| Name | NHkKDmOvoDwnShfckohDCDFpABFKDmABFKDmyiALDmKEFKDmM73apm_2 |
| Workunit | 1973472 |
| Created | 23 Jan 2020, 11:22:38 UTC |
| Sent | 23 Jan 2020, 11:34:40 UTC |
| Report deadline | 30 Jan 2020, 11:34:40 UTC |
| Received | 23 Jan 2020, 12:26:15 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3717 |
| Run time | 45 min 37 sec |
| CPU time | 1 hours 37 min 35 sec |
| Validate state | Valid |
| Credit | 111.68 |
| Device peak FLOPS | 17.62 GFLOPS |
| Application version | ATLAS Simulation v1.00 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.85 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 720.23 MB |
Stderr output
<core_client_version>7.12.0</core_client_version>
<![CDATA[
<stderr_txt>
12:36:18 (26823): wrapper (7.7.26015): starting
12:36:18 (26823): wrapper: running run_atlas (--nthreads 4)
do 23 jan 2020 12:36:18 CET: Arguments: --nthreads 4
do 23 jan 2020 12:36:18 CET: Threads: 4
do 23 jan 2020 12:36:18 CET: Checking for CVMFS
do 23 jan 2020 12:36:20 CET: Probing /cvmfs/atlas.cern.ch... OK
do 23 jan 2020 12:36:22 CET: Probing /cvmfs/atlas-condb.cern.ch... OK
do 23 jan 2020 12:36:22 CET: Probing /cvmfs/grid.cern.ch... OK
do 23 jan 2020 12:36:23 CET: Probing /cvmfs/cernvm-prod.cern.ch... OK
do 23 jan 2020 12:36:24 CET: Probing /cvmfs/sft.cern.ch... OK
do 23 jan 2020 12:36:24 CET: Probing /cvmfs/alice.cern.ch... OK
do 23 jan 2020 12:36:25 CET: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
do 23 jan 2020 12:36:25 CET: 2.5.2.0 26960 0 24680 59506 3 1 2185872 4194305 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
do 23 jan 2020 12:36:25 CET: CVMFS is ok
do 23 jan 2020 12:36:25 CET: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
do 23 jan 2020 12:36:25 CET: Checking for singularity binary...
do 23 jan 2020 12:36:25 CET: Singularity is not installed, using version from CVMFS
do 23 jan 2020 12:36:25 CET: Checking singularity works with /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
do 23 jan 2020 12:37:02 CET: [34mINFO: [0m Convert SIF file to sandbox... LinAH125 [34mINFO: [0m Cleaning up image...
do 23 jan 2020 12:37:02 CET: Singularity works
do 23 jan 2020 12:37:07 CET: Set ATHENA_PROC_NUMBER=4
do 23 jan 2020 12:37:07 CET: Starting ATLAS job with PandaID=4002876565
do 23 jan 2020 12:37:07 CET: Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /var/lib/boinc-client/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
12:53:41 (10459): wrapper (7.7.26015): starting
12:53:41 (10459): wrapper: running run_atlas (--nthreads 4)
do 23 jan 2020 12:53:41 CET: Arguments: --nthreads 4
do 23 jan 2020 12:53:41 CET: Threads: 4
do 23 jan 2020 12:53:41 CET: This job has been restarted, cleaning up previous attempt
do 23 jan 2020 12:53:41 CET: Checking for CVMFS
do 23 jan 2020 12:53:41 CET: Probing /cvmfs/atlas.cern.ch... OK
do 23 jan 2020 12:53:41 CET: Probing /cvmfs/atlas-condb.cern.ch... OK
do 23 jan 2020 12:53:42 CET: Probing /cvmfs/grid.cern.ch... OK
do 23 jan 2020 12:53:43 CET: Probing /cvmfs/cernvm-prod.cern.ch... OK
do 23 jan 2020 12:53:43 CET: Probing /cvmfs/sft.cern.ch... OK
do 23 jan 2020 12:53:44 CET: Probing /cvmfs/alice.cern.ch... OK
do 23 jan 2020 12:53:45 CET: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
do 23 jan 2020 12:53:45 CET: 2.5.2.0 26960 17 35960 59506 2 78 2197661 4194305 0 65024 0 11948 100 2 3 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
do 23 jan 2020 12:53:45 CET: CVMFS is ok
do 23 jan 2020 12:53:45 CET: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
do 23 jan 2020 12:53:45 CET: Checking for singularity binary...
