Name 3PmKDm6uoDwnShfckohDCDFpABFKDmABFKDmyiALDmFEFKDm6n0Pen_1
Workunit 1973463
Created 20 Jan 2020, 23:58:07 UTC
Sent 21 Jan 2020, 10:40:26 UTC
Report deadline 28 Jan 2020, 10:40:26 UTC
Received 21 Jan 2020, 11:24:08 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4064
Run time 42 min 34 sec
CPU time 1 hours 3 min 40 sec
Validate state Valid
Credit 14.81
Device peak FLOPS 2.51 GFLOPS
Application version ATLAS Simulation v1.00 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.80 GB
Peak swap size 2.55 GB
Peak disk usage 716.76 MB

Stderr output

<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
11:41:19 (22357): wrapper (7.7.26015): starting
11:41:19 (22357): wrapper: running run_atlas (--nthreads 2)
Di 21. Jan 11:41:19 CET 2020: Arguments: --nthreads 2
Di 21. Jan 11:41:19 CET 2020: Threads: 2
Di 21. Jan 11:41:19 CET 2020: Checking for CVMFS
Di 21. Jan 11:41:19 CET 2020: Probing /cvmfs/atlas.cern.ch... OK
Di 21. Jan 11:41:20 CET 2020: Probing /cvmfs/atlas-condb.cern.ch... OK
Di 21. Jan 11:41:20 CET 2020: Probing /cvmfs/grid.cern.ch... OK
Di 21. Jan 11:41:20 CET 2020: Probing /cvmfs/cernvm-prod.cern.ch... OK
Di 21. Jan 11:41:20 CET 2020: Probing /cvmfs/sft.cern.ch... OK
Di 21. Jan 11:41:20 CET 2020: Probing /cvmfs/alice.cern.ch... OK
Di 21. Jan 11:41:21 CET 2020: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
Di 21. Jan 11:41:21 CET 2020: 2.7.0.0 8218 18170 56768 59430 1 61 2102430 4194305 0 65024 5 2256331 99.6534 8745908 3173 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
Di 21. Jan 11:41:21 CET 2020: CVMFS is ok
Di 21. Jan 11:41:21 CET 2020: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
Di 21. Jan 11:41:21 CET 2020: Checking for singularity binary...
Di 21. Jan 11:41:21 CET 2020: Using singularity found in PATH at /usr/bin/singularity
Di 21. Jan 11:41:21 CET 2020: Running /usr/bin/singularity --version
Di 21. Jan 11:41:21 CET 2020: singularity version 3.5.2-1.1.el7
Di 21. Jan 11:41:21 CET 2020: Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
Di 21. Jan 11:41:21 CET 2020: FX8S
Di 21. Jan 11:41:21 CET 2020: Singularity works
Di 21. Jan 11:41:21 CET 2020: Set ATHENA_PROC_NUMBER=2
Di 21. Jan 11:41:21 CET 2020: Starting ATLAS job with PandaID=4002876565
Di 21. Jan 11:41:21 CET 2020: Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
Di 21. Jan 12:23:51 CET 2020:  *** The last 200 lines of the pilot log: ***
Di 21. Jan 12:23:51 CET 2020:           "wallTime": 1
Di 21. Jan 12:23:51 CET 2020:         }, 
Di 21. Jan 12:23:51 CET 2020:         "preExe": {
Di 21. Jan 12:23:51 CET 2020:           "cpuTime": 2, 
Di 21. Jan 12:23:51 CET 2020:           "wallTime": 6
Di 21. Jan 12:23:51 CET 2020:         }, 
Di 21. Jan 12:23:51 CET 2020:         "total": {
Di 21. Jan 12:23:51 CET 2020:           "cpuTime": 111, 
Di 21. Jan 12:23:51 CET 2020:           "wallTime": 179
Di 21. Jan 12:23:51 CET 2020:         }, 
Di 21. Jan 12:23:51 CET 2020:         "validation": {
Di 21. Jan 12:23:51 CET 2020:           "cpuTime": 0, 
Di 21. Jan 12:23:51 CET 2020:           "wallTime": 0
Di 21. Jan 12:23:51 CET 2020:         }, 
Di 21. Jan 12:23:51 CET 2020:         "wallTime": 172
Di 21. Jan 12:23:51 CET 2020:       }
Di 21. Jan 12:23:51 CET 2020:     }, 
Di 21. Jan 12:23:51 CET 2020:     "machine": {
Di 21. Jan 12:23:51 CET 2020:       "cpu_family": "21", 
Di 21. Jan 12:23:51 CET 2020:       "linux_distribution": [
Di 21. Jan 12:23:51 CET 2020:         "CentOS Linux", 
Di 21. Jan 12:23:51 CET 2020:         "7.6.1810", 
Di 21. Jan 12:23:51 CET 2020:         "Core"
Di 21. Jan 12:23:51 CET 2020:       ], 
Di 21. Jan 12:23:51 CET 2020:       "model": "2", 
Di 21. Jan 12:23:51 CET 2020:       "model_name": "AMD FX-8370E Eight-Core Processor", 
Di 21. Jan 12:23:51 CET 2020:       "node": "FX8S", 
Di 21. Jan 12:23:51 CET 2020:       "platform": "Linux-3.10.0-1062.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
Di 21. Jan 12:23:51 CET 2020:     }, 
Di 21. Jan 12:23:51 CET 2020:     "transform": {
Di 21. Jan 12:23:51 CET 2020:       "cpuEfficiency": 0.7887, 
Di 21. Jan 12:23:51 CET 2020:       "cpuPWEfficiency": 0.8131, 
