| Name | uF9MDmzW48vnShfckohDCDFpABFKDmABFKDmyiALDmsDFKDmZD6Jgm_0 |
| Workunit | 1969416 |
| Created | 7 Jan 2020, 13:57:10 UTC |
| Sent | 7 Jan 2020, 18:43:36 UTC |
| Report deadline | 14 Jan 2020, 18:43:36 UTC |
| Received | 7 Jan 2020, 19:36:34 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3717 |
| Run time | 48 min 40 sec |
| CPU time | 1 hours 44 min 56 sec |
| Validate state | Valid |
| Credit | 119.13 |
| Device peak FLOPS | 17.62 GFLOPS |
| Application version | ATLAS Simulation v0.99 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.85 GB |
| Peak swap size | 3.58 GB |
| Peak disk usage | 731.81 MB |
Stderr output
<core_client_version>7.12.0</core_client_version>
<![CDATA[
<stderr_txt>
19:45:36 (2939): wrapper (7.7.26015): starting
19:45:36 (2939): wrapper: running run_atlas (--nthreads 4)
di 7 jan 2020 19:45:36 CET: Arguments: --nthreads 4
di 7 jan 2020 19:45:36 CET: Threads: 4
di 7 jan 2020 19:45:36 CET: Checking for CVMFS
di 7 jan 2020 19:45:45 CET: Probing /cvmfs/atlas.cern.ch... OK
di 7 jan 2020 19:45:47 CET: Probing /cvmfs/atlas-condb.cern.ch... OK
di 7 jan 2020 19:45:49 CET: Probing /cvmfs/grid.cern.ch... OK
di 7 jan 2020 19:45:50 CET: Probing /cvmfs/cernvm-prod.cern.ch... OK
di 7 jan 2020 19:45:51 CET: Probing /cvmfs/sft.cern.ch... OK
di 7 jan 2020 19:45:53 CET: Probing /cvmfs/alice.cern.ch... OK
di 7 jan 2020 19:45:54 CET: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
di 7 jan 2020 19:45:54 CET: 2.5.2.0 3092 0 24796 58861 3 1 2283449 4194305 0 65024 0 0 n/a 20334 2631 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
di 7 jan 2020 19:45:54 CET: CVMFS is ok
di 7 jan 2020 19:45:54 CET: System is not Red Hat/CentOS 7, singularity is required
di 7 jan 2020 19:45:54 CET: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
di 7 jan 2020 19:45:54 CET: Checking for singularity binary...
di 7 jan 2020 19:45:54 CET: Singularity is not installed, using version from CVMFS
di 7 jan 2020 19:45:54 CET: Checking singularity works with /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
di 7 jan 2020 19:48:20 CET: [34mINFO: [0m Convert SIF file to sandbox... LinAH125 [34mINFO: [0m Cleaning up image...
di 7 jan 2020 19:48:20 CET: Singularity works
19:50:04 (2080): wrapper (7.7.26015): starting
19:50:04 (2080): wrapper: running run_atlas (--nthreads 4)
di 7 jan 2020 19:50:04 CET: Arguments: --nthreads 4
di 7 jan 2020 19:50:04 CET: Threads: 4
di 7 jan 2020 19:50:04 CET: Checking for CVMFS
di 7 jan 2020 19:50:12 CET: Probing /cvmfs/atlas.cern.ch... OK
di 7 jan 2020 19:50:13 CET: Probing /cvmfs/atlas-condb.cern.ch... OK
di 7 jan 2020 19:50:14 CET: Probing /cvmfs/grid.cern.ch... OK
di 7 jan 2020 19:50:15 CET: Probing /cvmfs/cernvm-prod.cern.ch... OK
di 7 jan 2020 19:50:16 CET: Probing /cvmfs/sft.cern.ch... OK
di 7 jan 2020 19:50:18 CET: Probing /cvmfs/alice.cern.ch... OK
di 7 jan 2020 19:50:25 CET: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
di 7 jan 2020 19:50:25 CET: 2.5.2.0 2336 0 24484 58861 3 1 2305387 4194304 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
di 7 jan 2020 19:50:25 CET: CVMFS is ok
di 7 jan 2020 19:50:25 CET: System is not Red Hat/CentOS 7, singularity is required
di 7 jan 2020 19:50:25 CET: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
di 7 jan 2020 19:50:25 CET: Checking for singularity binary...
