Task 2842347

Name	SidNDm8uMwvn9Rq4apoT9bVoABFKDmABFKDmwYLWDmABFKDmjMbSKm_0
Workunit	1956234
Created	3 Dec 2019, 12:57:29 UTC
Sent	4 Dec 2019, 11:00:50 UTC
Report deadline	11 Dec 2019, 11:00:50 UTC
Received	4 Dec 2019, 19:40:16 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	3959
Run time	3 hours 52 min 37 sec
CPU time	23 hours 8 min 51 sec
Validate state	Valid
Credit	1,540.79
Device peak FLOPS	21.70 GFLOPS
Application version	ATLAS Simulation v0.84 (vbox64_mt_mcore_atlas) x86_64-pc-linux-gnu
Peak working set size	666.21 MB
Peak swap size	10.57 GB
Peak disk usage	3.85 GB
Stderr output

<core_client_version>7.6.31</core_client_version>
<![CDATA[
<stderr_txt>
2019-12-04 08:46:01 (12152): vboxwrapper (7.7.26197): starting
2019-12-04 08:46:01 (12152): Feature: Checkpoint interval offset (5 seconds)
2019-12-04 08:46:01 (12152): Detected: VirtualBox VboxManage Interface (Version: 5.1.30)
2019-12-04 08:46:01 (12152): Detected: Minimum checkpoint interval (900.000000 seconds)
2019-12-04 08:46:01 (12152): Successfully copied 'init_data.xml' to the shared directory.
2019-12-04 08:46:01 (12152): Create VM. (boinc_3347f070991a8a50, slot#0)
2019-12-04 08:46:01 (12152): Setting Memory Size for VM. (10200MB)
2019-12-04 08:46:01 (12152): Setting CPU Count for VM. (8)
2019-12-04 08:46:01 (12152): Setting Chipset Options for VM.
2019-12-04 08:46:01 (12152): Setting Boot Options for VM.
2019-12-04 08:46:02 (12152): Setting Network Configuration for NAT.
2019-12-04 08:46:02 (12152): Enabling VM Network Access.
2019-12-04 08:46:02 (12152): Disabling USB Support for VM.
2019-12-04 08:46:02 (12152): Disabling COM Port Support for VM.
2019-12-04 08:46:02 (12152): Disabling LPT Port Support for VM.
2019-12-04 08:46:02 (12152): Disabling Audio Support for VM.
2019-12-04 08:46:02 (12152): Disabling Clipboard Support for VM.
2019-12-04 08:46:02 (12152): Disabling Drag and Drop Support for VM.
2019-12-04 08:46:02 (12152): Adding storage controller(s) to VM.
2019-12-04 08:46:02 (12152): Adding virtual disk drive to VM. (vm_image.vdi)
2019-12-04 08:46:02 (12152): Adding VirtualBox Guest Additions to VM.
2019-12-04 08:46:02 (12152): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-12-04 08:46:03 (12152): forwarding host port 59547 to guest port 80
2019-12-04 08:46:03 (12152): Enabling remote desktop for VM.
2019-12-04 08:46:03 (12152): Enabling shared directory for VM.
2019-12-04 08:46:03 (12152): Starting VM. (boinc_3347f070991a8a50, slot#0)
2019-12-04 08:46:04 (12152): Successfully started VM. (PID = '12881')
2019-12-04 08:46:04 (12152): Reporting VM Process ID to BOINC.
2019-12-04 08:46:04 (12152): Guest Log: BIOS: VirtualBox 5.1.30
2019-12-04 08:46:04 (12152): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63
2019-12-04 08:46:05 (12152): VM state change detected. (old = 'poweroff', new = 'running')
2019-12-04 08:46:05 (12152): Detected: Web Application Enabled (http://localhost:59547)
2019-12-04 08:46:05 (12152): Detected: Remote Desktop Enabled (localhost:46439)
2019-12-04 08:46:05 (12152): Preference change detected
2019-12-04 08:46:05 (12152): Setting CPU throttle for VM. (100%)
2019-12-04 08:46:05 (12152): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2019-12-04 08:46:07 (12152): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2019-12-04 08:46:07 (12152): Guest Log: BIOS: Booting from Hard Disk...
2019-12-04 08:46:09 (12152): Guest Log: BIOS: KBD: unsupported int 16h function 03
2019-12-04 08:46:09 (12152): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2019-12-04 08:46:09 (12152): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2019-12-04 08:46:18 (12152): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2019-12-04 08:46:18 (12152): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2019-12-04 08:46:21 (12152): Guest Log: Checking CVMFS...
2019-12-04 08:46:25 (12152): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.000261 main     Log opened 2019-12-04T08:46:23.719057000Z
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.000439 main     OS Product: Linux
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.000485 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.000571 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.000613 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.000614 main     Process ID: 1746
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.000615 main     Package type: LINUX_64BITS_GENERIC
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.001870 main     5.2.32 r132073 started. Verbose level = 0
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.003144 main     Error: Service 'control' failed to initialize: VERR_INVALID_PARAMETER
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.003398 main     Session 0 is about to close ...