Di 21. Jan 12:23:51 CET 2020:       "cpuTime": 10, 
Di 21. Jan 12:23:51 CET 2020:       "cpuTimeTotal": 3919, 
Di 21. Jan 12:23:51 CET 2020:       "externalCpuTime": 30, 
Di 21. Jan 12:23:51 CET 2020:       "processedEvents": 10, 
Di 21. Jan 12:23:51 CET 2020:       "trfPredata": null, 
Di 21. Jan 12:23:51 CET 2020:       "wallTime": 2402
Di 21. Jan 12:23:51 CET 2020:     }
Di 21. Jan 12:23:51 CET 2020:   }
Di 21. Jan 12:23:51 CET 2020: }
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,742 | DEBUG    | queue_monitor       | pilot.util.auxiliary.4002876565  | update_server             | xml:will send fileinfo
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,742 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | state=finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,742 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=running
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,742 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,742 | INFO     | queue_monitor       | pilot.control.job.4002876565     | send_state                | pilot will not update the server (heartbeat message will be written to file)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,743 | INFO     | queue_monitor       | pilot.control.job.4002876565     | send_state                | job 4002876565 has finished - writing final server update
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,743 | DEBUG    | queue_monitor       | pilot.control.job.4002876565     | get_data_structure        | building data structure to be sent to server with heartbeat
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,743 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | get_job_metrics           | will not add max space = -352078413 B to job metrics
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,744 | DEBUG    | queue_monitor       | pilot.api.analytics              | get_fitted_data           | removing tails from data to be fitted
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,744 | INFO     | queue_monitor       | pilot.api.analytics              | get_fitted_data           | fitting pss+swap vs Time
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,745 | INFO     | queue_monitor       | pilot.api.analytics              | get_fitted_data           | current memory leak: -171.44 B/s (using 33 data points, chi2=1316944)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,745 | DEBUG    | queue_monitor       | pilot.util.auxiliary.4002876565  | get_job_metrics           | job metrics="coreCount=2 actualCoreCount=2 nEvents=10 leak=-171.44 chi2=1316944"
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,745 | INFO     | queue_monitor       | pilot.control.job.4002876565     | get_data_structure        | total number of processed events: 10 (read)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,746 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_values         | using path: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,748 | DEBUG    | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Max': {'rx_packets': 37849, 'nprocs': 7, 'nthreads': 1, 'rx_bytes': 20848937, 'wtime': 2395, 'rss': 5703356, 'write_bytes': 14979072, 'vmem': 8672176, 'read_bytes': 3046945792, 'stime': 81, 'tx_bytes': 10719524, 'pss': 2246049, 'wchar': 21298545, 'rchar': 1103181626, 'tx_packets': 24898, 'swap': 0, 'utime': 3776}, 'Avg': {'write_bytes': 6252, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 8703, 'rx_packets': 15, 'vmem': 6883251, 'read_bytes': 1271935, 'swap': 0, 'tx_bytes': 4474, 'pss': 1879276, 'wchar': 8890, 'rchar': 460518, 'tx_packets': 10, 'rss': 4391423}}
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,748 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from prmon json
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,748 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from prmon json
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,748 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | ..............................
