| Name | j3fNDmLatJwnShfckohDCDFpABFKDmABFKDmyiALDmbEFKDmRNjuwm_1 |
| Workunit | 1980548 |
| Created | 6 Feb 2020, 13:20:01 UTC |
| Sent | 6 Feb 2020, 16:47:36 UTC |
| Report deadline | 13 Feb 2020, 16:47:36 UTC |
| Received | 6 Feb 2020, 17:58:50 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3717 |
| Run time | 1 hours 9 min 28 sec |
| CPU time | 1 hours 42 min 15 sec |
| Validate state | Valid |
| Credit | 85.03 |
| Device peak FLOPS | 8.81 GFLOPS |
| Application version | ATLAS Simulation v1.02 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.86 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 721.95 MB |
Stderr output
<core_client_version>7.12.0</core_client_version>
<![CDATA[
<stderr_txt>
17:49:00 (28203): wrapper (7.7.26015): starting
17:49:00 (28203): wrapper: running run_atlas (--nthreads 2)
[2020-02-06 17:49:03] Arguments: --nthreads 2
[2020-02-06 17:49:03] Threads: 2
[2020-02-06 17:49:03] Checking for CVMFS
[2020-02-06 17:49:05] Probing /cvmfs/atlas.cern.ch... OK
[2020-02-06 17:49:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2020-02-06 17:49:08] Probing /cvmfs/grid.cern.ch... OK
[2020-02-06 17:49:10] Probing /cvmfs/cernvm-prod.cern.ch... OK
[2020-02-06 17:49:12] Probing /cvmfs/sft.cern.ch... OK
[2020-02-06 17:49:17] Probing /cvmfs/alice.cern.ch... OK
[2020-02-06 17:49:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2020-02-06 17:49:18] 2.5.2.0 28335 0 24604 60097 3 1 3784336 4194304 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2020-02-06 17:49:18] CVMFS is ok
[2020-02-06 17:49:18] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
[2020-02-06 17:49:18] Checking for singularity binary...
[2020-02-06 17:49:18] Singularity is not installed, using version from CVMFS
[2020-02-06 17:49:18] Checking singularity works with /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
[2020-02-06 17:50:03] [34mINFO: [0m Convert SIF file to sandbox... LinAH125 [34mINFO: [0m Cleaning up image...
[2020-02-06 17:50:03] Singularity works
[2020-02-06 17:50:06] Set ATHENA_PROC_NUMBER=2
[2020-02-06 17:50:06] Starting ATLAS job with PandaID=4002876565
[2020-02-06 17:50:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /var/lib/boinc-client/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
[2020-02-06 18:58:25] *** The last 200 lines of the pilot log: ***
[2020-02-06 18:58:25] "cpuTime": 1,
[2020-02-06 18:58:25] "wallTime": 1
[2020-02-06 18:58:25] },
[2020-02-06 18:58:25] "preExe": {
[2020-02-06 18:58:25] "cpuTime": 1,
[2020-02-06 18:58:25] "wallTime": 5
[2020-02-06 18:58:25] },
[2020-02-06 18:58:25] "total": {
[2020-02-06 18:58:25] "cpuTime": 123,
[2020-02-06 18:58:25] "wallTime": 216
[2020-02-06 18:58:25] },
[2020-02-06 18:58:25] "validation": {
[2020-02-06 18:58:25] "cpuTime": 0,
[2020-02-06 18:58:25] "wallTime": 0
[2020-02-06 18:58:25] },
[2020-02-06 18:58:25] "wallTime": 210
[2020-02-06 18:58:25] }
[2020-02-06 18:58:25] },
[2020-02-06 18:58:25] "machine": {
[2020-02-06 18:58:25] "cpu_family": "6",
[2020-02-06 18:58:25] "linux_distribution": [
[2020-02-06 18:58:25] "CentOS Linux",
[2020-02-06 18:58:25] "7.6.1810",
[2020-02-06 18:58:25] "Core"
[2020-02-06 18:58:25] ],
[2020-02-06 18:58:25] "model": "42",
[2020-02-06 18:58:25] "model_name": "Intel(R) Core(TM) i7-2600 CPU @ 3.40GHz",
[2020-02-06 18:58:25] "node": "LinAH125",
[2020-02-06 18:58:25] "platform": "Linux-4.18.0-25-generic-x86_64-with-centos-7.6.1810-Core"
[2020-02-06 18:58:25] },
[2020-02-06 18:58:25] "transform": {
[2020-02-06 18:58:25] "cpuEfficiency": 0.7909,
[2020-02-06 18:58:25] "cpuPWEfficiency": 0.8081,
[2020-02-06 18:58:25] "cpuTime": 11,
[2020-02-06 18:58:25] "cpuTimeTotal": 6191,
[2020-02-06 18:58:25] "externalCpuTime": 39,
[2020-02-06 18:58:25] "processedEvents": 10,
[2020-02-06 18:58:25] "trfPredata": null,
[2020-02-06 18:58:25] "wallTime": 3819
[2020-02-06 18:58:25] }
[2020-02-06 18:58:25] }
[2020-02-06 18:58:25] }
[2020-02-06 18:58:25] 2020-02-06 17:58:15,221 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
[2020-02-06 18:58:25] 2020-02-06 17:58:15,221 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
[2020-02-06 18:58:25] 2020-02-06 17:58:15,221 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
[2020-02-06 18:58:25] 2020-02-06 17:58:15,221 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
[2020-02-06 18:58:25] 2020-02-06 17:58:15,222 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,222 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
[2020-02-06 18:58:25] 2020-02-06 17:58:15,222 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
[2020-02-06 18:58:25] 2020-02-06 17:58:15,223 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -355600973 B to job metrics
[2020-02-06 18:58:25] 2020-02-06 17:58:15,225 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
[2020-02-06 18:58:25] 2020-02-06 17:58:15,225 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
[2020-02-06 18:58:25] 2020-02-06 17:58:15,226 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -119.56 B/s (using 58 data points, chi2=4898484)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,227 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=2 actualCoreCount=4 nEvents=10 leak=-119.56 chi2=4898484"
