| Name | 948KDmGpazvnShfckohDCDFpABFKDmABFKDmyiALDm4CFKDmiQXaQo_0 |
| Workunit | 1960106 |
| Created | 12 Dec 2019, 10:24:46 UTC |
| Sent | 12 Dec 2019, 10:35:21 UTC |
| Report deadline | 19 Dec 2019, 10:35:21 UTC |
| Received | 12 Dec 2019, 11:21:18 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3682 |
| Run time | 12 min 5 sec |
| CPU time | 24 min 50 sec |
| Validate state | Valid |
| Credit | 29.56 |
| Device peak FLOPS | 17.61 GFLOPS |
| Application version | ATLAS Simulation v0.92 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.79 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 722.90 MB |
Stderr output
<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
12:01:01 (2320493): wrapper (7.7.26015): starting
12:01:01 (2320493): wrapper: running run_atlas (--nthreads 4)
Thu Dec 12 12:01:01 CET 2019: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
Thu Dec 12 12:01:01 CET 2019: Arguments: --nthreads 4
Thu Dec 12 12:01:01 CET 2019: Threads: 4
Thu Dec 12 12:01:01 CET 2019: Checking for CVMFS
Thu Dec 12 12:01:01 CET 2019: Probing /cvmfs/atlas.cern.ch... OK
Thu Dec 12 12:01:01 CET 2019: Probing /cvmfs/atlas-condb.cern.ch... OK
Thu Dec 12 12:01:02 CET 2019: Probing /cvmfs/grid.cern.ch... OK
Thu Dec 12 12:01:02 CET 2019: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
Thu Dec 12 12:01:02 CET 2019: 2.5.1.0 2253261 36 39020 57868 3 78 7350010 10240001 0 65024 0 63921 99.9797 443 9844 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://137.138.148.170:3128 1
Thu Dec 12 12:01:02 CET 2019: CVMFS is ok
Thu Dec 12 12:01:02 CET 2019: Checking for singularity binary...
Thu Dec 12 12:01:02 CET 2019: Using singularity found in PATH at /usr/bin/singularity
Thu Dec 12 12:01:02 CET 2019: Running /usr/bin/singularity --version
Thu Dec 12 12:01:02 CET 2019: singularity version 3.4.2-1.1.el7
Thu Dec 12 12:01:02 CET 2019: Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
Thu Dec 12 12:01:02 CET 2019: pcoslo5.cern.ch
Thu Dec 12 12:01:02 CET 2019: Singularity works
Thu Dec 12 12:01:03 CET 2019: Set ATHENA_PROC_NUMBER=4
Thu Dec 12 12:01:03 CET 2019: Starting ATLAS job with PandaID=4002876565
Thu Dec 12 12:01:03 CET 2019: Running command: /usr/bin/singularity exec --pwd /home/dcameron/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
Thu Dec 12 12:13:04 CET 2019: *** The last 200 lines of the pilot log: ***
Thu Dec 12 12:13:04 CET 2019: "avgPSS": 644,
Thu Dec 12 12:13:04 CET 2019: "avgRSS": 1628,
Thu Dec 12 12:13:04 CET 2019: "avgSwap": 0,
Thu Dec 12 12:13:04 CET 2019: "avgVMEM": 9768,
Thu Dec 12 12:13:04 CET 2019: "rateRBYTES": 0,
Thu Dec 12 12:13:04 CET 2019: "rateRCHAR": 97,
Thu Dec 12 12:13:04 CET 2019: "rateWBYTES": 0,
Thu Dec 12 12:13:04 CET 2019: "rateWCHAR": 1
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "Max": {
Thu Dec 12 12:13:04 CET 2019: "maxPSS": 644,
Thu Dec 12 12:13:04 CET 2019: "maxRSS": 1628,
Thu Dec 12 12:13:04 CET 2019: "maxSwap": 0,
Thu Dec 12 12:13:04 CET 2019: "maxVMEM": 9768,
Thu Dec 12 12:13:04 CET 2019: "totRBYTES": 0,
Thu Dec 12 12:13:04 CET 2019: "totRCHAR": 5844,
Thu Dec 12 12:13:04 CET 2019: "totWBYTES": 0,
Thu Dec 12 12:13:04 CET 2019: "totWCHAR": 89
Thu Dec 12 12:13:04 CET 2019: }
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "postExe": {
Thu Dec 12 12:13:04 CET 2019: "cpuTime": 0,
Thu Dec 12 12:13:04 CET 2019: "wallTime": 1
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "preExe": {
Thu Dec 12 12:13:04 CET 2019: "cpuTime": 0,
Thu Dec 12 12:13:04 CET 2019: "wallTime": 1
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "total": {
Thu Dec 12 12:13:04 CET 2019: "cpuTime": 32,
Thu Dec 12 12:13:04 CET 2019: "wallTime": 65
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "validation": {
Thu Dec 12 12:13:04 CET 2019: "cpuTime": 0,
Thu Dec 12 12:13:04 CET 2019: "wallTime": 0
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "wallTime": 63
Thu Dec 12 12:13:04 CET 2019: }
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "machine": {
Thu Dec 12 12:13:04 CET 2019: "cpu_family": "6",
Thu Dec 12 12:13:04 CET 2019: "linux_distribution": [
Thu Dec 12 12:13:04 CET 2019: "CentOS Linux",
Thu Dec 12 12:13:04 CET 2019: "7.6.1810",
Thu Dec 12 12:13:04 CET 2019: "Core"
Thu Dec 12 12:13:04 CET 2019: ],
Thu Dec 12 12:13:04 CET 2019: "model": "60",
Thu Dec 12 12:13:04 CET 2019: "model_name": "Intel(R) Core(TM) i7-4790 CPU @ 3.60GHz",
Thu Dec 12 12:13:04 CET 2019: "node": "pcoslo5.cern.ch",
Thu Dec 12 12:13:04 CET 2019: "platform": "Linux-3.10.0-1062.4.3.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
Thu Dec 12 12:13:04 CET 2019: },
Thu Dec 12 12:13:04 CET 2019: "transform": {
Thu Dec 12 12:13:04 CET 2019: "cpuEfficiency": 0.5701,
Thu Dec 12 12:13:04 CET 2019: "cpuPWEfficiency": 0.6086,
Thu Dec 12 12:13:04 CET 2019: "cpuTime": 3,
Thu Dec 12 12:13:04 CET 2019: "cpuTimeTotal": 1513,
Thu Dec 12 12:13:04 CET 2019: "externalCpuTime": 4,