do 23 jan 2020 12:53:45 CET: Singularity is not installed, using version from CVMFS
do 23 jan 2020 12:53:45 CET: Checking singularity works with /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
do 23 jan 2020 12:54:17 CET: [34mINFO: [0m Convert SIF file to sandbox... LinAH125 [34mINFO: [0m Cleaning up image...
do 23 jan 2020 12:54:17 CET: Singularity works
do 23 jan 2020 12:54:21 CET: Set ATHENA_PROC_NUMBER=4
do 23 jan 2020 12:54:21 CET: Starting ATLAS job with PandaID=4002876565
do 23 jan 2020 12:54:21 CET: Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /var/lib/boinc-client/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
do 23 jan 2020 13:25:51 CET: *** The last 200 lines of the pilot log: ***
do 23 jan 2020 13:25:51 CET: "wallTime": 1
do 23 jan 2020 13:25:51 CET: },
do 23 jan 2020 13:25:51 CET: "preExe": {
do 23 jan 2020 13:25:51 CET: "cpuTime": 1,
do 23 jan 2020 13:25:51 CET: "wallTime": 4
do 23 jan 2020 13:25:51 CET: },
do 23 jan 2020 13:25:51 CET: "total": {
do 23 jan 2020 13:25:51 CET: "cpuTime": 59,
do 23 jan 2020 13:25:51 CET: "wallTime": 131
do 23 jan 2020 13:25:51 CET: },
do 23 jan 2020 13:25:51 CET: "validation": {
do 23 jan 2020 13:25:51 CET: "cpuTime": 0,
do 23 jan 2020 13:25:51 CET: "wallTime": 0
do 23 jan 2020 13:25:51 CET: },
do 23 jan 2020 13:25:51 CET: "wallTime": 126
do 23 jan 2020 13:25:51 CET: }
do 23 jan 2020 13:25:51 CET: },
do 23 jan 2020 13:25:51 CET: "machine": {
do 23 jan 2020 13:25:51 CET: "cpu_family": "6",
do 23 jan 2020 13:25:51 CET: "linux_distribution": [
do 23 jan 2020 13:25:51 CET: "CentOS Linux",
do 23 jan 2020 13:25:51 CET: "7.6.1810",
do 23 jan 2020 13:25:51 CET: "Core"
do 23 jan 2020 13:25:51 CET: ],
do 23 jan 2020 13:25:51 CET: "model": "42",
do 23 jan 2020 13:25:51 CET: "model_name": "Intel(R) Core(TM) i7-2600 CPU @ 3.40GHz",
do 23 jan 2020 13:25:51 CET: "node": "LinAH125",
do 23 jan 2020 13:25:51 CET: "platform": "Linux-4.18.0-25-generic-x86_64-with-centos-7.6.1810-Core"
do 23 jan 2020 13:25:51 CET: },
do 23 jan 2020 13:25:51 CET: "transform": {
do 23 jan 2020 13:25:51 CET: "cpuEfficiency": 0.629,
do 23 jan 2020 13:25:51 CET: "cpuPWEfficiency": 0.6588,
do 23 jan 2020 13:25:51 CET: "cpuTime": 6,
do 23 jan 2020 13:25:51 CET: "cpuTimeTotal": 4124,
do 23 jan 2020 13:25:51 CET: "externalCpuTime": 15,
do 23 jan 2020 13:25:51 CET: "processedEvents": 10,
do 23 jan 2020 13:25:51 CET: "trfPredata": null,
do 23 jan 2020 13:25:51 CET: "wallTime": 1612
do 23 jan 2020 13:25:51 CET: }
do 23 jan 2020 13:25:51 CET: }
do 23 jan 2020 13:25:51 CET: }
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,560 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,561 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,561 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,561 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,561 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,561 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,561 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,562 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -351750733 B to job metrics
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,562 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,562 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,563 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -647.97 B/s (using 21 data points, chi2=1819519)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,563 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=4 actualCoreCount=1 nEvents=10 leak=-647.97 chi2=1819519"
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,563 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,564 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,565 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 33425, 'nprocs': 12, 'nthreads': 1, 'rx_bytes': 26885946, 'wtime': 1667, 'rss': 9750556, 'write_bytes': 26603520, 'vmem': 14031036, 'read_bytes': 3147628544, 'stime': 60, 'tx_bytes': 11155823, 'pss': 2576058, 'wchar': 33494050, 'rchar': 1159518692, 'tx_packets': 22068, 'swap': 0, 'utime': 4057}, 'Avg': {'write_bytes': 15949, 'nprocs': 7, 'nthreads': 0, 'rx_bytes': 16119, 'rx_packets': 20, 'vmem': 9064183, 'read_bytes': 1887124, 'swap': 0, 'tx_bytes': 6688, 'pss': 1913215, 'wchar': 20080, 'rchar': 695175, 'tx_packets': 13, 'rss': 6089431}}
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,565 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,565 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,565 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,565 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 1 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 1 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 1766 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 2 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,566 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,567 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc-client/slots/0/heartbeat.json
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,567 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,567 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,881 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,881 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-197891-18133
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,882 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 4109 s
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 17378
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 17378
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 4
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,883 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,884 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,885 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:54,890 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:55,895 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [17378]
