Name OLdNDm9toDwnShfckohDCDFpABFKDmABFKDmyiALDm5DFKDmulHoBo_1
Workunit 1973446
Created 20 Jan 2020, 23:58:07 UTC
Sent 21 Jan 2020, 4:42:07 UTC
Report deadline 28 Jan 2020, 4:42:07 UTC
Received 21 Jan 2020, 5:17:51 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 3848
Run time 34 min 8 sec
CPU time 39 min 21 sec
Validate state Valid
Credit 22.08
Device peak FLOPS 4.66 GFLOPS
Application version ATLAS Simulation v1.00 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.79 GB
Peak swap size 2.56 GB
Peak disk usage 721.87 MB

Stderr output

<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
05:43:28 (7912): wrapper (7.7.26015): starting
05:43:28 (7912): wrapper: running run_atlas (--nthreads 2)
Di 21. Jan 05:43:28 CET 2020: Arguments: --nthreads 2
Di 21. Jan 05:43:28 CET 2020: Threads: 2
Di 21. Jan 05:43:28 CET 2020: Checking for CVMFS
Di 21. Jan 05:43:28 CET 2020: Probing /cvmfs/atlas.cern.ch... OK
Di 21. Jan 05:43:29 CET 2020: Probing /cvmfs/atlas-condb.cern.ch... OK
Di 21. Jan 05:43:30 CET 2020: Probing /cvmfs/grid.cern.ch... OK
Di 21. Jan 05:43:31 CET 2020: Probing /cvmfs/cernvm-prod.cern.ch... OK
Di 21. Jan 05:43:31 CET 2020: Probing /cvmfs/sft.cern.ch... OK
Di 21. Jan 05:43:32 CET 2020: Probing /cvmfs/alice.cern.ch... OK
Di 21. Jan 05:43:33 CET 2020: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
Di 21. Jan 05:43:33 CET 2020: 2.7.0.0 3040 9731 82840 59420 3 61 2438135 4194304 1 65024 0 266992 98.0314 1135649 1721 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
Di 21. Jan 05:43:33 CET 2020: CVMFS is ok
Di 21. Jan 05:43:33 CET 2020: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
Di 21. Jan 05:43:33 CET 2020: Checking for singularity binary...
Di 21. Jan 05:43:33 CET 2020: Using singularity found in PATH at /usr/bin/singularity
Di 21. Jan 05:43:33 CET 2020: Running /usr/bin/singularity --version
Di 21. Jan 05:43:33 CET 2020: singularity version 3.5.2-1.1.el7
Di 21. Jan 05:43:33 CET 2020: Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
Di 21. Jan 05:43:33 CET 2020: ryzcos7
Di 21. Jan 05:43:33 CET 2020: Singularity works
Di 21. Jan 05:43:34 CET 2020: Set ATHENA_PROC_NUMBER=2
Di 21. Jan 05:43:34 CET 2020: Starting ATLAS job with PandaID=4002876565
Di 21. Jan 05:43:34 CET 2020: Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
Di 21. Jan 06:17:34 CET 2020:  *** The last 200 lines of the pilot log: ***
Di 21. Jan 06:17:34 CET 2020:           "cpuTime": 1, 
Di 21. Jan 06:17:34 CET 2020:           "wallTime": 1
Di 21. Jan 06:17:34 CET 2020:         }, 
Di 21. Jan 06:17:34 CET 2020:         "preExe": {
Di 21. Jan 06:17:34 CET 2020:           "cpuTime": 1, 
Di 21. Jan 06:17:34 CET 2020:           "wallTime": 10
Di 21. Jan 06:17:34 CET 2020:         }, 
Di 21. Jan 06:17:34 CET 2020:         "total": {
Di 21. Jan 06:17:34 CET 2020:           "cpuTime": 73, 
Di 21. Jan 06:17:34 CET 2020:           "wallTime": 214
Di 21. Jan 06:17:34 CET 2020:         }, 
Di 21. Jan 06:17:34 CET 2020:         "validation": {
Di 21. Jan 06:17:34 CET 2020:           "cpuTime": 0, 
Di 21. Jan 06:17:34 CET 2020:           "wallTime": 0
Di 21. Jan 06:17:34 CET 2020:         }, 
Di 21. Jan 06:17:34 CET 2020:         "wallTime": 203
Di 21. Jan 06:17:34 CET 2020:       }
Di 21. Jan 06:17:34 CET 2020:     }, 
Di 21. Jan 06:17:34 CET 2020:     "machine": {
Di 21. Jan 06:17:34 CET 2020:       "cpu_family": "23", 
Di 21. Jan 06:17:34 CET 2020:       "linux_distribution": [
Di 21. Jan 06:17:34 CET 2020:         "CentOS Linux", 
Di 21. Jan 06:17:34 CET 2020:         "7.6.1810", 
Di 21. Jan 06:17:34 CET 2020:         "Core"
Di 21. Jan 06:17:34 CET 2020:       ], 
Di 21. Jan 06:17:34 CET 2020:       "model": "8", 
Di 21. Jan 06:17:34 CET 2020:       "model_name": "AMD Ryzen 7 2700 Eight-Core Processor", 
Di 21. Jan 06:17:34 CET 2020:       "node": "ryzcos7", 
Di 21. Jan 06:17:34 CET 2020:       "platform": "Linux-3.10.0-693.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
Di 21. Jan 06:17:34 CET 2020:     }, 
Di 21. Jan 06:17:34 CET 2020:     "transform": {
Di 21. Jan 06:17:34 CET 2020:       "cpuEfficiency": 0.6485, 