Thu Dec 12 12:13:04 CET 2019: "processedEvents": 10,
Thu Dec 12 12:13:04 CET 2019: "trfPredata": null,
Thu Dec 12 12:13:04 CET 2019: "wallTime": 649
Thu Dec 12 12:13:04 CET 2019: }
Thu Dec 12 12:13:04 CET 2019: }
Thu Dec 12 12:13:04 CET 2019: }
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,406 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,406 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,406 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,406 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,406 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -356825677 B to job metrics
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,406 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,406 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1576148786.0, 1576148847.0, 1576148908.0, 1576148969.0], y=[2452011.0, 2488538.0, 2502835.0, 2089956.0] (must be same and length>=4)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,407 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=10"
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,407 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,407 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/dcameron/boinc/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 34370, 'nprocs': 9, 'nthreads': 1, 'rx_bytes': 21029175, 'wtime': 616, 'rss': 9420156, 'write_bytes': 16719872, 'vmem': 14016320, 'read_bytes': 2953260032, 'stime': 15, 'tx_bytes': 33450677, 'pss': 2502835, 'wchar': 23880749, 'rchar': 970476831, 'tx_packets': 38908, 'swap': 0, 'utime': 1479}, 'Avg': {'write_bytes': 27139, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 34133, 'rx_packets': 55, 'vmem': 8091351, 'read_bytes': 4793630, 'swap': 0, 'tx_bytes': 54295, 'pss': 1756874, 'wchar': 38762, 'rchar': 1575244, 'tx_packets': 63, 'rss': 5223672}}
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 0 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 0 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 670 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 1 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,408 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,409 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /home/dcameron/boinc/slots/0/heartbeat.json
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,409 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,409 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-3884346-30220
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,701 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 1502 s
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 2327295
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 2327295
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 4
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,702 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:29,706 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/dcameron/boinc/slots/0/PanDA_Pilot-4002876565
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:30,708 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [2327295]
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:30,708 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 2327295
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:30,708 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,713 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,713 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=2327295
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,773 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [2327295] (in reverse order)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,803 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,803 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,803 | INFO | retrieve | pilot.util.processes | cleanup | resetting job object
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,803 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,803 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
Thu Dec 12 12:13:04 CET 2019: mpi4py not found
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,805 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,805 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.3 (16) ***
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,805 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,805 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,805 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,839 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
Thu Dec 12 12:13:04 CET 2019: LSB Version: :core-4.1-amd64:core-4.1-noarch
Thu Dec 12 12:13:04 CET 2019: Distributor ID: CentOS
Thu Dec 12 12:13:04 CET 2019: Description: CentOS Linux release 7.6.1810 (Core)
Thu Dec 12 12:13:04 CET 2019: Release: 7.6.1810
Thu Dec 12 12:13:04 CET 2019: Codename: Core