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,748 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . Timing measurements:
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . get job = 0 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . initial setup = 1 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . payload setup = 0 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . total setup = 1 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . stage-in = 0 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . payload execution = 2454 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | . stage-out = 3 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,749 | INFO     | queue_monitor       | pilot.util.auxiliary.4002876565  | timing_report             | ..............................
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,750 | DEBUG    | queue_monitor       | pilot.control.job.4002876565     | send_state                | wrote heartbeat to file /var/lib/boinc/slots/0/heartbeat.json
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,750 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | job 4002876565 was dequeued from the monitored payloads queue
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:49,751 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | tmp job object deleted
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,061 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | 
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,061 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | job summary report
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,062 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | --------------------------------------------------
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,062 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | PanDA job id: 4002876565
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,062 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | task id: 000649-197481-27293
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,062 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | errors: (none)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,062 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | status: LOG_TRANSFER = DONE 
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,062 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | pilot state: finished 
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,063 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | transexitcode: 0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,063 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exeerrorcode: 0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,063 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exeerrordiag: 
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,063 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exitcode: 0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,063 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | exitmsg: OK
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,063 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | cpuconsumptiontime: 3879 s
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,063 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | nevents: 10
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,064 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | neventsw: 0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,064 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | pid: 28951
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,064 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | pgrp: 28951
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,064 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | corecount: 2
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,064 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | event service: False
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,064 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | --------------------------------------------------
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.auxiliary.4002876565  | make_job_report           | 
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue jobs has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue payloads has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_in has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_out has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue current_data_in has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_jobs has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_payloads has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue monitored_payloads has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,065 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_jobs has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,066 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_payloads has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,066 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_in has 1 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,066 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_out has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,066 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_jobs has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,066 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_payloads has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,066 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_in has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,066 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_out has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,067 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobs has 0 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,067 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobids has 1 job(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,067 | INFO     | retrieve            | pilot.control.job.4002876565     | has_job_completed         | job 4002876565 has completed (purged errors)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,067 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | overall cleanup function is called
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:50,073 | DEBUG    | retrieve            | pilot.util.processes             | cleanup                   | work directory was removed: /var/lib/boinc/slots/0/PanDA_Pilot-4002876565
