| Name | qZ3LDm4toDwnShfckohDCDFpABFKDmABFKDmyiALDm4DFKDmG37FUn_0 |
| Workunit | 1973444 |
| Created | 20 Jan 2020, 16:16:45 UTC |
| Sent | 20 Jan 2020, 18:25:29 UTC |
| Report deadline | 27 Jan 2020, 18:25:29 UTC |
| Received | 20 Jan 2020, 19:09:21 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 4064 |
| Run time | 42 min 33 sec |
| CPU time | 59 min 24 sec |
| Validate state | Valid |
| Credit | 14.81 |
| Device peak FLOPS | 2.51 GFLOPS |
| Application version | ATLAS Simulation v1.00 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.80 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 721.79 MB |
Stderr output
<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
19:26:37 (2389): wrapper (7.7.26015): starting
19:26:37 (2389): wrapper: running run_atlas (--nthreads 2)
Mo 20. Jan 19:26:37 CET 2020: Arguments: --nthreads 2
Mo 20. Jan 19:26:37 CET 2020: Threads: 2
Mo 20. Jan 19:26:37 CET 2020: Checking for CVMFS
Mo 20. Jan 19:26:37 CET 2020: Probing /cvmfs/atlas.cern.ch... OK
Mo 20. Jan 19:26:37 CET 2020: Probing /cvmfs/atlas-condb.cern.ch... OK
Mo 20. Jan 19:26:37 CET 2020: Probing /cvmfs/grid.cern.ch... OK
Mo 20. Jan 19:26:37 CET 2020: Probing /cvmfs/cernvm-prod.cern.ch... OK
Mo 20. Jan 19:26:37 CET 2020: Probing /cvmfs/sft.cern.ch... OK
Mo 20. Jan 19:26:37 CET 2020: Probing /cvmfs/alice.cern.ch... OK
Mo 20. Jan 19:26:38 CET 2020: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
Mo 20. Jan 19:26:38 CET 2020: 2.7.0.0 8218 17196 56720 59399 0 61 2902605 4194305 525 65024 5 1906118 99.5952 8283805 3115 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
Mo 20. Jan 19:26:38 CET 2020: CVMFS is ok
Mo 20. Jan 19:26:38 CET 2020: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
Mo 20. Jan 19:26:38 CET 2020: Checking for singularity binary...
Mo 20. Jan 19:26:38 CET 2020: Using singularity found in PATH at /usr/bin/singularity
Mo 20. Jan 19:26:38 CET 2020: Running /usr/bin/singularity --version
Mo 20. Jan 19:26:38 CET 2020: singularity version 3.5.2-1.1.el7
Mo 20. Jan 19:26:38 CET 2020: Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
Mo 20. Jan 19:26:38 CET 2020: FX8S
Mo 20. Jan 19:26:38 CET 2020: Singularity works
Mo 20. Jan 19:26:39 CET 2020: Set ATHENA_PROC_NUMBER=2
Mo 20. Jan 19:26:39 CET 2020: Starting ATLAS job with PandaID=4002876565
Mo 20. Jan 19:26:39 CET 2020: Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
Mo 20. Jan 20:09:08 CET 2020: *** The last 200 lines of the pilot log: ***
Mo 20. Jan 20:09:08 CET 2020: "wallTime": 1
Mo 20. Jan 20:09:08 CET 2020: },
Mo 20. Jan 20:09:08 CET 2020: "preExe": {
Mo 20. Jan 20:09:08 CET 2020: "cpuTime": 2,
Mo 20. Jan 20:09:08 CET 2020: "wallTime": 5
Mo 20. Jan 20:09:08 CET 2020: },
Mo 20. Jan 20:09:08 CET 2020: "total": {
Mo 20. Jan 20:09:08 CET 2020: "cpuTime": 112,
Mo 20. Jan 20:09:08 CET 2020: "wallTime": 211
Mo 20. Jan 20:09:08 CET 2020: },
Mo 20. Jan 20:09:08 CET 2020: "validation": {
Mo 20. Jan 20:09:08 CET 2020: "cpuTime": 0,
Mo 20. Jan 20:09:08 CET 2020: "wallTime": 0
Mo 20. Jan 20:09:08 CET 2020: },
Mo 20. Jan 20:09:08 CET 2020: "wallTime": 204
Mo 20. Jan 20:09:08 CET 2020: }
Mo 20. Jan 20:09:08 CET 2020: },
Mo 20. Jan 20:09:08 CET 2020: "machine": {
Mo 20. Jan 20:09:08 CET 2020: "cpu_family": "21",
Mo 20. Jan 20:09:08 CET 2020: "linux_distribution": [
Mo 20. Jan 20:09:08 CET 2020: "CentOS Linux",
Mo 20. Jan 20:09:08 CET 2020: "7.6.1810",
Mo 20. Jan 20:09:08 CET 2020: "Core"
Mo 20. Jan 20:09:08 CET 2020: ],
Mo 20. Jan 20:09:08 CET 2020: "model": "2",
Mo 20. Jan 20:09:08 CET 2020: "model_name": "AMD FX-8370E Eight-Core Processor",
Mo 20. Jan 20:09:08 CET 2020: "node": "FX8S",
Mo 20. Jan 20:09:08 CET 2020: "platform": "Linux-3.10.0-1062.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
Mo 20. Jan 20:09:08 CET 2020: },
Mo 20. Jan 20:09:08 CET 2020: "transform": {
Mo 20. Jan 20:09:08 CET 2020: "cpuEfficiency": 0.7443,
Mo 20. Jan 20:09:08 CET 2020: "cpuPWEfficiency": 0.7697,
Mo 20. Jan 20:09:08 CET 2020: "cpuTime": 11,
Mo 20. Jan 20:09:08 CET 2020: "cpuTimeTotal": 3671,
Mo 20. Jan 20:09:08 CET 2020: "externalCpuTime": 22,
Mo 20. Jan 20:09:08 CET 2020: "processedEvents": 10,
Mo 20. Jan 20:09:08 CET 2020: "trfPredata": null,
Mo 20. Jan 20:09:08 CET 2020: "wallTime": 2384
Mo 20. Jan 20:09:08 CET 2020: }
Mo 20. Jan 20:09:08 CET 2020: }
Mo 20. Jan 20:09:08 CET 2020: }
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,034 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,034 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,034 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,035 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,035 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,035 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,035 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,035 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -353225293 B to job metrics