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.003456 main     Stopping all guest processes ...
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.003515 main     Closing all guest files ...
2019-12-04 08:46:25 (12152): Guest Log: 00:00:00.004497 main     Ended.
2019-12-04 08:46:38 (12152): Guest Log: CVMFS is ok
2019-12-04 08:46:39 (12152): Guest Log: Mounting shared directory
2019-12-04 08:46:39 (12152): Guest Log: Copying input files
2019-12-04 08:46:41 (12152): Guest Log: Copied input files into RunAtlas.
2019-12-04 08:46:42 (12152): Guest Log: copied the webapp to /var/www
2019-12-04 08:46:42 (12152): Guest Log: This vm does not need to setup an http proxy
2019-12-04 08:46:42 (12152): Guest Log: ATHENA_PROC_NUMBER=8
2019-12-04 08:46:43 (12152): Guest Log:  *** Starting ATLAS job. (PandaID=4566668822 taskID=19782798) ***
2019-12-04 10:25:07 (12152): Status Report: Elapsed Time: '6000.000000'
2019-12-04 10:25:07 (12152): Status Report: CPU Time: '36542.690000'
2019-12-04 12:04:10 (12152): Status Report: Elapsed Time: '12000.000000'
2019-12-04 12:04:10 (12152): Status Report: CPU Time: '75287.390000'
2019-12-04 12:38:28 (12152): Guest Log:  *** Job finished ***
2019-12-04 12:38:28 (12152): Guest Log:  *** The last 20 lines of the pilot log: ***
2019-12-04 12:38:28 (12152): Guest Log: -rw-------.  1 atlas atlas 11357 Jul 25 14:38 LICENSE
2019-12-04 12:38:28 (12152): Guest Log: -rw-------.  1 atlas atlas    20 Sep  9 11:04 MANIFEST.IN
2019-12-04 12:38:28 (12152): Guest Log: -rw-------.  1 atlas atlas    11 Dec  4 08:47 pandaIDs.out
2019-12-04 12:38:28 (12152): Guest Log: drwx------. 14 atlas atlas   216 Dec  4 08:47 pilot
2019-12-04 12:38:28 (12152): Guest Log: -rwx------.  1 atlas atlas 20750 Dec  2 10:02 pilot.py
2019-12-04 12:38:28 (12152): Guest Log: -rw-------.  1 atlas atlas     8 Dec  2 10:02 PILOTVERSION
2019-12-04 12:38:28 (12152): Guest Log: -rw-------.  1 atlas atlas  2212 Nov 14 10:01 README.md
2019-12-04 12:38:28 (12152): Guest Log: -rw-------.  1 atlas atlas   766 Oct 10 14:01 setup.py
2019-12-04 12:38:28 (12152): Guest Log: -rw-------.  1 atlas atlas   221 Jul 25 14:38 TODO.md
2019-12-04 12:38:28 (12152): Guest Log: 2019-12-04 12:38:26 UTC [wrapper] pandaIDs.out files:
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas 11 Dec  4 08:47 /home/atlas/RunAtlas/pilot2/pandaIDs.out
2019-12-04 12:38:28 (12152): Guest Log: 2019-12-04 12:38:26 UTC [wrapper] pandaIDs.out content:
2019-12-04 12:38:28 (12152): Guest Log: 4566668822
2019-12-04 12:38:28 (12152): Guest Log: 2019-12-04 12:38:26 UTC [wrapper] Test setup, not cleaning
2019-12-04 12:38:28 (12152): Guest Log: 2019-12-04 12:38:26 UTC [wrapper] ==== wrapper stdout END ====
2019-12-04 12:38:28 (12152): Guest Log: 2019-12-04 12:38:26 UTC [wrapper] ==== wrapper stderr END ====
2019-12-04 12:38:28 (12152): Guest Log: 2019-12-04 12:38:26 UTC [wrapper] wrapper wrapperexiting ec=0, duration=13905
2019-12-04 12:38:28 (12152): Guest Log: 2019-12-04 12:38:26 UTC [wrapper] apfmon messages muted
2019-12-04 12:38:28 (12152): Guest Log:  *** Error codes and diagnostics ***
2019-12-04 12:38:28 (12152): Guest Log:     "exeErrorCode": 0,
2019-12-04 12:38:28 (12152): Guest Log:     "exeErrorDiag": "",
2019-12-04 12:38:28 (12152): Guest Log:     "pilotErrorCode": 0,
2019-12-04 12:38:28 (12152): Guest Log:     "pilotErrorDiag": "",
2019-12-04 12:38:28 (12152): Guest Log:  *** Listing of results directory ***
2019-12-04 12:38:28 (12152): Guest Log: total 127328
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas    266835 Dec  3 12:23 pilot2.tar.gz
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas      4474 Dec  3 12:55 queuedata.json
2019-12-04 12:38:28 (12152): Guest Log: -rwx------. 1 atlas atlas     12849 Dec  3 12:57 runpilot2-wrapper.sh
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas      2896 Dec  3 12:57 pandaJobData.out
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas     15059 Dec  4 08:46 start_atlas.sh
