| Name | e7ZMDmIvoDwnShfckohDCDFpABFKDmABFKDmCHaMDmABFKDmvNGmbn_0 |
| Workunit | 1973470 |
| Created | 20 Jan 2020, 16:17:50 UTC |
| Sent | 24 Jan 2020, 9:08:55 UTC |
| Report deadline | 31 Jan 2020, 9:08:55 UTC |
| Received | 24 Jan 2020, 9:54:24 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3848 |
| Run time | 42 min 50 sec |
| CPU time | 48 min 32 sec |
| Validate state | Valid |
| Credit | 40.05 |
| Device peak FLOPS | 6.73 GFLOPS |
| Application version | ATLAS Simulation v1.00 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.81 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 715.41 MB |
Stderr output
<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
10:10:00 (18221): wrapper (7.7.26015): starting
10:10:00 (18221): wrapper: running run_atlas (--nthreads 2)
Fr 24. Jan 10:10:00 CET 2020: Arguments: --nthreads 2
Fr 24. Jan 10:10:00 CET 2020: Threads: 2
Fr 24. Jan 10:10:00 CET 2020: Checking for CVMFS
Fr 24. Jan 10:10:01 CET 2020: Probing /cvmfs/atlas.cern.ch... OK
Fr 24. Jan 10:10:01 CET 2020: Probing /cvmfs/atlas-condb.cern.ch... OK
Fr 24. Jan 10:10:01 CET 2020: Probing /cvmfs/grid.cern.ch... OK
Fr 24. Jan 10:10:01 CET 2020: Probing /cvmfs/cernvm-prod.cern.ch... OK
Fr 24. Jan 10:10:02 CET 2020: Probing /cvmfs/sft.cern.ch... OK
Fr 24. Jan 10:10:06 CET 2020: Probing /cvmfs/alice.cern.ch... OK
Fr 24. Jan 10:10:06 CET 2020: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
Fr 24. Jan 10:10:06 CET 2020: 2.7.0.0 29221 287 51532 59527 1 56 306340 4194305 588 65024 0 89 -1.1236 134949 5562 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
Fr 24. Jan 10:10:06 CET 2020: CVMFS is ok
Fr 24. Jan 10:10:06 CET 2020: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
Fr 24. Jan 10:10:06 CET 2020: Checking for singularity binary...
Fr 24. Jan 10:10:06 CET 2020: Using singularity found in PATH at /usr/bin/singularity
Fr 24. Jan 10:10:06 CET 2020: Running /usr/bin/singularity --version
Fr 24. Jan 10:10:06 CET 2020: singularity version 3.5.2-1.1.el7
Fr 24. Jan 10:10:06 CET 2020: Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
Fr 24. Jan 10:10:18 CET 2020: ryzcos7
Fr 24. Jan 10:10:18 CET 2020: Singularity works
Fr 24. Jan 10:10:18 CET 2020: Set ATHENA_PROC_NUMBER=2
Fr 24. Jan 10:10:18 CET 2020: Starting ATLAS job with PandaID=4002876565
Fr 24. Jan 10:10:18 CET 2020: Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
Fr 24. Jan 10:52:49 CET 2020: *** The last 200 lines of the pilot log: ***
Fr 24. Jan 10:52:49 CET 2020: "cpuTime": 1,
Fr 24. Jan 10:52:49 CET 2020: "wallTime": 1
Fr 24. Jan 10:52:49 CET 2020: },
Fr 24. Jan 10:52:49 CET 2020: "preExe": {
Fr 24. Jan 10:52:49 CET 2020: "cpuTime": 2,
Fr 24. Jan 10:52:49 CET 2020: "wallTime": 6
Fr 24. Jan 10:52:49 CET 2020: },
Fr 24. Jan 10:52:49 CET 2020: "total": {
Fr 24. Jan 10:52:49 CET 2020: "cpuTime": 100,
Fr 24. Jan 10:52:49 CET 2020: "wallTime": 200
Fr 24. Jan 10:52:49 CET 2020: },
Fr 24. Jan 10:52:49 CET 2020: "validation": {
Fr 24. Jan 10:52:49 CET 2020: "cpuTime": 0,
Fr 24. Jan 10:52:49 CET 2020: "wallTime": 0
Fr 24. Jan 10:52:49 CET 2020: },
Fr 24. Jan 10:52:49 CET 2020: "wallTime": 193
Fr 24. Jan 10:52:49 CET 2020: }
Fr 24. Jan 10:52:49 CET 2020: },
Fr 24. Jan 10:52:49 CET 2020: "machine": {
Fr 24. Jan 10:52:49 CET 2020: "cpu_family": "23",
Fr 24. Jan 10:52:49 CET 2020: "linux_distribution": [
Fr 24. Jan 10:52:49 CET 2020: "CentOS Linux",
Fr 24. Jan 10:52:49 CET 2020: "7.6.1810",
Fr 24. Jan 10:52:49 CET 2020: "Core"
Fr 24. Jan 10:52:49 CET 2020: ],
Fr 24. Jan 10:52:49 CET 2020: "model": "8",
Fr 24. Jan 10:52:49 CET 2020: "model_name": "AMD Ryzen 7 2700 Eight-Core Processor",
Fr 24. Jan 10:52:49 CET 2020: "node": "ryzcos7",
Fr 24. Jan 10:52:49 CET 2020: "platform": "Linux-3.10.0-693.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
Fr 24. Jan 10:52:49 CET 2020: },
Fr 24. Jan 10:52:49 CET 2020: "transform": {
Fr 24. Jan 10:52:49 CET 2020: "cpuEfficiency": 0.6515,
Fr 24. Jan 10:52:49 CET 2020: "cpuPWEfficiency": 0.6764,
Fr 24. Jan 10:52:49 CET 2020: "cpuTime": 14,
Fr 24. Jan 10:52:49 CET 2020: "cpuTimeTotal": 3017,
Fr 24. Jan 10:52:49 CET 2020: "externalCpuTime": 17,
Fr 24. Jan 10:52:49 CET 2020: "processedEvents": 10,
Fr 24. Jan 10:52:49 CET 2020: "trfPredata": null,
Fr 24. Jan 10:52:49 CET 2020: "wallTime": 2237
Fr 24. Jan 10:52:49 CET 2020: }
Fr 24. Jan 10:52:49 CET 2020: }
Fr 24. Jan 10:52:49 CET 2020: }
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,801 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,801 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,801 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,801 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,801 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,801 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,802 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,802 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -353102413 B to job metrics