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:55,896 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 17378
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:55,896 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,901 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,901 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=17378
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,948 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [17378] (in reverse order)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,982 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,983 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,983 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,983 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
do 23 jan 2020 13:25:51 CET: mpi4py not found
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,988 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,988 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,988 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,988 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,988 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:56,988 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,095 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
do 23 jan 2020 13:25:51 CET: LSB Version: :core-4.1-amd64:core-4.1-noarch
do 23 jan 2020 13:25:51 CET: Distributor ID: CentOS
do 23 jan 2020 13:25:51 CET: Description: CentOS Linux release 7.6.1810 (Core)
do 23 jan 2020 13:25:51 CET: Release: 7.6.1810
do 23 jan 2020 13:25:51 CET: Codename: Core
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,095 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,601 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,617 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (9266266112 B)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,617 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,618 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,913 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 16 threads
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,913 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140133882070848)>, <ExcThread(job, started 140133714179840)>, <ExcThread(validate, started 140133705787136)>, <ExcThread(execute_payloads, started 140132569052928)>, <ExcThread(monitor, started 140133655430912)>, <ExcThread(validate_pre, started 140133156247296)>, <ExcThread(copytool_in, started 140133164640000)>, <ExcThread(queue_monitoring, started 140133672216320)>, <ExcThread(failed_post, started 140133122676480)>, <ExcThread(create_data_payload, started 140133680609024)>, <ExcThread(job_monitor, started 140133147854592)>, <ExcThread(copytool_out, started 140133689001728)>, <ExcThread(validate_post, started 140133139461888)>, <ExcThread(data, started 140133697394432)>, <ExcThread(queue_monitor, started 140133131069184)>, <ExcThread(payload, started 140133663823616)>]
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,959 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:57,960 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,266 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,365 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,365 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,366 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,366 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,365 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,588 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,588 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,589 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,589 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,865 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,914 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 7 threads
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:58,914 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140133882070848)>, <ExcThread(queue_monitoring, started 140133672216320)>, <ExcThread(failed_post, started 140133122676480)>, <ExcThread(job_monitor, started 140133147854592)>, <ExcThread(copytool_out, started 140133689001728)>, <ExcThread(validate_post, started 140133139461888)>, <ExcThread(queue_monitor, started 140133131069184)>]
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:59,068 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:59,123 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:59,596 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:59,596 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:59,869 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:59,925 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:24:59,925 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140133882070848)>, <ExcThread(queue_monitoring, started 140133672216320)>, <ExcThread(job_monitor, started 140133147854592)>]
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:00,198 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:03,202 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:03,967 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:03,967 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140133882070848)>, <ExcThread(job_monitor, started 140133147854592)>]
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49,238 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49,238 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49,641 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49,642 | INFO | MainThread | root | wrap_up | traces error code: 0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49,642 | INFO | MainThread | root | wrap_up | pilot has finished
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] ==== pilot stdout END ====
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] ==== wrapper stdout RESUME ====