Di 21. Jan 06:17:34 CET 2020:       "cpuPWEfficiency": 0.6728, 
Di 21. Jan 06:17:34 CET 2020:       "cpuTime": 16, 
Di 21. Jan 06:17:34 CET 2020:       "cpuTimeTotal": 2398, 
Di 21. Jan 06:17:34 CET 2020:       "externalCpuTime": 20, 
Di 21. Jan 06:17:34 CET 2020:       "processedEvents": 10, 
Di 21. Jan 06:17:34 CET 2020:       "trfPredata": null, 
Di 21. Jan 06:17:34 CET 2020:       "wallTime": 1791
Di 21. Jan 06:17:34 CET 2020:     }
Di 21. Jan 06:17:34 CET 2020:   }
Di 21. Jan 06:17:34 CET 2020: }
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,861 | DEBUG    | queue_monitor       | pilot.util.auxiliary.4002876565  | update_server             | xml:will send fileinfo
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,861 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | state=finished
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,861 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=running
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,861 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=finished
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,861 | INFO     | queue_monitor       | pilot.control.job.4002876565     | send_state                | pilot will not update the server (heartbeat message will be written to file)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,861 | INFO     | queue_monitor       | pilot.control.job.4002876565     | send_state                | job 4002876565 has finished - writing final server update
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,861 | DEBUG    | queue_monitor       | pilot.control.job.4002876565     | get_data_structure        | building data structure to be sent to server with heartbeat
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,862 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | get_job_metrics           | will not add max space = -352995917 B to job metrics
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,863 | DEBUG    | queue_monitor       | pilot.api.analytics              | get_fitted_data           | removing tails from data to be fitted
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,863 | INFO     | queue_monitor       | pilot.api.analytics              | get_fitted_data           | fitting pss+swap vs Time
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,863 | INFO     | queue_monitor       | pilot.api.analytics              | get_fitted_data           | current memory leak: -186.05 B/s (using 24 data points, chi2=3145313)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,864 | DEBUG    | queue_monitor       | pilot.util.auxiliary.4002876565  | get_job_metrics           | job metrics="coreCount=2 actualCoreCount=1 nEvents=10 leak=-186.05 chi2=3145313"
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,864 | INFO     | queue_monitor       | pilot.control.job.4002876565     | get_data_structure        | total number of processed events: 10 (read)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,865 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_values         | using path: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,866 | DEBUG    | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Max': {'rx_packets': 258996, 'nprocs': 10, 'nthreads': 1, 'rx_bytes': 341702535, 'wtime': 1878, 'rss': 5697672, 'write_bytes': 0, 'vmem': 8740100, 'read_bytes': 0, 'stime': 87, 'tx_bytes': 16105834, 'pss': 2240781, 'wchar': 0, 'rchar': 0, 'tx_packets': 110466, 'swap': 0, 'utime': 2298}, 'Avg': {'write_bytes': 0, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 181880, 'rx_packets': 137, 'vmem': 5644957, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 8572, 'pss': 1561117, 'wchar': 0, 'rchar': 0, 'tx_packets': 58, 'rss': 3403696}}
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,867 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from prmon json
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,867 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from prmon json
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,867 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | ..............................