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,036 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,036 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,037 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -302.83 B/s (using 33 data points, chi2=3457657)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,037 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=2 actualCoreCount=2 nEvents=10 leak=-302.83 chi2=3457657"
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,037 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,038 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,039 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 114118, 'nprocs': 9, 'nthreads': 1, 'rx_bytes': 77929513, 'wtime': 2400, 'rss': 5700760, 'write_bytes': 20688896, 'vmem': 8680792, 'read_bytes': 3362309120, 'stime': 78, 'tx_bytes': 141694456, 'pss': 2239853, 'wchar': 27001222, 'rchar': 1105733414, 'tx_packets': 118101, 'swap': 0, 'utime': 3536}, 'Avg': {'write_bytes': 8620, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 32469, 'rx_packets': 47, 'vmem': 6586476, 'read_bytes': 1400915, 'swap': 0, 'tx_bytes': 59037, 'pss': 1806268, 'wchar': 11250, 'rchar': 460706, 'tx_packets': 49, 'rss': 4149272}}
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,039 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 2 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 2 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 2451 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,040 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 3 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,041 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,041 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc/slots/0/heartbeat.json
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,041 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,042 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,143 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-196749-32060
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,144 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 3632 s
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 9283
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 9283
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 2
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,145 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,146 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,147 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,148 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,148 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,148 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,148 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:14,156 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:15,163 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [9283]
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:15,163 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 9283
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:15,163 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,169 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,169 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=9283
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,253 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [9283] (in reverse order)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,309 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,310 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,310 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,310 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
Mo 20. Jan 20:09:08 CET 2020: mpi4py not found
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,315 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,315 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,315 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,315 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,316 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,316 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,443 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
Mo 20. Jan 20:09:08 CET 2020: LSB Version: :core-4.1-amd64:core-4.1-noarch
Mo 20. Jan 20:09:08 CET 2020: Distributor ID: CentOS
Mo 20. Jan 20:09:08 CET 2020: Description: CentOS Linux release 7.6.1810 (Core)
Mo 20. Jan 20:09:08 CET 2020: Release: 7.6.1810
Mo 20. Jan 20:09:08 CET 2020: Codename: Core
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,443 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,945 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/0
