| Name | dd4NDmavoDwnShfckohDCDFpABFKDmABFKDmyiALDmOEFKDmVrbNmm_2 |
| Workunit | 1973480 |
| Created | 23 Jan 2020, 11:22:38 UTC |
| Sent | 24 Jan 2020, 14:11:58 UTC |
| Report deadline | 31 Jan 2020, 14:11:58 UTC |
| Received | 24 Jan 2020, 15:05:08 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3848 |
| Run time | 47 min 23 sec |
| CPU time | 51 min 11 sec |
| Validate state | Valid |
| Credit | 44.31 |
| Device peak FLOPS | 6.73 GFLOPS |
| Application version | ATLAS Simulation v1.00 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.81 GB |
| Peak swap size | 5.66 GB |
| Peak disk usage | 719.61 MB |
Stderr output
<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
15:15:33 (2882): wrapper (7.7.26015): starting
15:15:33 (2882): wrapper: running run_atlas (--nthreads 2)
Fr 24. Jan 15:15:33 CET 2020: Arguments: --nthreads 2
Fr 24. Jan 15:15:33 CET 2020: Threads: 2
Fr 24. Jan 15:15:33 CET 2020: Checking for CVMFS
Fr 24. Jan 15:15:39 CET 2020: Probing /cvmfs/atlas.cern.ch... OK
Fr 24. Jan 15:15:41 CET 2020: Probing /cvmfs/atlas-condb.cern.ch... OK
Fr 24. Jan 15:15:43 CET 2020: Probing /cvmfs/grid.cern.ch... OK
Fr 24. Jan 15:15:45 CET 2020: Probing /cvmfs/cernvm-prod.cern.ch... OK
Fr 24. Jan 15:15:46 CET 2020: Probing /cvmfs/sft.cern.ch... OK
Fr 24. Jan 15:15:48 CET 2020: Probing /cvmfs/alice.cern.ch... OK
Fr 24. Jan 15:15:48 CET 2020: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
Fr 24. Jan 15:15:48 CET 2020: 2.7.0.0 3103 0 28520 59535 3 1 67491 4194305 0 65024 0 0 n/a 20813 5547 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
Fr 24. Jan 15:15:48 CET 2020: CVMFS is ok
Fr 24. Jan 15:15:48 CET 2020: Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
Fr 24. Jan 15:15:48 CET 2020: Checking for singularity binary...
Fr 24. Jan 15:15:48 CET 2020: Using singularity found in PATH at /usr/bin/singularity
Fr 24. Jan 15:15:48 CET 2020: Running /usr/bin/singularity --version
Fr 24. Jan 15:15:48 CET 2020: singularity version 3.5.2-1.1.el7
Fr 24. Jan 15:15:48 CET 2020: Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
Fr 24. Jan 15:15:58 CET 2020: ryzcos7
Fr 24. Jan 15:15:58 CET 2020: Singularity works
Fr 24. Jan 15:15:58 CET 2020: Set ATHENA_PROC_NUMBER=2
Fr 24. Jan 15:15:58 CET 2020: Starting ATLAS job with PandaID=4002876565
Fr 24. Jan 15:15:58 CET 2020: Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/7 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
Fr 24. Jan 16:02:54 CET 2020: *** The last 200 lines of the pilot log: ***
Fr 24. Jan 16:02:54 CET 2020: "cpuTime": 1,
Fr 24. Jan 16:02:54 CET 2020: "wallTime": 1
Fr 24. Jan 16:02:54 CET 2020: },
Fr 24. Jan 16:02:54 CET 2020: "preExe": {
Fr 24. Jan 16:02:54 CET 2020: "cpuTime": 3,
Fr 24. Jan 16:02:54 CET 2020: "wallTime": 13
Fr 24. Jan 16:02:54 CET 2020: },
Fr 24. Jan 16:02:54 CET 2020: "total": {
Fr 24. Jan 16:02:54 CET 2020: "cpuTime": 124,
Fr 24. Jan 16:02:54 CET 2020: "wallTime": 291
Fr 24. Jan 16:02:54 CET 2020: },
Fr 24. Jan 16:02:54 CET 2020: "validation": {
Fr 24. Jan 16:02:54 CET 2020: "cpuTime": 0,
Fr 24. Jan 16:02:54 CET 2020: "wallTime": 0
Fr 24. Jan 16:02:54 CET 2020: },
Fr 24. Jan 16:02:54 CET 2020: "wallTime": 277
Fr 24. Jan 16:02:54 CET 2020: }
Fr 24. Jan 16:02:54 CET 2020: },
Fr 24. Jan 16:02:54 CET 2020: "machine": {
Fr 24. Jan 16:02:54 CET 2020: "cpu_family": "23",
Fr 24. Jan 16:02:54 CET 2020: "linux_distribution": [
Fr 24. Jan 16:02:54 CET 2020: "CentOS Linux",
Fr 24. Jan 16:02:54 CET 2020: "7.6.1810",
Fr 24. Jan 16:02:54 CET 2020: "Core"
Fr 24. Jan 16:02:54 CET 2020: ],
Fr 24. Jan 16:02:54 CET 2020: "model": "8",
Fr 24. Jan 16:02:54 CET 2020: "model_name": "AMD Ryzen 7 2700 Eight-Core Processor",
Fr 24. Jan 16:02:54 CET 2020: "node": "ryzcos7",
Fr 24. Jan 16:02:54 CET 2020: "platform": "Linux-3.10.0-693.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
Fr 24. Jan 16:02:54 CET 2020: },
Fr 24. Jan 16:02:54 CET 2020: "transform": {
Fr 24. Jan 16:02:54 CET 2020: "cpuEfficiency": 0.6036,
Fr 24. Jan 16:02:54 CET 2020: "cpuPWEfficiency": 0.629,
Fr 24. Jan 16:02:54 CET 2020: "cpuTime": 10,
Fr 24. Jan 16:02:54 CET 2020: "cpuTimeTotal": 3195,
Fr 24. Jan 16:02:54 CET 2020: "externalCpuTime": 23,
Fr 24. Jan 16:02:54 CET 2020: "processedEvents": 10,
Fr 24. Jan 16:02:55 CET 2020: "trfPredata": null,
Fr 24. Jan 16:02:55 CET 2020: "wallTime": 2534
Fr 24. Jan 16:02:55 CET 2020: }
Fr 24. Jan 16:02:55 CET 2020: }
Fr 24. Jan 16:02:55 CET 2020: }
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,591 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,591 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,591 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,591 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,591 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,592 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,596 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,596 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -353098317 B to job metrics