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] Pilot exit status: 0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] STATUSCODE: 0
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] apfmon messages muted
do 23 jan 2020 13:25:51 CET: ---- find pandaID.out ----
do 23 jan 2020 13:25:51 CET: total 64
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 11357 Jul 25 16:38 LICENSE
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 2212 Nov 14 11:01 README.md
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 221 Jul 25 16:38 TODO.md
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 22 Jan 23 12:55 pandaIDs.out
do 23 jan 2020 13:25:51 CET: drwx------ 14 boinc boinc 4096 Jul 25 16:38 pilot
do 23 jan 2020 13:25:51 CET: -rwx------ 1 boinc boinc 21225 Dec 12 19:00 pilot.py
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 766 Oct 10 16:01 setup.py
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 22 Jan 23 12:55 /var/lib/boinc-client/slots/0/pilot2/pandaIDs.out
do 23 jan 2020 13:25:51 CET: 4002876565
do 23 jan 2020 13:25:51 CET: 4002876565
do 23 jan 2020 13:25:51 CET:
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] Test setup, not cleaning
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] ==== wrapper stdout END ====
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] ==== wrapper stderr END ====
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] wrapper wrapperexiting ec=0, duration=1853
do 23 jan 2020 13:25:51 CET: 2020-01-23 12:25:49 UTC [wrapper] apfmon messages muted
do 23 jan 2020 13:25:51 CET: *** Error codes and diagnostics ***
do 23 jan 2020 13:25:51 CET: "exeErrorCode": 0,
do 23 jan 2020 13:25:51 CET: "exeErrorDiag": "",
do 23 jan 2020 13:25:51 CET: "pilotErrorCode": 0,
do 23 jan 2020 13:25:51 CET: "pilotErrorDiag": "",
do 23 jan 2020 13:25:51 CET: *** Listing of results directory ***
do 23 jan 2020 13:25:51 CET: total 379404
do 23 jan 2020 13:25:51 CET: drwx------ 3 boinc boinc 4096 dec 12 19:00 pilot2
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 267260 jan 20 16:32 pilot2.tar.gz
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 4492 jan 20 17:15 queuedata.json
do 23 jan 2020 13:25:51 CET: -rwx------ 1 boinc boinc 12641 jan 20 17:17 runpilot2-wrapper.sh
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 107 jan 23 12:36 wrapper_26015_x86_64-pc-linux-gnu
do 23 jan 2020 13:25:51 CET: -rwxr-xr-x 1 boinc boinc 5557 jan 23 12:36 run_atlas
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 112 jan 23 12:36 job.xml
do 23 jan 2020 13:25:51 CET: drwxrwx--x 2 boinc boinc 4096 jan 23 12:36 shared
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 0 jan 23 12:36 boinc_lockfile
do 23 jan 2020 13:25:51 CET: drwxr-xr-x 3 boinc boinc 4096 jan 23 12:37 APPS
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 7854895 jan 23 12:37 agis_ddmendpoints.json
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 365251149 jan 23 12:54 EVNT.14296418._001447.pool.root.1
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 275412 jan 23 12:54 input.tar.gz
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 815 jan 23 12:54 RTE.tar.gz
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 8509 jan 23 12:54 start_atlas.sh
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 2948 jan 23 12:54 pandaJob.out
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 3707672 jan 23 12:55 agis_schedconf.cvmfs.json
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 535 jan 23 13:16 boinc_task_state.xml
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 5880 jan 23 13:19 init_data.xml
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 9091277 jan 23 13:23 HITS.000649-197891-18133._078090.pool.root.1
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 838 jan 23 13:24 memory_monitor_summary.json
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 726915 jan 23 13:24 log.000649-197891-18133._078090.job.log.tgz.1
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 11030 jan 23 13:24 heartbeat.json
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 8192 jan 23 13:25 boinc_mmap_file
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 26 jan 23 13:25 wrapper_checkpoint.txt
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 8794 jan 23 13:25 pilotlog.txt
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 202412 jan 23 13:25 log.000649-197891-18133._078090.job.log.1
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 554 jan 23 13:25 NHkKDmOvoDwnShfckohDCDFpABFKDmABFKDmyiALDmKEFKDmM73apm.diag
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 739 jan 23 13:25 runtime_log
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 952320 jan 23 13:25 result.tar.gz
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 496 jan 23 13:25 output.list
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 7393 jan 23 13:25 runtime_log.err
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 4820 jan 23 13:25 stderr.txt
do 23 jan 2020 13:25:51 CET: HITS file was successfully produced:
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 9091277 jan 23 13:23 shared/HITS.pool.root.1
do 23 jan 2020 13:25:51 CET: *** Contents of shared directory: ***
do 23 jan 2020 13:25:51 CET: total 366796
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 8509 jan 23 12:36 start_atlas.sh
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 815 jan 23 12:36 RTE.tar.gz
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 275412 jan 23 12:36 input.tar.gz
do 23 jan 2020 13:25:51 CET: -rw-r--r-- 1 boinc boinc 365251149 jan 23 12:36 ATLAS.root_0
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 9091277 jan 23 13:23 HITS.pool.root.1
do 23 jan 2020 13:25:51 CET: -rw------- 1 boinc boinc 952320 jan 23 13:25 result.tar.gz
13:25:51 (10459): run_atlas exited; CPU time 4067.240670
13:25:51 (10459): called boinc_finish(0)
</stderr_txt>
]]>
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