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,867 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . Timing measurements:
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,867 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . get job = 0 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,868 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . initial setup = 2 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,868 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . payload setup = 0 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,868 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . total setup = 2 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,868 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . stage-in = 0 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,868 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . payload execution = 1950 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,868 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . stage-out = 3 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,868 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | ..............................
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,869 | DEBUG    | queue_monitor       | pilot.control.job.4002876565     | send_state                | wrote heartbeat to file /var/lib/boinc/slots/0/heartbeat.json
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,870 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | job 4002876565 was dequeued from the monitored payloads queue
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,870 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | tmp job object deleted
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,901 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | 
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,901 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | job summary report
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,901 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | --------------------------------------------------
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,901 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | PanDA job id: 4002876565
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,901 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | task id: 000649-196807-5429
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,901 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | errors: (none)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,901 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | status: LOG_TRANSFER = DONE 
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | pilot state: finished 
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | transexitcode: 0
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exeerrorcode: 0
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exeerrordiag: 
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exitcode: 0
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exitmsg: OK
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | cpuconsumptiontime: 2406 s
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | nevents: 10
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | neventsw: 0
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | pid: 15103
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | pgrp: 15103
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | corecount: 2
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,902 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | event service: False
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | --------------------------------------------------
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | 
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue jobs has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue payloads has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_in has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_out has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue current_data_in has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_jobs has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_payloads has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue monitored_payloads has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_jobs has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,903 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_payloads has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_in has 1 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_out has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_jobs has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_payloads has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_in has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_out has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobs has 0 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobids has 1 job(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.control.job.4002876565     | has_job_completed         | job 4002876565 has completed (purged errors)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,904 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | overall cleanup function is called
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:53,908 | DEBUG    | retrieve            | pilot.util.processes             | cleanup                   | work directory was removed: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:54,913 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [15103]
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:54,913 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 15103
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:54,913 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:55,917 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | collected zombie processes
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:55,918 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=15103