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,597 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,597 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,598 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 213.80 B/s (using 36 data points, chi2=9342393)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,598 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=2 actualCoreCount=4 nEvents=10 leak=213.80 chi2=9342393"
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,599 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,600 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc/slots/7/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,603 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 356063, 'nprocs': 10, 'nthreads': 1, 'rx_bytes': 497515755, 'wtime': 2609, 'rss': 5727028, 'write_bytes': 24776704, 'vmem': 8724632, 'read_bytes': 3204649984, 'stime': 115, 'tx_bytes': 46738241, 'pss': 2336259, 'wchar': 31023678, 'rchar': 1101362916, 'tx_packets': 79211, 'swap': 0, 'utime': 3005}, 'Avg': {'write_bytes': 9495, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 190659, 'rx_packets': 136, 'vmem': 5736198, 'read_bytes': 1228098, 'swap': 0, 'tx_bytes': 17911, 'pss': 1616812, 'wchar': 11889, 'rchar': 422068, 'tx_packets': 30, 'rss': 3483334}}
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,603 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,603 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,603 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,603 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 1 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 1 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 2683 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 4 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,604 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,605 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc/slots/7/heartbeat.json
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,605 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,605 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,605 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-198091-7481
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,606 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
16:02:55 (2882): run_atlas exited; CPU time 3071.935274
16:02:55 (2882): called boinc_finish(0)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 3131 s
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 10169
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 10169
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 2
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,607 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,611 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,612 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,613 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:01:59,618 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/7/PanDA_Pilot-4002876565
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:00,635 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [10169]
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:00,636 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 10169
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:00,636 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:01,675 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:01,675 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=10169
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:01,840 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [10169] (in reverse order)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,001 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,001 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,001 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,001 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
Fr 24. Jan 16:02:55 CET 2020: mpi4py not found
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,019 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,020 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,020 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,020 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,020 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,020 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,385 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
Fr 24. Jan 16:02:55 CET 2020: LSB Version: :core-4.1-amd64:core-4.1-noarch
Fr 24. Jan 16:02:55 CET 2020: Distributor ID: CentOS
Fr 24. Jan 16:02:55 CET 2020: Description: CentOS Linux release 7.6.1810 (Core)
Fr 24. Jan 16:02:55 CET 2020: Release: 7.6.1810
Fr 24. Jan 16:02:55 CET 2020: Codename: Core
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,385 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,890 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/7