di 7 jan 2020 19:50:25 CET: Singularity is not installed, using version from CVMFS
di 7 jan 2020 19:50:25 CET: Checking singularity works with /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
di 7 jan 2020 19:51:10 CET: [34mINFO: [0m Convert SIF file to sandbox... LinAH125 [34mINFO: [0m Cleaning up image...
di 7 jan 2020 19:51:10 CET: Singularity works
di 7 jan 2020 19:51:20 CET: Set ATHENA_PROC_NUMBER=4
di 7 jan 2020 19:51:20 CET: Starting ATLAS job with PandaID=4002876565
di 7 jan 2020 19:51:20 CET: Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /var/lib/boinc-client/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
di 7 jan 2020 20:36:06 CET: *** The last 200 lines of the pilot log: ***
di 7 jan 2020 20:36:06 CET: "postExe": {
di 7 jan 2020 20:36:06 CET: "cpuTime": 1,
di 7 jan 2020 20:36:06 CET: "wallTime": 1
di 7 jan 2020 20:36:06 CET: },
di 7 jan 2020 20:36:06 CET: "preExe": {
di 7 jan 2020 20:36:06 CET: "cpuTime": 1,
di 7 jan 2020 20:36:06 CET: "wallTime": 4
di 7 jan 2020 20:36:06 CET: },
di 7 jan 2020 20:36:06 CET: "total": {
di 7 jan 2020 20:36:06 CET: "cpuTime": 84,
di 7 jan 2020 20:36:06 CET: "wallTime": 154
di 7 jan 2020 20:36:06 CET: },
di 7 jan 2020 20:36:06 CET: "validation": {
di 7 jan 2020 20:36:06 CET: "cpuTime": 0,
di 7 jan 2020 20:36:06 CET: "wallTime": 0
di 7 jan 2020 20:36:06 CET: },
di 7 jan 2020 20:36:06 CET: "wallTime": 149
di 7 jan 2020 20:36:06 CET: }
di 7 jan 2020 20:36:06 CET: },
di 7 jan 2020 20:36:06 CET: "machine": {
di 7 jan 2020 20:36:06 CET: "cpu_family": "6",
di 7 jan 2020 20:36:06 CET: "linux_distribution": [
di 7 jan 2020 20:36:06 CET: "CentOS Linux",
di 7 jan 2020 20:36:06 CET: "7.6.1810",
di 7 jan 2020 20:36:06 CET: "Core"
di 7 jan 2020 20:36:06 CET: ],
di 7 jan 2020 20:36:06 CET: "model": "42",
di 7 jan 2020 20:36:06 CET: "model_name": "Intel(R) Core(TM) i7-2600 CPU @ 3.40GHz",
di 7 jan 2020 20:36:06 CET: "node": "LinAH125",
di 7 jan 2020 20:36:06 CET: "platform": "Linux-4.18.0-15-generic-x86_64-with-centos-7.6.1810-Core"
di 7 jan 2020 20:36:06 CET: },
di 7 jan 2020 20:36:06 CET: "transform": {
di 7 jan 2020 20:36:06 CET: "cpuEfficiency": 0.6446,
di 7 jan 2020 20:36:06 CET: "cpuPWEfficiency": 0.673,
di 7 jan 2020 20:36:06 CET: "cpuTime": 10,
di 7 jan 2020 20:36:06 CET: "cpuTimeTotal": 6348,
di 7 jan 2020 20:36:06 CET: "externalCpuTime": 30,
di 7 jan 2020 20:36:06 CET: "processedEvents": 10,
di 7 jan 2020 20:36:06 CET: "trfPredata": null,
di 7 jan 2020 20:36:06 CET: "wallTime": 2422
di 7 jan 2020 20:36:06 CET: }
di 7 jan 2020 20:36:06 CET: }
di 7 jan 2020 20:36:06 CET: }
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,722 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,722 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,723 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,723 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,723 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,723 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,723 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,724 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -351885901 B to job metrics
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,724 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,725 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,725 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -295.41 B/s (using 35 data points, chi2=3766833)
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,726 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=3 nEvents=10 leak=-295.41 chi2=3766833"
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,726 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,727 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,728 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 41337, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 48008780, 'wtime': 2490, 'rss': 9749904, 'write_bytes': 0, 'vmem': 14028880, 'read_bytes': 0, 'stime': 103, 'tx_bytes': 30403952, 'pss': 2574554, 'wchar': 0, 'rchar': 0, 'tx_packets': 28612, 'swap': 0, 'utime': 6246}, 'Avg': {'write_bytes': 0, 'nprocs': 7, 'nthreads': 0, 'rx_bytes': 19278, 'rx_packets': 16, 'vmem': 9343217, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 12209, 'pss': 1959946, 'wchar': 0, 'rchar': 0, 'tx_packets': 11, 'rss': 6288649}}
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,728 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,728 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,729 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,729 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,729 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,729 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 2 s
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,730 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,730 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 2 s
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,730 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,730 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 2552 s
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,730 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 3 s
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,731 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,732 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc-client/slots/0/heartbeat.json
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,732 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:54,732 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:55,222 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:55,222 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:55,222 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:55,223 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
di 7 jan 2020 20:36:06 CET: 2020-01-07 19:35:55,223 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-39827-27103