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas       812 Dec  4 08:46 RTE.tar.gz
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas    275113 Dec  4 08:46 input.tar.gz
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas      8418 Dec  4 08:46 init_data.xml
2019-12-04 12:38:28 (12152): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Dec  4 08:46 EVNT.19609546._000926.pool.root.1 -> /data/./ATLAS.root_0
2019-12-04 12:38:28 (12152): Guest Log: drwxr-xr-x. 3 atlas atlas        17 Dec  4 08:46 APPS
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas   3752074 Dec  4 08:47 agis_schedconf.cvmfs.json
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas   7752774 Dec  4 08:47 agis_ddmendpoints.json
2019-12-04 12:38:28 (12152): Guest Log: drwx------. 3 atlas atlas       229 Dec  4 08:47 pilot2
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas 113987495 Dec  4 12:36 HITS.19782798._053787.pool.root.1
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas       794 Dec  4 12:37 memory_monitor_summary.json
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas   1319924 Dec  4 12:37 log.19782798._053787.job.log.tgz.1
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas     75016 Dec  4 12:37 heartbeat.json
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas      9055 Dec  4 12:38 pilotlog.txt
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas    709991 Dec  4 12:38 log.19782798._053787.job.log.1
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas       463 Dec  4 12:38 output.list
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas       692 Dec  4 12:38 runtime_log
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas   2119680 Dec  4 12:38 result.tar.gz
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas       567 Dec  4 12:38 SidNDm8uMwvn9Rq4apoT9bVoABFKDmABFKDmwYLWDmABFKDmjMbSKm.diag
2019-12-04 12:38:28 (12152): Guest Log: -rw-r--r--. 1 atlas atlas      7935 Dec  4 12:38 runtime_log.err
2019-12-04 12:38:28 (12152): Guest Log: Looking for outputfile HITS.19782798._053787.pool.root.1
2019-12-04 12:38:28 (12152): Guest Log: HITS file was successfully produced
2019-12-04 12:38:28 (12152): Guest Log: -rw-------. 1 atlas atlas 113987495 Dec  4 12:36 /home/atlas/RunAtlas/HITS.19782798._053787.pool.root.1
2019-12-04 12:38:28 (12152): Guest Log: Successfully finished the ATLAS job!
2019-12-04 12:38:28 (12152): Guest Log: Copying the results back to the shared directory!
2019-12-04 12:38:29 (12152): Guest Log:  *** Contents of shared directory: ***
2019-12-04 12:38:29 (12152): Guest Log: total 332980
2019-12-04 12:38:29 (12152): Guest Log: -rw-r--r--. 1 root root 224546843 Dec  4  2019 ATLAS.root_0
2019-12-04 12:38:29 (12152): Guest Log: -rw-r--r--. 1 root root 113987495 Dec  4 12:36 HITS.pool.root.1
2019-12-04 12:38:29 (12152): Guest Log: -rw-r--r--. 1 root root      8418 Dec  4  2019 init_data.xml
2019-12-04 12:38:29 (12152): Guest Log: -rw-r--r--. 1 root root    275113 Dec  4  2019 input.tar.gz
2019-12-04 12:38:29 (12152): Guest Log: -rw-r--r--. 1 root root   2119680 Dec  4  2019 result.tar.gz
2019-12-04 12:38:29 (12152): Guest Log: -rw-r--r--. 1 root root       812 Dec  4  2019 RTE.tar.gz
2019-12-04 12:38:29 (12152): Guest Log: -rw-r--r--. 1 root root     15059 Dec  4  2019 start_atlas.sh
2019-12-04 12:38:29 (12152): Guest Log:  *** Success! Shutting down the machine. ***
2019-12-04 12:38:29 (12152): VM Completion File Detected.
2019-12-04 12:38:29 (12152): Powering off VM.
2019-12-04 12:38:30 (12152): Successfully stopped VM.
2019-12-04 12:38:30 (12152): Deregistering VM. (boinc_3347f070991a8a50, slot#0)
2019-12-04 12:38:30 (12152): Removing network bandwidth throttle group from VM.
2019-12-04 12:38:30 (12152): Removing storage controller(s) from VM.
2019-12-04 12:38:30 (12152): Removing VM from VirtualBox.
2019-12-04 12:38:30 (12152): Removing virtual disk drive from VirtualBox.
12:38:36 (12152): called boinc_finish(0)

</stderr_txt>
]]>
Development for LHC@home

Stderr output