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:31,839 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,340 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/dcameron/boinc/slots/0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,350 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (36865835008 B)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,350 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,350 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,381 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,388 | WARNING | monitor | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,388 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,472 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,473 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,556 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,583 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,583 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,707 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,718 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,781 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,781 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,951 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,953 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,968 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:32,968 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140416906606400)>, <ExcThread(execute_payloads, started 140415869105920)>, <ExcThread(queue_monitor, started 140415885891328)>, <ExcThread(copytool_out, started 140416498263808)>, <ExcThread(queue_monitoring, started 140416464692992)>, <ExcThread(validate_post, started 140415902676736)>, <ExcThread(job_monitor, started 140416456300288)>]
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:33,133 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:33,381 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:33,521 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:33,704 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:33,973 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:33,974 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140416906606400)>, <ExcThread(queue_monitor, started 140415885891328)>, <ExcThread(queue_monitoring, started 140416464692992)>, <ExcThread(job_monitor, started 140416456300288)>]
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:34,420 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:34,420 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:34,977 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:34,977 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140416906606400)>, <ExcThread(queue_monitoring, started 140416464692992)>, <ExcThread(job_monitor, started 140416456300288)>]
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:36,705 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:36,987 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:12:36,987 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140416906606400)>, <ExcThread(job_monitor, started 140416456300288)>]
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:03,151 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:03,151 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04,107 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04,107 | INFO | MainThread | root | wrap_up | traces error code: 0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04,107 | INFO | MainThread | root | wrap_up | pilot has finished
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] ==== pilot stdout END ====
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] ==== wrapper stdout RESUME ====
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] Pilot exit status: 0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] STATUSCODE: 0
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] apfmon messages muted
Thu Dec 12 12:13:04 CET 2019: ---- find pandaID.out ----
Thu Dec 12 12:13:04 CET 2019: total 60
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 11357 Jul 25 16:38 LICENSE
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 20 Sep 9 13:04 MANIFEST.IN
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 11 Dec 12 12:01 pandaIDs.out
Thu Dec 12 12:13:04 CET 2019: drwx------. 14 dcameron zp 216 Dec 12 12:01 pilot
Thu Dec 12 12:13:04 CET 2019: -rwx------. 1 dcameron zp 20750 Dec 2 11:02 pilot.py
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 8 Dec 2 11:02 PILOTVERSION
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 2212 Nov 14 11:01 README.md
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 766 Oct 10 16:01 setup.py
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 221 Jul 25 16:38 TODO.md
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 11 Dec 12 12:01 /home/dcameron/boinc/slots/0/pilot2/pandaIDs.out
Thu Dec 12 12:13:04 CET 2019: 4002876565