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:51,079 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [28951]
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:51,079 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 28951
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:51,079 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,083 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | collected zombie processes
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,084 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=28951
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,156 | INFO     | retrieve            | pilot.util.processes             | kill_processes            | process IDs to be killed: [28951] (in reverse order)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,213 | WARNING  | retrieve            | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,214 | INFO     | retrieve            | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,214 | INFO     | retrieve            | pilot.control.job                | retrieve                  | ready for new job
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,214 | INFO     | retrieve            | root                             | retrieve                  | pilot has finished for previous job - re-establishing logging
Di 21. Jan 12:23:51 CET 2020: mpi4py not found
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,221 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,221 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ***  PanDA Pilot version 2.3.4 (12)  ***
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,221 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,222 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | 
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,222 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | pilot is running in a VM
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,222 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | architecture information:
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,339 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | 
Di 21. Jan 12:23:51 CET 2020: LSB Version:	:core-4.1-amd64:core-4.1-noarch
Di 21. Jan 12:23:51 CET 2020: Distributor ID:	CentOS
Di 21. Jan 12:23:51 CET 2020: Description:	CentOS Linux release 7.6.1810 (Core) 
Di 21. Jan 12:23:51 CET 2020: Release:	7.6.1810
Di 21. Jan 12:23:51 CET 2020: Codename:	Core
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,339 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,842 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc/slots/0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,869 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (12525240320 B)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,870 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,870 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,913 | WARNING  | monitor             | pilot.control.monitor            | control                   | aborting monitor loop since graceful_stop has been set
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,914 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:52,973 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,007 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,007 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,115 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,115 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,201 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,206 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,544 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,544 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,565 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 9 threads
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,565 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139789136664384)>, <ExcThread(queue_monitoring, started 139788914702080)>, <ExcThread(validate_pre, started 139788434798336)>, <ExcThread(failed_post, started 139788392834816)>, <ExcThread(copytool_in, started 139788409620224)>, <ExcThread(copytool_out, started 139788948272896)>, <ExcThread(execute_payloads, started 139787830818560)>, <ExcThread(job_monitor, started 139788401227520)>, <ExcThread(queue_monitor, started 139788384442112)>]
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,623 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,625 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:53,895 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:54,069 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:54,129 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:54,574 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 5 threads
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:54,575 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139789136664384)>, <ExcThread(queue_monitoring, started 139788914702080)>, <ExcThread(copytool_out, started 139788948272896)>, <ExcThread(job_monitor, started 139788401227520)>, <ExcThread(queue_monitor, started 139788384442112)>]
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:54,770 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:54,770 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:54,896 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:55,583 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 3 threads
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:55,583 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139789136664384)>, <ExcThread(queue_monitoring, started 139788914702080)>, <ExcThread(job_monitor, started 139788401227520)>]
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:55,729 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:58,732 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:59,603 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | thread count now at 2 threads
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:22:59,603 | DEBUG    | MainThread          | pilot.workflow.generic           | run                       | enumerate: [<_MainThread(MainThread, started 139789136664384)>, <ExcThread(job_monitor, started 139788401227520)>]
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:47,697 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:47,697 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:47,955 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:47,956 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:47,956 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:50 UTC [wrapper] ==== pilot stdout END ====