[2020-02-06 18:58:25] 2020-02-06 17:58:15,227 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,229 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,231 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 49015, 'nprocs': 10, 'nthreads': 1, 'rx_bytes': 26618028, 'wtime': 3871, 'rss': 5896176, 'write_bytes': 0, 'vmem': 8674456, 'read_bytes': 0, 'stime': 82, 'tx_bytes': 13928615, 'pss': 2307748, 'wchar': 0, 'rchar': 0, 'tx_packets': 39732, 'swap': 0, 'utime': 6071}, 'Avg': {'write_bytes': 0, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 6874, 'rx_packets': 12, 'vmem': 6858781, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 3597, 'pss': 1958654, 'wchar': 0, 'rchar': 0, 'tx_packets': 10, 'rss': 4533120}}
[2020-02-06 18:58:25] 2020-02-06 17:58:15,231 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
[2020-02-06 18:58:25] 2020-02-06 17:58:15,231 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
[2020-02-06 18:58:25] 2020-02-06 17:58:15,232 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
[2020-02-06 18:58:25] 2020-02-06 17:58:15,232 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
[2020-02-06 18:58:25] 2020-02-06 17:58:15,233 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 1 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,233 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 2 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,233 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,233 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 2 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,233 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 1 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,234 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 3958 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,234 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 5 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,234 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
[2020-02-06 18:58:25] 2020-02-06 17:58:15,235 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc-client/slots/0/heartbeat.json
[2020-02-06 18:58:25] 2020-02-06 17:58:15,236 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
[2020-02-06 18:58:25] 2020-02-06 17:58:15,236 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
[2020-02-06 18:58:25] 2020-02-06 17:58:15,236 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
[2020-02-06 18:58:25] 2020-02-06 17:58:15,236 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
[2020-02-06 18:58:25] 2020-02-06 17:58:15,237 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
[2020-02-06 18:58:25] 2020-02-06 17:58:15,237 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
[2020-02-06 18:58:25] 2020-02-06 17:58:15,237 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-1605032-12848
[2020-02-06 18:58:25] 2020-02-06 17:58:15,237 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,237 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
[2020-02-06 18:58:25] 2020-02-06 17:58:15,238 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
[2020-02-06 18:58:25] 2020-02-06 17:58:15,238 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
[2020-02-06 18:58:25] 2020-02-06 17:58:15,238 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
[2020-02-06 18:58:25] 2020-02-06 17:58:15,238 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
[2020-02-06 18:58:25] 2020-02-06 17:58:15,238 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
[2020-02-06 18:58:25] 2020-02-06 17:58:15,239 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
[2020-02-06 18:58:25] 2020-02-06 17:58:15,239 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 6175 s
[2020-02-06 18:58:25] 2020-02-06 17:58:15,239 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
[2020-02-06 18:58:25] 2020-02-06 17:58:15,239 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
[2020-02-06 18:58:25] 2020-02-06 17:58:15,239 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 3278
[2020-02-06 18:58:25] 2020-02-06 17:58:15,240 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 3278
[2020-02-06 18:58:25] 2020-02-06 17:58:15,240 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 2
[2020-02-06 18:58:25] 2020-02-06 17:58:15,240 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
[2020-02-06 18:58:25] 2020-02-06 17:58:15,240 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
[2020-02-06 18:58:25] 2020-02-06 17:58:15,240 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
[2020-02-06 18:58:25] 2020-02-06 17:58:15,241 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,241 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,241 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,241 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,241 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,242 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,242 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,242 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,242 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,242 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,243 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,243 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,243 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,243 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,244 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,244 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,244 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,244 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,245 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