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,935 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (8431599616 B)
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,935 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:02,935 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,101 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,107 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 15 threads
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,107 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579930060608)>, <ExcThread(job, started 140579767379712)>, <ExcThread(queue_monitoring, started 140579363084032)>, <ExcThread(failed_post, started 140578901714688)>, <ExcThread(payload, started 140579354691328)>, <ExcThread(validate_pre, started 140579346298624)>, <ExcThread(validate, started 140579758987008)>, <ExcThread(copytool_out, started 140579371476736)>, <ExcThread(job_monitor, started 140579733808896)>, <ExcThread(monitor, started 140579329513216)>, <ExcThread(data, started 140579379869440)>, <ExcThread(execute_payloads, started 140578893321984)>, <ExcThread(copytool_in, started 140579337905920)>, <ExcThread(queue_monitor, started 140579725416192)>, <ExcThread(create_data_payload, started 140579750594304)>]
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,108 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,133 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,208 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,501 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,501 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,596 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,596 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,672 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,678 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,679 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,679 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,993 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:03,994 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:04,052 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:04,109 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 5 threads
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:04,109 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579930060608)>, <ExcThread(queue_monitoring, started 140579363084032)>, <ExcThread(copytool_out, started 140579371476736)>, <ExcThread(job_monitor, started 140579733808896)>, <ExcThread(queue_monitor, started 140579725416192)>]
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:04,717 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:04,718 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:05,055 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:05,126 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:05,127 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579930060608)>, <ExcThread(queue_monitoring, started 140579363084032)>, <ExcThread(job_monitor, started 140579733808896)>]
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:05,642 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:08,664 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
Fr 24. Jan 16:02:55 CET 2020: 2020-01-24 15:02:09,165 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:09,166 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140579930060608)>, <ExcThread(job_monitor, started 140579733808896)>]
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54,089 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54,090 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54,145 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54,145 | INFO | MainThread | root | wrap_up | traces error code: 0
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54,146 | INFO | MainThread | root | wrap_up | pilot has finished
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] ==== pilot stdout END ====
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] ==== wrapper stdout RESUME ====
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] Pilot exit status: 0
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] STATUSCODE: 0
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] apfmon messages muted
Fr 24. Jan 16:02:56 CET 2020: ---- find pandaID.out ----
Fr 24. Jan 16:02:56 CET 2020: total 60
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 11357 Jul 25 2019 LICENSE
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 2212 Nov 14 11:01 README.md
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 221 Jul 25 2019 TODO.md
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 11 Jan 24 15:16 pandaIDs.out
Fr 24. Jan 16:02:56 CET 2020: drwx------. 14 boinc boinc 216 Jan 24 15:16 pilot
Fr 24. Jan 16:02:56 CET 2020: -rwx------. 1 boinc boinc 21225 Dec 12 19:00 pilot.py
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 766 Oct 10 16:01 setup.py