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,025 | INFO     | retrieve            | pilot.util.processes             | kill_processes            | process IDs to be killed: [15103] (in reverse order)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,116 | WARNING  | retrieve            | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,116 | INFO     | retrieve            | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,116 | INFO     | retrieve            | pilot.control.job                | retrieve                  | ready for new job
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,116 | INFO     | retrieve            | root                             | retrieve                  | pilot has finished for previous job - re-establishing logging
Di 21. Jan 06:17:34 CET 2020: mpi4py not found
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,140 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,140 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ***  PanDA Pilot version 2.3.4 (12)  ***
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,140 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,140 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | 
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,141 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | pilot is running in a VM
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,141 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | architecture information:
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,380 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | 
Di 21. Jan 06:17:34 CET 2020: LSB Version:	:core-4.1-amd64:core-4.1-noarch
Di 21. Jan 06:17:34 CET 2020: Distributor ID:	CentOS
Di 21. Jan 06:17:34 CET 2020: Description:	CentOS Linux release 7.6.1810 (Core) 
06:17:34 (7912): run_atlas exited; CPU time 2361.573371
06:17:34 (7912): called boinc_finish(0)
Di 21. Jan 06:17:34 CET 2020: Release:	7.6.1810
Di 21. Jan 06:17:34 CET 2020: Codename:	Core
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,380 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,886 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc/slots/0
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,904 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (9404678144 B)
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,905 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,905 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:56,953 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:57,161 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:57,162 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
Di 21. Jan 06:17:34 CET 2020: 2020-01-21 05:16:57,282 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,335 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,637 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,637 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,647 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,647 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,652 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 11 threads
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,652 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140447095785280)>, <ExcThread(validate_post, started 140446294599424)>, <ExcThread(validate, started 140446924973824)>, <ExcThread(job_monitor, started 140446302992128)>, <ExcThread(queue_monitoring, started 140446680467200)>, <ExcThread(queue_monitor, started 140446277814016)>, <ExcThread(copytool_in, started 140446286206720)>, <ExcThread(execute_payloads, started 140446261028608)>, <ExcThread(copytool_out, started 140446705645312)>, <ExcThread(validate_pre, started 140446663681792)>, <ExcThread(create_data_payload, started 140446688859904)>]
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,807 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,814 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,820 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,831 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,954 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:57,955 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:58,285 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:58,328 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:58,672 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 4 threads
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:58,672 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140447095785280)>, <ExcThread(job_monitor, started 140446302992128)>, <ExcThread(queue_monitoring, started 140446680467200)>, <ExcThread(queue_monitor, started 140446277814016)>]
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:58,893 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:58,893 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:59,677 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 3 threads
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:16:59,677 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140447095785280)>, <ExcThread(job_monitor, started 140446302992128)>, <ExcThread(queue_monitoring, started 140446680467200)>]
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:00,814 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:01,690 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 2 threads
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:01,691 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 140447095785280)>, <ExcThread(job_monitor, started 140446302992128)>]
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:33,880 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:33,880 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:33,977 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:33,977 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:33,978 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] ==== pilot stdout END ====
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] ==== wrapper stdout RESUME ====
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] Pilot exit status: 0
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] STATUSCODE: 0