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,803 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,803 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,804 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 144.35 B/s (using 31 data points, chi2=6677492)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,804 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=2 actualCoreCount=2 nEvents=10 leak=144.35 chi2=6677492"
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,804 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,805 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,806 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 309194, 'nprocs': 10, 'nthreads': 1, 'rx_bytes': 431527212, 'wtime': 2347, 'rss': 5727408, 'write_bytes': 24678400, 'vmem': 8740148, 'read_bytes': 3004421120, 'stime': 106, 'tx_bytes': 29053920, 'pss': 2333142, 'wchar': 31036978, 'rchar': 1088670474, 'tx_packets': 51805, 'swap': 0, 'utime': 2868}, 'Avg': {'write_bytes': 10514, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 183857, 'rx_packets': 131, 'vmem': 5741983, 'read_bytes': 1280067, 'swap': 0, 'tx_bytes': 12378, 'pss': 1635485, 'wchar': 13223, 'rchar': 463840, 'tx_packets': 22, 'rss': 3522978}}
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 2 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,807 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 2 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,808 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 1 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,808 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 2416 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,808 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 3 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,808 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,819 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc/slots/0/heartbeat.json
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,819 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,819 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,863 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,863 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,863 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-197820-29769
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,864 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 2996 s
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 25250
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 25250
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 2
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,865 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,866 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,867 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,868 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,868 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,868 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:19,873 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:20,880 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [25250]
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:20,881 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 25250
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:20,881 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,887 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,887 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=25250
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,947 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [25250] (in reverse order)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,987 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,987 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,987 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,987 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
Fr 24. Jan 10:52:49 CET 2020: mpi4py not found
10:52:49 (18221): run_atlas exited; CPU time 2912.492067
10:52:49 (18221): called boinc_finish(0)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,993 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,994 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,994 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,994 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,994 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:21,994 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,123 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
Fr 24. Jan 10:52:49 CET 2020: LSB Version: :core-4.1-amd64:core-4.1-noarch
Fr 24. Jan 10:52:49 CET 2020: Distributor ID: CentOS
Fr 24. Jan 10:52:49 CET 2020: Description: CentOS Linux release 7.6.1810 (Core)