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 11 Jan 24 15:16 /var/lib/boinc/slots/7/pilot2/pandaIDs.out
Fr 24. Jan 16:02:56 CET 2020: 4002876565
Fr 24. Jan 16:02:56 CET 2020:
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] Test setup, not cleaning
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] ==== wrapper stdout END ====
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] ==== wrapper stderr END ====
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] wrapper wrapperexiting ec=0, duration=2807
Fr 24. Jan 16:02:56 CET 2020: 2020-01-24 15:02:54 UTC [wrapper] apfmon messages muted
Fr 24. Jan 16:02:56 CET 2020: *** Error codes and diagnostics ***
Fr 24. Jan 16:02:56 CET 2020: "exeErrorCode": 0,
Fr 24. Jan 16:02:56 CET 2020: "exeErrorDiag": "",
Fr 24. Jan 16:02:56 CET 2020: "pilotErrorCode": 0,
Fr 24. Jan 16:02:56 CET 2020: "pilotErrorDiag": "",
Fr 24. Jan 16:02:56 CET 2020: *** Listing of results directory ***
Fr 24. Jan 16:02:56 CET 2020: insgesamt 379092
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 267260 20. Jan 16:32 pilot2.tar.gz
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 4492 20. Jan 17:15 queuedata.json
Fr 24. Jan 16:02:56 CET 2020: -rwx------. 1 boinc boinc 12641 20. Jan 17:17 runpilot2-wrapper.sh
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 107 24. Jan 15:15 wrapper_26015_x86_64-pc-linux-gnu
Fr 24. Jan 16:02:56 CET 2020: -rwxr-xr-x. 1 boinc boinc 5557 24. Jan 15:15 run_atlas
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 112 24. Jan 15:15 job.xml
Fr 24. Jan 16:02:56 CET 2020: drwxrwx--x. 2 boinc boinc 86 24. Jan 15:15 shared
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 5992 24. Jan 15:15 init_data.xml
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 0 24. Jan 15:15 boinc_lockfile
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 275419 24. Jan 15:15 input.tar.gz
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 24. Jan 15:15 EVNT.14296418._001447.pool.root.1
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 8505 24. Jan 15:15 start_atlas.sh
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 815 24. Jan 15:15 RTE.tar.gz
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 2938 24. Jan 15:15 pandaJob.out
Fr 24. Jan 16:02:56 CET 2020: drwxr-xr-x. 3 boinc boinc 17 24. Jan 15:16 APPS
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 3662623 24. Jan 15:16 agis_schedconf.cvmfs.json
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 7844343 24. Jan 15:16 agis_ddmendpoints.json
Fr 24. Jan 16:02:56 CET 2020: drwx------. 3 boinc boinc 229 24. Jan 15:16 pilot2
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 535 24. Jan 15:51 boinc_task_state.xml
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 9176584 24. Jan 16:01 HITS.000649-198091-7481._078090.pool.root.1
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 842 24. Jan 16:01 memory_monitor_summary.json
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 518711 24. Jan 16:01 log.000649-198091-7481._078090.job.log.tgz.1
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 11690 24. Jan 16:01 heartbeat.json
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 8192 24. Jan 16:02 boinc_mmap_file
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 26 24. Jan 16:02 wrapper_checkpoint.txt
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 8630 24. Jan 16:02 pilotlog.txt
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 245061 24. Jan 16:02 log.000649-198091-7481._078090.job.log.1
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 490 24. Jan 16:02 dd4NDmavoDwnShfckohDCDFpABFKDmABFKDmyiALDmOEFKDmVrbNmm.diag
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 493 24. Jan 16:02 output.list
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 7053 24. Jan 16:02 runtime_log.err
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 736 24. Jan 16:02 runtime_log
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 788480 24. Jan 16:02 result.tar.gz
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 2194 24. Jan 16:02 stderr.txt
Fr 24. Jan 16:02:56 CET 2020: HITS file was successfully produced:
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 9176584 24. Jan 16:01 shared/HITS.pool.root.1
Fr 24. Jan 16:02:56 CET 2020: *** Contents of shared directory: ***
Fr 24. Jan 16:02:56 CET 2020: insgesamt 366716
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 365251149 24. Jan 15:15 ATLAS.root_0
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 8505 24. Jan 15:15 start_atlas.sh
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 815 24. Jan 15:15 RTE.tar.gz
Fr 24. Jan 16:02:56 CET 2020: -rw-r--r--. 1 boinc boinc 275419 24. Jan 15:15 input.tar.gz
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 9176584 24. Jan 16:01 HITS.pool.root.1
Fr 24. Jan 16:02:56 CET 2020: -rw-------. 1 boinc boinc 788480 24. Jan 16:02 result.tar.gz
</stderr_txt>
]]>
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