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,974 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (11356078080 B)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,974 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:16,975 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,016 | WARNING | monitor | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,016 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,025 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,079 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,156 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,458 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,459 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,583 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,645 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,645 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,650 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,826 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,826 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,841 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 9 threads
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:17,842 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140068971611968)>, <ExcThread(validate_pre, started 140068261975808)>, <ExcThread(queue_monitoring, started 140068758112000)>, <ExcThread(copytool_in, started 140068245190400)>, <ExcThread(queue_monitor, started 140068228404992)>, <ExcThread(copytool_out, started 140068783290112)>, <ExcThread(validate_post, started 140068236797696)>, <ExcThread(job_monitor, started 140068253583104)>, <ExcThread(validate, started 140068800075520)>]
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:18,029 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:18,150 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:18,154 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:18,156 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:18,158 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:18,847 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:18,848 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140068971611968)>, <ExcThread(queue_monitoring, started 140068758112000)>, <ExcThread(queue_monitor, started 140068228404992)>, <ExcThread(job_monitor, started 140068253583104)>]
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:19,077 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:19,077 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:19,853 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:19,853 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140068971611968)>, <ExcThread(queue_monitoring, started 140068758112000)>, <ExcThread(job_monitor, started 140068253583104)>]
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:20,087 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:20,859 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:08:20,859 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140068971611968)>, <ExcThread(job_monitor, started 140068253583104)>]
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:09:08,041 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
Mo 20. Jan 20:09:08 CET 2020: 2020-01-20 19:09:08,041 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08,152 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08,153 | INFO | MainThread | root | wrap_up | traces error code: 0
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08,153 | INFO | MainThread | root | wrap_up | pilot has finished
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] ==== pilot stdout END ====
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] ==== wrapper stdout RESUME ====
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] Pilot exit status: 0
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] STATUSCODE: 0
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] apfmon messages muted
Mo 20. Jan 20:09:09 CET 2020: ---- find pandaID.out ----
Mo 20. Jan 20:09:09 CET 2020: total 60
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 11357 Jul 25 16:38 LICENSE
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 2212 Nov 14 11:01 README.md
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 221 Jul 25 16:38 TODO.md
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 11 Jan 20 19:27 pandaIDs.out
Mo 20. Jan 20:09:09 CET 2020: drwx------. 14 boinc boinc 216 Jan 20 19:26 pilot
Mo 20. Jan 20:09:09 CET 2020: -rwx------. 1 boinc boinc 21225 Dec 12 19:00 pilot.py
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 766 Oct 10 16:01 setup.py
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 11 Jan 20 19:27 /var/lib/boinc/slots/0/pilot2/pandaIDs.out
Mo 20. Jan 20:09:09 CET 2020: 4002876565
Mo 20. Jan 20:09:09 CET 2020:
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] Test setup, not cleaning