Fr 24. Jan 10:52:49 CET 2020: Release: 7.6.1810
Fr 24. Jan 10:52:49 CET 2020: Codename: Core
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,124 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,630 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,653 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (7371489280 B)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,654 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,654 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,672 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,677 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,783 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,783 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,958 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,974 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:22,974 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,189 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,226 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,232 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,486 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,486 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,587 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 8 threads
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,587 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140023550789440)>, <ExcThread(validate_post, started 140022955099904)>, <ExcThread(failed_post, started 140022946707200)>, <ExcThread(queue_monitor, started 140022242080512)>, <ExcThread(copytool_out, started 140023362930432)>, <ExcThread(execute_payloads, started 140022938314496)>, <ExcThread(job_monitor, started 140022929921792)>, <ExcThread(queue_monitoring, started 140023329359616)>]
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,675 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,692 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,718 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:23,960 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:24,603 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:24,603 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140023550789440)>, <ExcThread(queue_monitor, started 140022242080512)>, <ExcThread(job_monitor, started 140022929921792)>, <ExcThread(queue_monitoring, started 140023329359616)>]
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:24,884 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:24,885 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:25,608 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:25,608 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140023550789440)>, <ExcThread(job_monitor, started 140022929921792)>, <ExcThread(queue_monitoring, started 140023329359616)>]
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:25,798 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:28,801 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:29,625 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:29,625 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140023550789440)>, <ExcThread(job_monitor, started 140022929921792)>]
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48,052 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48,052 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48,768 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48,769 | INFO | MainThread | root | wrap_up | traces error code: 0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48,769 | INFO | MainThread | root | wrap_up | pilot has finished
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] ==== pilot stdout END ====
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] ==== wrapper stdout RESUME ====
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] Pilot exit status: 0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] STATUSCODE: 0
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] apfmon messages muted
Fr 24. Jan 10:52:49 CET 2020: ---- find pandaID.out ----
Fr 24. Jan 10:52:49 CET 2020: total 60
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 11357 Jul 25 2019 LICENSE
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 2212 Nov 14 11:01 README.md
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 221 Jul 25 2019 TODO.md
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 11 Jan 24 10:11 pandaIDs.out
Fr 24. Jan 10:52:49 CET 2020: drwx------. 14 boinc boinc 216 Jan 24 10:11 pilot
Fr 24. Jan 10:52:49 CET 2020: -rwx------. 1 boinc boinc 21225 Dec 12 19:00 pilot.py
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 766 Oct 10 16:01 setup.py
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 11 Jan 24 10:11 /var/lib/boinc/slots/0/pilot2/pandaIDs.out
Fr 24. Jan 10:52:49 CET 2020: 4002876565