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,223 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,223 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,224 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,224 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,224 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,224 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,224 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,225 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,225 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 6348 s
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,225 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,225 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,226 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 9939
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,226 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 9939
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,226 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 4
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,226 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,226 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,226 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,226 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,227 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,228 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,229 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,229 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,229 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:55,239 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:56,241 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [9939]
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:56,241 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 9939
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:56,241 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,746 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,746 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=9939
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,823 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [9939] (in reverse order)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,871 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,872 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,872 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,872 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
di 7 jan 2020 20:36:07 CET: mpi4py not found
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,879 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,879 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,879 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,879 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,880 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:57,880 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,019 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
di 7 jan 2020 20:36:07 CET: LSB Version: :core-4.1-amd64:core-4.1-noarch
di 7 jan 2020 20:36:07 CET: Distributor ID: CentOS
di 7 jan 2020 20:36:07 CET: Description: CentOS Linux release 7.6.1810 (Core)
di 7 jan 2020 20:36:07 CET: Release: 7.6.1810
di 7 jan 2020 20:36:07 CET: Codename: Core
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,020 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,522 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,544 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (10589569024 B)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,544 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,545 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,562 | WARNING | monitor | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,562 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,581 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,723 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,723 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,723 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,770 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:58,771 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,065 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,119 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,142 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,142 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,231 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,231 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,483 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,483 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140091178882880)>, <ExcThread(job, started 140091016726272)>, <ExcThread(job_monitor, started 140090584049408)>, <ExcThread(copytool_out, started 140090974762752)>, <ExcThread(queue_monitoring, started 140090626012928)>, <ExcThread(queue_monitor, started 140090022033152)>]
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,588 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,748 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,748 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,879 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:35:59,879 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:00,232 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:00,489 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:00,489 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140091178882880)>, <ExcThread(job_monitor, started 140090584049408)>, <ExcThread(queue_monitoring, started 140090626012928)>]
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:03,237 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:03,513 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:03,514 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140091178882880)>, <ExcThread(job_monitor, started 140090584049408)>]
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:03,929 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 74 s)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:03,929 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04,516 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04,516 | INFO | MainThread | root | wrap_up | traces error code: 0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04,516 | INFO | MainThread | root | wrap_up | pilot has finished