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] ==== wrapper stdout END ====
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] ==== wrapper stderr END ====
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] wrapper wrapperexiting ec=0, duration=2548
Mo 20. Jan 20:09:09 CET 2020: 2020-01-20 19:09:08 UTC [wrapper] apfmon messages muted
Mo 20. Jan 20:09:09 CET 2020: *** Error codes and diagnostics ***
Mo 20. Jan 20:09:09 CET 2020: "exeErrorCode": 0,
Mo 20. Jan 20:09:09 CET 2020: "exeErrorDiag": "",
Mo 20. Jan 20:09:09 CET 2020: "pilotErrorCode": 0,
Mo 20. Jan 20:09:09 CET 2020: "pilotErrorDiag": "",
Mo 20. Jan 20:09:09 CET 2020: *** Listing of results directory ***
Mo 20. Jan 20:09:09 CET 2020: insgesamt 385316
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 267260 20. Jan 16:32 pilot2.tar.gz
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 4492 20. Jan 17:15 queuedata.json
Mo 20. Jan 20:09:09 CET 2020: -rwx------. 1 boinc boinc 12641 20. Jan 17:16 runpilot2-wrapper.sh
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 107 20. Jan 19:26 wrapper_26015_x86_64-pc-linux-gnu
Mo 20. Jan 20:09:09 CET 2020: -rwxr-xr-x. 1 boinc boinc 5557 20. Jan 19:26 run_atlas
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 112 20. Jan 19:26 job.xml
Mo 20. Jan 20:09:09 CET 2020: drwxrwx--x. 2 boinc boinc 86 20. Jan 19:26 shared
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 5902 20. Jan 19:26 init_data.xml
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 0 20. Jan 19:26 boinc_lockfile
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 20. Jan 19:26 EVNT.14296418._001447.pool.root.1
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 8509 20. Jan 19:26 start_atlas.sh
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 815 20. Jan 19:26 RTE.tar.gz
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 275413 20. Jan 19:26 input.tar.gz
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 2948 20. Jan 19:26 pandaJob.out
Mo 20. Jan 20:09:09 CET 2020: drwxr-xr-x. 3 boinc boinc 17 20. Jan 19:26 APPS
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 3698829 20. Jan 19:26 agis_schedconf.cvmfs.json
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 7781680 20. Jan 19:26 agis_ddmendpoints.json
Mo 20. Jan 20:09:09 CET 2020: drwx------. 3 boinc boinc 229 20. Jan 19:27 pilot2
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 535 20. Jan 19:57 boinc_task_state.xml
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 9055723 20. Jan 20:07 HITS.000649-196749-32060._078090.pool.root.1
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 839 20. Jan 20:08 memory_monitor_summary.json
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 519747 20. Jan 20:08 log.000649-196749-32060._078090.job.log.tgz.1
20:09:09 (2389): run_atlas exited; CPU time 3564.580670
20:09:09 (2389): called boinc_finish(0)
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 12352 20. Jan 20:08 heartbeat.json
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 8192 20. Jan 20:08 boinc_mmap_file
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 26 20. Jan 20:08 wrapper_checkpoint.txt
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 8461 20. Jan 20:09 pilotlog.txt
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 235671 20. Jan 20:09 log.000649-196749-32060._078090.job.log.1
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 487 20. Jan 20:09 qZ3LDm4toDwnShfckohDCDFpABFKDmABFKDmyiALDm4DFKDmG37FUn.diag
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 496 20. Jan 20:09 output.list
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 7089 20. Jan 20:09 runtime_log.err
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 739 20. Jan 20:09 runtime_log
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 778240 20. Jan 20:09 result.tar.gz
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 2211 20. Jan 20:09 stderr.txt
Mo 20. Jan 20:09:09 CET 2020: HITS file was successfully produced:
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 9055723 20. Jan 20:07 shared/HITS.pool.root.1
Mo 20. Jan 20:09:09 CET 2020: *** Contents of shared directory: ***
Mo 20. Jan 20:09:09 CET 2020: insgesamt 372972
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 8509 20. Jan 19:26 start_atlas.sh
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 815 20. Jan 19:26 RTE.tar.gz
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 275413 20. Jan 19:26 input.tar.gz
Mo 20. Jan 20:09:09 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 20. Jan 19:26 ATLAS.root_0
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 9055723 20. Jan 20:07 HITS.pool.root.1
Mo 20. Jan 20:09:09 CET 2020: -rw-------. 1 boinc boinc 778240 20. Jan 20:09 result.tar.gz
</stderr_txt>
]]>
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