Fr 24. Jan 10:52:49 CET 2020:
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] Test setup, not cleaning
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] ==== wrapper stdout END ====
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] ==== wrapper stderr END ====
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] wrapper wrapperexiting ec=0, duration=2539
Fr 24. Jan 10:52:49 CET 2020: 2020-01-24 09:52:48 UTC [wrapper] apfmon messages muted
Fr 24. Jan 10:52:49 CET 2020: *** Error codes and diagnostics ***
Fr 24. Jan 10:52:49 CET 2020: "exeErrorCode": 0,
Fr 24. Jan 10:52:49 CET 2020: "exeErrorDiag": "",
Fr 24. Jan 10:52:49 CET 2020: "pilotErrorCode": 0,
Fr 24. Jan 10:52:49 CET 2020: "pilotErrorDiag": "",
Fr 24. Jan 10:52:49 CET 2020: *** Listing of results directory ***
Fr 24. Jan 10:52:49 CET 2020: insgesamt 379060
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 267260 20. Jan 16:32 pilot2.tar.gz
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 4492 20. Jan 17:15 queuedata.json
Fr 24. Jan 10:52:49 CET 2020: -rwx------. 1 boinc boinc 12641 20. Jan 17:17 runpilot2-wrapper.sh
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 107 24. Jan 10:10 wrapper_26015_x86_64-pc-linux-gnu
Fr 24. Jan 10:52:49 CET 2020: -rwxr-xr-x. 1 boinc boinc 5557 24. Jan 10:10 run_atlas
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 112 24. Jan 10:10 job.xml
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 5993 24. Jan 10:10 init_data.xml
Fr 24. Jan 10:52:49 CET 2020: drwxrwx--x. 2 boinc boinc 86 24. Jan 10:10 shared
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 0 24. Jan 10:10 boinc_lockfile
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 24. Jan 10:10 EVNT.14296418._001447.pool.root.1
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 8549 24. Jan 10:10 start_atlas.sh
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 815 24. Jan 10:10 RTE.tar.gz
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 275410 24. Jan 10:10 input.tar.gz
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 2948 24. Jan 10:10 pandaJob.out
Fr 24. Jan 10:52:49 CET 2020: drwxr-xr-x. 3 boinc boinc 17 24. Jan 10:10 APPS
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 3662682 24. Jan 10:11 agis_schedconf.cvmfs.json
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 7844343 24. Jan 10:11 agis_ddmendpoints.json
Fr 24. Jan 10:52:49 CET 2020: drwx------. 3 boinc boinc 229 24. Jan 10:11 pilot2
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 535 24. Jan 10:44 boinc_task_state.xml
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 9176610 24. Jan 10:51 HITS.000649-197820-29769._078090.pool.root.1
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 843 24. Jan 10:52 memory_monitor_summary.json
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 516978 24. Jan 10:52 log.000649-197820-29769._078090.job.log.tgz.1
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 11696 24. Jan 10:52 heartbeat.json
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 26 24. Jan 10:52 wrapper_checkpoint.txt
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 8192 24. Jan 10:52 boinc_mmap_file
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 8239 24. Jan 10:52 pilotlog.txt
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 231300 24. Jan 10:52 log.000649-197820-29769._078090.job.log.1
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 491 24. Jan 10:52 e7ZMDmIvoDwnShfckohDCDFpABFKDmABFKDmCHaMDmABFKDmvNGmbn.diag
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 7164 24. Jan 10:52 runtime_log.err
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 496 24. Jan 10:52 output.list
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 739 24. Jan 10:52 runtime_log
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 768000 24. Jan 10:52 result.tar.gz
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 2154 24. Jan 10:52 stderr.txt
Fr 24. Jan 10:52:49 CET 2020: HITS file was successfully produced:
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 9176610 24. Jan 10:51 shared/HITS.pool.root.1
Fr 24. Jan 10:52:49 CET 2020: *** Contents of shared directory: ***
Fr 24. Jan 10:52:49 CET 2020: insgesamt 366696
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 815 24. Jan 10:10 RTE.tar.gz
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 275410 24. Jan 10:10 input.tar.gz
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 24. Jan 10:10 ATLAS.root_0
Fr 24. Jan 10:52:49 CET 2020: -rw-r--r--. 1 boinc boinc 8549 24. Jan 10:10 start_atlas.sh
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 9176610 24. Jan 10:51 HITS.pool.root.1
Fr 24. Jan 10:52:49 CET 2020: -rw-------. 1 boinc boinc 768000 24. Jan 10:52 result.tar.gz
</stderr_txt>
]]>
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