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] apfmon messages muted
Di 21. Jan 06:17:35 CET 2020: ---- find pandaID.out ----
Di 21. Jan 06:17:35 CET 2020: total 60
Di 21. Jan 06:17:35 CET 2020: -rw-------.  1 boinc boinc 11357 Jul 25 16:38 LICENSE
Di 21. Jan 06:17:35 CET 2020: -rw-------.  1 boinc boinc    20 Sep  9 13:04 MANIFEST.IN
Di 21. Jan 06:17:35 CET 2020: -rw-------.  1 boinc boinc     8 Dec 12 19:00 PILOTVERSION
Di 21. Jan 06:17:35 CET 2020: -rw-------.  1 boinc boinc  2212 Nov 14 11:01 README.md
Di 21. Jan 06:17:35 CET 2020: -rw-------.  1 boinc boinc   221 Jul 25 16:38 TODO.md
Di 21. Jan 06:17:35 CET 2020: -rw-------.  1 boinc boinc    11 Jan 21 05:44 pandaIDs.out
Di 21. Jan 06:17:35 CET 2020: drwx------. 14 boinc boinc   216 Jan 21 05:43 pilot
Di 21. Jan 06:17:35 CET 2020: -rwx------.  1 boinc boinc 21225 Dec 12 19:00 pilot.py
Di 21. Jan 06:17:35 CET 2020: -rw-------.  1 boinc boinc   766 Oct 10 16:01 setup.py
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc 11 Jan 21 05:44 /var/lib/boinc/slots/0/pilot2/pandaIDs.out
Di 21. Jan 06:17:35 CET 2020: 4002876565
Di 21. Jan 06:17:35 CET 2020: 
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] Test setup, not cleaning
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] ==== wrapper stdout END ====
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] ==== wrapper stderr END ====
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] wrapper wrapperexiting ec=0, duration=2040
Di 21. Jan 06:17:35 CET 2020: 2020-01-21 05:17:34 UTC [wrapper] apfmon messages muted
Di 21. Jan 06:17:35 CET 2020:  *** Error codes and diagnostics ***
Di 21. Jan 06:17:35 CET 2020:     "exeErrorCode": 0,
Di 21. Jan 06:17:35 CET 2020:     "exeErrorDiag": "",
Di 21. Jan 06:17:35 CET 2020:     "pilotErrorCode": 0,
Di 21. Jan 06:17:35 CET 2020:     "pilotErrorDiag": "",
Di 21. Jan 06:17:35 CET 2020:  *** Listing of results directory ***
Di 21. Jan 06:17:35 CET 2020: insgesamt 379020
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc    267260 20. Jan 16:32 pilot2.tar.gz
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      4492 20. Jan 17:15 queuedata.json
Di 21. Jan 06:17:35 CET 2020: -rwx------. 1 boinc boinc     12641 20. Jan 17:16 runpilot2-wrapper.sh
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc       107 21. Jan 05:43 wrapper_26015_x86_64-pc-linux-gnu
Di 21. Jan 06:17:35 CET 2020: -rwxr-xr-x. 1 boinc boinc      5557 21. Jan 05:43 run_atlas
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc       112 21. Jan 05:43 job.xml
Di 21. Jan 06:17:35 CET 2020: drwxrwx--x. 2 boinc boinc        86 21. Jan 05:43 shared
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      5991 21. Jan 05:43 init_data.xml
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc         0 21. Jan 05:43 boinc_lockfile
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      8505 21. Jan 05:43 start_atlas.sh
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc       815 21. Jan 05:43 RTE.tar.gz
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc    275416 21. Jan 05:43 input.tar.gz
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 21. Jan 05:43 EVNT.14296418._001447.pool.root.1
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      2938 21. Jan 05:43 pandaJob.out
Di 21. Jan 06:17:35 CET 2020: drwxr-xr-x. 3 boinc boinc        17 21. Jan 05:43 APPS
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc   3699227 21. Jan 05:43 agis_schedconf.cvmfs.json
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc   7792440 21. Jan 05:43 agis_ddmendpoints.json
Di 21. Jan 06:17:35 CET 2020: drwx------. 3 boinc boinc       229 21. Jan 05:44 pilot2
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc       535 21. Jan 06:08 boinc_task_state.xml
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc   9192760 21. Jan 06:15 HITS.000649-196807-5429._078090.pool.root.1
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc       791 21. Jan 06:16 memory_monitor_summary.json
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc    513191 21. Jan 06:16 log.000649-196807-5429._078090.job.log.tgz.1
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc     11640 21. Jan 06:16 heartbeat.json
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      8192 21. Jan 06:17 boinc_mmap_file
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc        26 21. Jan 06:17 wrapper_checkpoint.txt
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc      8399 21. Jan 06:17 pilotlog.txt
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc    213428 21. Jan 06:17 log.000649-196807-5429._078090.job.log.1
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc       490 21. Jan 06:17 OLdNDm9toDwnShfckohDCDFpABFKDmABFKDmyiALDm5DFKDmulHoBo.diag
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc       493 21. Jan 06:17 output.list
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      7053 21. Jan 06:17 runtime_log.err
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc       736 21. Jan 06:17 runtime_log
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc    747520 21. Jan 06:17 result.tar.gz
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      2211 21. Jan 06:17 stderr.txt
Di 21. Jan 06:17:35 CET 2020: HITS file was successfully produced:
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc 9192760 21. Jan 06:15 shared/HITS.pool.root.1
Di 21. Jan 06:17:35 CET 2020:  *** Contents of shared directory: ***
Di 21. Jan 06:17:35 CET 2020: insgesamt 366692
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc      8505 21. Jan 05:43 start_atlas.sh
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc       815 21. Jan 05:43 RTE.tar.gz
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc    275416 21. Jan 05:43 input.tar.gz
Di 21. Jan 06:17:35 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 21. Jan 05:43 ATLAS.root_0
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc   9192760 21. Jan 06:15 HITS.pool.root.1
Di 21. Jan 06:17:35 CET 2020: -rw-------. 1 boinc boinc    747520 21. Jan 06:17 result.tar.gz

</stderr_txt>
]]>


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