Thu Dec 12 12:13:04 CET 2019:
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] Test setup, not cleaning
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] ==== wrapper stdout END ====
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] ==== wrapper stderr END ====
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] wrapper wrapperexiting ec=0, duration=721
Thu Dec 12 12:13:04 CET 2019: 2019-12-12 11:13:04 UTC [wrapper] apfmon messages muted
Thu Dec 12 12:13:04 CET 2019: *** Error codes and diagnostics ***
Thu Dec 12 12:13:04 CET 2019: "exeErrorCode": 0,
Thu Dec 12 12:13:04 CET 2019: "exeErrorDiag": "",
Thu Dec 12 12:13:04 CET 2019: "pilotErrorCode": 0,
Thu Dec 12 12:13:04 CET 2019: "pilotErrorDiag": "",
Thu Dec 12 12:13:04 CET 2019: *** Listing of results directory ***
Thu Dec 12 12:13:04 CET 2019: total 379276
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 266835 Dec 12 10:26 pilot2.tar.gz
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 4492 Dec 12 11:22 queuedata.json
Thu Dec 12 12:13:04 CET 2019: -rwx------. 1 dcameron zp 12641 Dec 12 11:24 runpilot2-wrapper.sh
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 2958 Dec 12 11:24 pandaJobData.out
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 107 Dec 12 12:01 wrapper_26015_x86_64-pc-linux-gnu
Thu Dec 12 12:13:04 CET 2019: -rwxr-xr-x. 1 dcameron zp 4813 Dec 12 12:01 run_atlas
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 112 Dec 12 12:01 job.xml
Thu Dec 12 12:13:04 CET 2019: drwxrwx--x. 2 dcameron zp 86 Dec 12 12:01 shared
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 6274 Dec 12 12:01 init_data.xml
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 0 Dec 12 12:01 boinc_lockfile
12:13:04 (2320493): run_atlas exited; CPU time 1490.129349
12:13:04 (2320493): called boinc_finish(0)
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 365251149 Dec 12 12:01 EVNT.14296418._001447.pool.root.1
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 815 Dec 12 12:01 RTE.tar.gz
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 275019 Dec 12 12:01 input.tar.gz
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 8541 Dec 12 12:01 start_atlas.sh
Thu Dec 12 12:13:04 CET 2019: drwxr-xr-x. 3 dcameron zp 17 Dec 12 12:01 APPS
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 3742517 Dec 12 12:01 agis_schedconf.cvmfs.json
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 7755224 Dec 12 12:01 agis_ddmendpoints.json
Thu Dec 12 12:13:04 CET 2019: drwx------. 3 dcameron zp 229 Dec 12 12:01 pilot2
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 534 Dec 12 12:09 boinc_task_state.xml
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 9151366 Dec 12 12:12 HITS.000649-3884346-30220._078090.pool.root.1
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 837 Dec 12 12:12 memory_monitor_summary.json
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 714978 Dec 12 12:12 log.000649-3884346-30220._078090.job.log.tgz.1
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 15055 Dec 12 12:12 heartbeat.json
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 8192 Dec 12 12:12 boinc_mmap_file
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 25 Dec 12 12:12 wrapper_checkpoint.txt
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 8225 Dec 12 12:13 pilotlog.txt
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 157946 Dec 12 12:13 log.000649-3884346-30220._078090.job.log.1
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 504 Dec 12 12:13 948KDmGpazvnShfckohDCDFpABFKDmABFKDmyiALDm4CFKDmiQXaQo.diag
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 7412 Dec 12 12:13 runtime_log.err
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 499 Dec 12 12:13 output.list
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 742 Dec 12 12:13 runtime_log
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 901120 Dec 12 12:13 result.tar.gz
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 2232 Dec 12 12:13 stderr.txt
Thu Dec 12 12:13:04 CET 2019: HITS file was successfully produced:
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 9151366 Dec 12 12:12 shared/HITS.pool.root.1
Thu Dec 12 12:13:04 CET 2019: *** Contents of shared directory: ***
Thu Dec 12 12:13:04 CET 2019: total 366800
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 365251149 Dec 12 12:01 ATLAS.root_0
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 8513 Dec 12 12:01 start_atlas.sh
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 815 Dec 12 12:01 RTE.tar.gz
Thu Dec 12 12:13:04 CET 2019: -rw-r--r--. 1 dcameron zp 275019 Dec 12 12:01 input.tar.gz
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 9151366 Dec 12 12:12 HITS.pool.root.1
Thu Dec 12 12:13:04 CET 2019: -rw-------. 1 dcameron zp 901120 Dec 12 12:13 result.tar.gz
</stderr_txt>
]]>
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