[2020-02-06 18:58:25] 2020-02-06 17:58:15,245 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
[2020-02-06 18:58:25] 2020-02-06 17:58:15,253 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565
[2020-02-06 18:58:25] 2020-02-06 17:58:16,258 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [3278]
[2020-02-06 18:58:25] 2020-02-06 17:58:16,258 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 3278
[2020-02-06 18:58:25] 2020-02-06 17:58:16,258 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
[2020-02-06 18:58:25] 2020-02-06 17:58:17,263 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
[2020-02-06 18:58:25] 2020-02-06 17:58:17,263 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=3278
[2020-02-06 18:58:25] 2020-02-06 17:58:17,376 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [3278] (in reverse order)
[2020-02-06 18:58:25] 2020-02-06 17:58:17,439 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
[2020-02-06 18:58:25] 2020-02-06 17:58:17,439 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
[2020-02-06 18:58:25] 2020-02-06 17:58:17,440 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
[2020-02-06 18:58:25] 2020-02-06 17:58:17,440 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
[2020-02-06 18:58:25] mpi4py not found
[2020-02-06 18:58:25] 2020-02-06 17:58:17,446 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-06 18:58:25] 2020-02-06 17:58:17,447 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
[2020-02-06 18:58:25] 2020-02-06 17:58:17,447 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-06 18:58:25] 2020-02-06 17:58:17,447 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
[2020-02-06 18:58:25] 2020-02-06 17:58:17,447 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
[2020-02-06 18:58:25] 2020-02-06 17:58:17,448 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
[2020-02-06 18:58:25] 2020-02-06 17:58:17,606 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
[2020-02-06 18:58:25] LSB Version: :core-4.1-amd64:core-4.1-noarch
[2020-02-06 18:58:25] Distributor ID: CentOS
[2020-02-06 18:58:25] Description: CentOS Linux release 7.6.1810 (Core)
[2020-02-06 18:58:25] Release: 7.6.1810
[2020-02-06 18:58:25] Codename: Core
[2020-02-06 18:58:25] 2020-02-06 17:58:17,607 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-06 18:58:25] 2020-02-06 17:58:18,109 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/0
[2020-02-06 18:58:25] 2020-02-06 17:58:18,137 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (8967421952 B)
[2020-02-06 18:58:25] 2020-02-06 17:58:18,138 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
[2020-02-06 18:58:25] 2020-02-06 17:58:18,138 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:18,213 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
[2020-02-06 18:58:25] 2020-02-06 17:58:18,221 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:18,222 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
[2020-02-06 18:58:25] 2020-02-06 17:58:18,457 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
[2020-02-06 18:58:25] 2020-02-06 17:58:18,458 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:18,551 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 13 threads
[2020-02-06 18:58:25] 2020-02-06 17:58:18,552 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140376567985984)>, <ExcThread(copytool_in, started 140376140658432)>, <ExcThread(payload, started 140376149051136)>, <ExcThread(data, started 140376388519680)>, <ExcThread(validate, started 140376396912384)>, <ExcThread(validate_post, started 140375620572928)>, <ExcThread(queue_monitoring, started 140376165836544)>, <ExcThread(queue_monitor, started 140375603787520)>, <ExcThread(job_monitor, started 140375637358336)>, <ExcThread(validate_pre, started 140375628965632)>, <ExcThread(create_data_payload, started 140376157443840)>, <ExcThread(copytool_out, started 140376174229248)>, <ExcThread(failed_post, started 140375612180224)>]
[2020-02-06 18:58:25] 2020-02-06 17:58:18,669 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
[2020-02-06 18:58:25] 2020-02-06 17:58:18,870 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
[2020-02-06 18:58:25] 2020-02-06 17:58:18,870 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:18,972 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
[2020-02-06 18:58:25] 2020-02-06 17:58:18,972 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:19,140 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:19,144 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:19,145 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:19,146 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:19,214 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:19,567 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 6 threads
[2020-02-06 18:58:25] 2020-02-06 17:58:19,567 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140376567985984)>, <ExcThread(validate_post, started 140375620572928)>, <ExcThread(queue_monitoring, started 140376165836544)>, <ExcThread(queue_monitor, started 140375603787520)>, <ExcThread(job_monitor, started 140375637358336)>, <ExcThread(failed_post, started 140375612180224)>]