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] ==== wrapper stdout RESUME ====
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] Pilot exit status: 0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] STATUSCODE: 0
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] apfmon messages muted
Di 21. Jan 12:23:51 CET 2020: ---- find pandaID.out ----
Di 21. Jan 12:23:51 CET 2020: total 60
Di 21. Jan 12:23:51 CET 2020: -rw-------.  1 boinc boinc 11357 Jul 25 16:38 LICENSE
Di 21. Jan 12:23:51 CET 2020: -rw-------.  1 boinc boinc    20 Sep  9 13:04 MANIFEST.IN
Di 21. Jan 12:23:51 CET 2020: -rw-------.  1 boinc boinc     8 Dec 12 19:00 PILOTVERSION
Di 21. Jan 12:23:51 CET 2020: -rw-------.  1 boinc boinc  2212 Nov 14 11:01 README.md
Di 21. Jan 12:23:51 CET 2020: -rw-------.  1 boinc boinc   221 Jul 25 16:38 TODO.md
Di 21. Jan 12:23:51 CET 2020: -rw-------.  1 boinc boinc    11 Jan 21 11:41 pandaIDs.out
Di 21. Jan 12:23:51 CET 2020: drwx------. 14 boinc boinc   216 Jan 21 11:41 pilot
Di 21. Jan 12:23:51 CET 2020: -rwx------.  1 boinc boinc 21225 Dec 12 19:00 pilot.py
Di 21. Jan 12:23:51 CET 2020: -rw-------.  1 boinc boinc   766 Oct 10 16:01 setup.py
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc 11 Jan 21 11:41 /var/lib/boinc/slots/0/pilot2/pandaIDs.out
Di 21. Jan 12:23:51 CET 2020: 4002876565
Di 21. Jan 12:23:51 CET 2020: 
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] Test setup, not cleaning
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] ==== wrapper stdout END ====
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] ==== wrapper stderr END ====
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] wrapper wrapperexiting ec=0, duration=2549
Di 21. Jan 12:23:51 CET 2020: 2020-01-21 11:23:51 UTC [wrapper] apfmon messages muted
Di 21. Jan 12:23:51 CET 2020:  *** Error codes and diagnostics ***
Di 21. Jan 12:23:51 CET 2020:     "exeErrorCode": 0,
Di 21. Jan 12:23:51 CET 2020:     "exeErrorDiag": "",
Di 21. Jan 12:23:51 CET 2020:     "pilotErrorCode": 0,
Di 21. Jan 12:23:51 CET 2020:     "pilotErrorDiag": "",
Di 21. Jan 12:23:51 CET 2020:  *** Listing of results directory ***
Di 21. Jan 12:23:51 CET 2020: insgesamt 378940
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc    267260 20. Jan 16:32 pilot2.tar.gz
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      4492 20. Jan 17:15 queuedata.json
Di 21. Jan 12:23:51 CET 2020: -rwx------. 1 boinc boinc     12641 20. Jan 17:17 runpilot2-wrapper.sh
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc       107 21. Jan 11:41 wrapper_26015_x86_64-pc-linux-gnu
Di 21. Jan 12:23:51 CET 2020: -rwxr-xr-x. 1 boinc boinc      5557 21. Jan 11:41 run_atlas
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc       112 21. Jan 11:41 job.xml
Di 21. Jan 12:23:51 CET 2020: drwxrwx--x. 2 boinc boinc        86 21. Jan 11:41 shared
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      5903 21. Jan 11:41 init_data.xml
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc         0 21. Jan 11:41 boinc_lockfile
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 21. Jan 11:41 EVNT.14296418._001447.pool.root.1
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      8509 21. Jan 11:41 start_atlas.sh
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc       815 21. Jan 11:41 RTE.tar.gz
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc    275414 21. Jan 11:41 input.tar.gz
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      2948 21. Jan 11:41 pandaJob.out
Di 21. Jan 12:23:51 CET 2020: drwxr-xr-x. 3 boinc boinc        17 21. Jan 11:41 APPS
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc   3699292 21. Jan 11:41 agis_schedconf.cvmfs.json
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc   7792440 21. Jan 11:41 agis_ddmendpoints.json
Di 21. Jan 12:23:51 CET 2020: drwx------. 3 boinc boinc       229 21. Jan 11:41 pilot2
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc       535 21. Jan 12:12 boinc_task_state.xml
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc   9055725 21. Jan 12:22 HITS.000649-197481-27293._078090.pool.root.1
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc       833 21. Jan 12:22 memory_monitor_summary.json
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc    516433 21. Jan 12:22 log.000649-197481-27293._078090.job.log.tgz.1
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc     12336 21. Jan 12:22 heartbeat.json
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      8192 21. Jan 12:23 boinc_mmap_file
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc        26 21. Jan 12:23 wrapper_checkpoint.txt
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc      8519 21. Jan 12:23 pilotlog.txt
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc    236186 21. Jan 12:23 log.000649-197481-27293._078090.job.log.1
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc       487 21. Jan 12:23 3PmKDm6uoDwnShfckohDCDFpABFKDmABFKDmyiALDmFEFKDm6n0Pen.diag
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      7089 21. Jan 12:23 runtime_log.err
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc       496 21. Jan 12:23 output.list
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc       739 21. Jan 12:23 runtime_log
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc    778240 21. Jan 12:23 result.tar.gz
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      2303 21. Jan 12:23 stderr.txt
Di 21. Jan 12:23:51 CET 2020: HITS file was successfully produced:
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc 9055725 21. Jan 12:22 shared/HITS.pool.root.1
Di 21. Jan 12:23:51 CET 2020:  *** Contents of shared directory: ***
Di 21. Jan 12:23:51 CET 2020: insgesamt 366584
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc      8509 21. Jan 11:41 start_atlas.sh
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc       815 21. Jan 11:41 RTE.tar.gz
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc    275414 21. Jan 11:41 input.tar.gz
Di 21. Jan 12:23:51 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 21. Jan 11:41 ATLAS.root_0
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc   9055725 21. Jan 12:22 HITS.pool.root.1
Di 21. Jan 12:23:51 CET 2020: -rw-------. 1 boinc boinc    778240 21. Jan 12:23 result.tar.gz
12:23:52 (22357): run_atlas exited; CPU time 3820.610905
12:23:52 (22357): called boinc_finish(0)

</stderr_txt>
]]>


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