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] ==== pilot stdout END ====
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] ==== wrapper stdout RESUME ====
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] Pilot exit status: 0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] STATUSCODE: 0
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] apfmon messages muted
di 7 jan 2020 20:36:07 CET: ---- find pandaID.out ----
di 7 jan 2020 20:36:07 CET: total 64
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 11357 Jul 25 16:38 LICENSE
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 2212 Nov 14 11:01 README.md
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 221 Jul 25 16:38 TODO.md
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 11 Jan 7 19:53 pandaIDs.out
di 7 jan 2020 20:36:07 CET: drwx------ 14 boinc boinc 4096 Jan 7 19:52 pilot
di 7 jan 2020 20:36:07 CET: -rwx------ 1 boinc boinc 21225 Dec 12 19:00 pilot.py
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 766 Oct 10 16:01 setup.py
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 11 Jan 7 19:53 /var/lib/boinc-client/slots/0/pilot2/pandaIDs.out
di 7 jan 2020 20:36:07 CET: 4002876565
di 7 jan 2020 20:36:07 CET:
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] Test setup, not cleaning
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] ==== wrapper stdout END ====
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] ==== wrapper stderr END ====
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] wrapper wrapperexiting ec=0, duration=2626
di 7 jan 2020 20:36:07 CET: 2020-01-07 19:36:04 UTC [wrapper] apfmon messages muted
di 7 jan 2020 20:36:07 CET: *** Error codes and diagnostics ***
di 7 jan 2020 20:36:07 CET: "exeErrorCode": 0,
di 7 jan 2020 20:36:07 CET: "exeErrorDiag": "",
di 7 jan 2020 20:36:07 CET: "pilotErrorCode": 0,
di 7 jan 2020 20:36:07 CET: "pilotErrorDiag": "",
di 7 jan 2020 20:36:07 CET: *** Listing of results directory ***
di 7 jan 2020 20:36:07 CET: total 379364
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 267260 jan 7 14:27 pilot2.tar.gz
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 4492 jan 7 14:56 queuedata.json
di 7 jan 2020 20:36:07 CET: -rwx------ 1 boinc boinc 12641 jan 7 14:56 runpilot2-wrapper.sh
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 107 jan 7 19:45 wrapper_26015_x86_64-pc-linux-gnu
di 7 jan 2020 20:36:07 CET: -rwxr-xr-x 1 boinc boinc 5551 jan 7 19:45 run_atlas
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 112 jan 7 19:45 job.xml
di 7 jan 2020 20:36:07 CET: drwxrwx--x 2 boinc boinc 4096 jan 7 19:45 shared
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 0 jan 7 19:45 boinc_lockfile
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 5876 jan 7 19:50 init_data.xml
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 365251149 jan 7 19:51 EVNT.14296418._001447.pool.root.1
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 275418 jan 7 19:51 input.tar.gz
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 815 jan 7 19:51 RTE.tar.gz
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 8505 jan 7 19:51 start_atlas.sh
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 2938 jan 7 19:51 pandaJob.out
di 7 jan 2020 20:36:07 CET: drwxr-xr-x 3 boinc boinc 4096 jan 7 19:52 APPS
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 3685726 jan 7 19:52 agis_schedconf.cvmfs.json
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 7737547 jan 7 19:52 agis_ddmendpoints.json
di 7 jan 2020 20:36:07 CET: drwx------ 3 boinc boinc 4096 jan 7 19:53 pilot2
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 535 jan 7 20:24 boinc_task_state.xml
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 9091213 jan 7 20:34 HITS.000649-39827-27103._078090.pool.root.1
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 789 jan 7 20:35 memory_monitor_summary.json
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 741068 jan 7 20:35 log.000649-39827-27103._078090.job.log.tgz.1
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 8192 jan 7 20:35 boinc_mmap_file
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 26 jan 7 20:35 wrapper_checkpoint.txt
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 10963 jan 7 20:35 heartbeat.json
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 7809 jan 7 20:36 pilotlog.txt
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 237618 jan 7 20:36 log.000649-39827-27103._078090.job.log.1
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 501 jan 7 20:36 uF9MDmzW48vnShfckohDCDFpABFKDmABFKDmyiALDmsDFKDmZD6Jgm.diag
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 493 jan 7 20:36 output.list
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 736 jan 7 20:36 runtime_log
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 1003520 jan 7 20:36 result.tar.gz
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 7362 jan 7 20:36 runtime_log.err
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 4294 jan 7 20:36 stderr.txt
di 7 jan 2020 20:36:07 CET: HITS file was successfully produced:
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 9091213 jan 7 20:34 shared/HITS.pool.root.1
di 7 jan 2020 20:36:07 CET: *** Contents of shared directory: ***
di 7 jan 2020 20:36:07 CET: total 366844
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 815 jan 7 19:45 RTE.tar.gz
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 275418 jan 7 19:45 input.tar.gz
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 365251149 jan 7 19:45 ATLAS.root_0
di 7 jan 2020 20:36:07 CET: -rw-r--r-- 1 boinc boinc 8505 jan 7 19:45 start_atlas.sh
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 9091213 jan 7 20:34 HITS.pool.root.1
di 7 jan 2020 20:36:07 CET: -rw------- 1 boinc boinc 1003520 jan 7 20:36 result.tar.gz
20:36:07 (2080): run_atlas exited; CPU time 6276.013454
20:36:07 (2080): called boinc_finish(0)
</stderr_txt>
]]>
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