN -rw-------. 1 grid grid 11 Oct 9 07:18 pandaIDs.out drwx------. 14 grid grid 216 Oct 9 07:18 pilot -rwx------. 1 grid grid 20136 Sep 9 13:04 pilot.py -rw-------. 1 grid grid 9 Sep 9 13:04 PILOTVERSION -rw-------. 1 grid grid 2251 Jul 25 16:38 README.md -rw-------. 1 grid grid 760 Aug 22 11:01 setup.py -rw-------. 1 grid grid 221 Jul 25 16:38 TODO.md 2019-10-09 12:36:28 UTC [wrapper] pandaIDs.out files: -rw-------. 1 grid grid 11 Oct 9 07:18 /home/grid/slots/0/pilot2/pandaIDs.out 2019-10-09 12:36:28 UTC [wrapper] pandaIDs.out content: 4502189035 2019-10-09 12:36:28 UTC [wrapper] Test setup, not cleaning 2019-10-09 12:36:28 UTC [wrapper] ==== wrapper stdout END ==== 2019-10-09 12:36:28 UTC [wrapper] ==== wrapper stderr END ==== 2019-10-09 12:36:28 UTC [wrapper] wrapper wrapperexiting ec=0, duration=26295 2019-10-09 12:36:28 UTC [wrapper] apfmon messages muted 2019-10-09 14:36:33,127: ***************diag file************ 2019-10-09 14:36:33,127: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=26294.52s KernelTime=771.02s UserTime=100111.11s CPUUsage=383% MaxResidentMemory=1947104kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=24504 MinorPageFaults=23719851 Swaps=0 ForcedSwitches=12547878 WaitSwitches=12780587 Inputs=8075432 Outputs=1062648 SocketReceived=0 SocketSent=0 Signals=0 nodename=David_Cameron@dcameron04.cern.ch exitcode=0 2019-10-09 14:36:33,153: ******************************WorkDir*********************** 2019-10-09 14:36:33,153: total 270284 drwxrwx--x. 7 grid grid 4096 Oct 9 14:36 . drwxr-x--x. 6 grid grid 42 Sep 26 14:51 .. -rw-------. 1 grid grid 7614407 Oct 9 07:18 agis_ddmendpoints.json -rw-------. 1 grid grid 3936269 Oct 9 07:18 agis_schedconf.cvmfs.json drwx------. 2 grid grid 6 Oct 9 07:18 .alrb drwxr-xr-x. 3 grid grid 17 Oct 9 07:18 APPS -rw-------. 1 grid grid 538 Oct 9 07:18 .asetup -rw-------. 1 grid grid 4503 Oct 9 07:18 .asetup.save drwx------. 2 grid grid 6 Oct 9 07:18 .asetup-sysbin_3837 -rw-rw-r--. 1 grid grid 0 Oct 9 07:17 boinc_lockfile -rw-rw-r--. 1 grid grid 8192 Oct 9 14:36 boinc_mmap_file -rw-rw-r--. 1 grid grid 537 Oct 9 14:24 boinc_task_state.xml -rw-rw-r--. 1 grid grid 262219452 Oct 9 07:18 EVNT.18605764._000052.pool.root.1 -rw-------. 1 grid grid 70980 Oct 9 14:35 heartbeat.json -rw-rw-r--. 1 grid grid 5865 Oct 9 07:17 init_data.xml -rw-rw-r--. 1 grid grid 267508 Oct 9 07:18 input.tar.gz -rw-rw-r--. 1 grid grid 112 Oct 9 07:17 job.xml -rw-------. 1 grid grid 1276930 Oct 9 14:36 log.19056279._005620.job.log.1 -rw-------. 1 grid grid 919314 Oct 9 14:35 log.19056279._005620.job.log.tgz.1 -rw-------. 1 grid grid 796 Oct 9 14:35 memory_monitor_summary.json -rw-------. 1 grid grid 519 Oct 9 14:36 MZDLDm0qqbvnShfckohDCDFpABFKDmABFKDmMIaXDmABFKDmCI71Bn.diag -rw-------. 1 grid grid 463 Oct 9 14:36 output.list -rw-------. 1 grid grid 2841 Oct 8 00:40 pandaJobData.out drwx------. 3 grid grid 229 Oct 9 07:18 pilot2 -rw-r--r--. 1 grid grid 259319 Oct 8 00:29 pilot2.tar.gz -rw-------. 1 grid grid 12828 Oct 9 14:36 pilotlog.txt -rw-r--r--. 1 grid grid 4480 Oct 8 00:40 queuedata.json -rw-rw-r--. 1 grid grid 815 Oct 9 07:18 RTE.tar.gz -rwxr-xr-x. 1 grid grid 7950 Oct 9 07:17 run_atlas -rwx------. 1 grid grid 12762 Oct 8 00:40 runpilot2-wrapper.sh -rw-rw-r--. 1 grid grid 692 Oct 9 14:36 runtime_log -rw-rw-r--. 1 grid grid 6899 Oct 9 14:36 runtime_log.err drwxrwx--x. 2 grid grid 131 Oct 9 14:36 shared -rw-rw-r--. 1 grid grid 8688 Oct 9 07:18 start_atlas.sh -rw-rw-r--. 1 grid grid 43463 Oct 9 14:36 stderr.txt -rw-rw-r--. 1 grid grid 107 Oct 9 07:17 wrapper_26015_x86_64-pc-linux-gnu -rw-rw-r--. 1 grid grid 28 Oct 9 14:36 wrapper_checkpoint.txt 2019-10-09 14:36:33,153: running start_atlas return value is 0 2019-10-09 14:36:33,153: Parent exit 0 2019-10-09 14:36:33,155: child process exit 0 14:36:33 (29305): run_atlas exited; CPU time 100123.771147 14:36:33 (29305): called boinc_finish(0) </stderr_txt> ]]>
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