[2020-02-06 18:58:25] 2020-02-06 17:58:19,716 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:19,716 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:20,317 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
[2020-02-06 18:58:25] 2020-02-06 17:58:20,318 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:20,579 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
[2020-02-06 18:58:25] 2020-02-06 17:58:20,579 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140376567985984)>, <ExcThread(queue_monitoring, started 140376165836544)>, <ExcThread(job_monitor, started 140375637358336)>]
[2020-02-06 18:58:25] 2020-02-06 17:58:21,138 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 74 s)
[2020-02-06 18:58:25] 2020-02-06 17:58:21,138 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:21,581 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
[2020-02-06 18:58:25] 2020-02-06 17:58:21,581 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140376567985984)>, <ExcThread(queue_monitoring, started 140376165836544)>]
[2020-02-06 18:58:25] 2020-02-06 17:58:21,748 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:22,587 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
[2020-02-06 18:58:25] 2020-02-06 17:58:22,588 | INFO | MainThread | root | wrap_up | traces error code: 0
[2020-02-06 18:58:25] 2020-02-06 17:58:22,588 | INFO | MainThread | root | wrap_up | pilot has finished
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] ==== pilot stdout END ====
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] ==== wrapper stdout RESUME ====
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] Pilot exit status: 0
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] STATUSCODE: 0
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] apfmon messages muted
[2020-02-06 18:58:25] ---- find pandaID.out ----
[2020-02-06 18:58:25] total 64
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 11357 Jul 25 2019 LICENSE
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 2212 Nov 14 11:01 README.md
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 221 Jul 25 2019 TODO.md
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 11 Feb 6 17:51 pandaIDs.out
[2020-02-06 18:58:25] drwx------ 14 boinc boinc 4096 Feb 6 17:51 pilot
[2020-02-06 18:58:25] -rwx------ 1 boinc boinc 21225 Dec 12 19:00 pilot.py
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 766 Oct 10 16:01 setup.py
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 11 Feb 6 17:51 /var/lib/boinc-client/slots/0/pilot2/pandaIDs.out
[2020-02-06 18:58:25] 4002876565
[2020-02-06 18:58:25]
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] Test setup, not cleaning
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] ==== wrapper stdout END ====
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] ==== wrapper stderr END ====
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] wrapper wrapperexiting ec=0, duration=4015
[2020-02-06 18:58:25] 2020-02-06 17:58:22 UTC [wrapper] apfmon messages muted
[2020-02-06 18:58:25] *** Error codes and diagnostics ***
[2020-02-06 18:58:25] "exeErrorCode": 0,
[2020-02-06 18:58:25] "exeErrorDiag": "",
[2020-02-06 18:58:25] "pilotErrorCode": 0,
[2020-02-06 18:58:25] "pilotErrorDiag": "",
[2020-02-06 18:58:25] *** Listing of results directory ***
[2020-02-06 18:58:25] total 379204
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 267260 feb 6 11:21 pilot2.tar.gz
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 4492 feb 6 11:28 queuedata.json
[2020-02-06 18:58:25] -rwx------ 1 boinc boinc 12641 feb 6 11:29 runpilot2-wrapper.sh
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 107 feb 6 17:48 wrapper_26015_x86_64-pc-linux-gnu
[2020-02-06 18:58:25] -rwxr-xr-x 1 boinc boinc 5421 feb 6 17:48 run_atlas
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 112 feb 6 17:48 job.xml
[2020-02-06 18:58:25] drwxrwx--x 2 boinc boinc 4096 feb 6 17:49 shared
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 5873 feb 6 17:49 init_data.xml
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 0 feb 6 17:49 boinc_lockfile
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 8513 feb 6 17:50 start_atlas.sh
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 926 feb 6 17:50 RTE.tar.gz
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 275420 feb 6 17:50 input.tar.gz
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 365251149 feb 6 17:50 EVNT.14296418._001447.pool.root.1
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 2958 feb 6 17:50 pandaJob.out
[2020-02-06 18:58:25] drwxr-xr-x 3 boinc boinc 4096 feb 6 17:51 APPS
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 3660913 feb 6 17:51 agis_schedconf.cvmfs.json
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 7858371 feb 6 17:51 agis_ddmendpoints.json
[2020-02-06 18:58:25] drwx------ 3 boinc boinc 4096 feb 6 17:51 pilot2
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 535 feb 6 18:42 boinc_task_state.xml
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 9100611 feb 6 18:57 HITS.000649-1605032-12848._078090.pool.root.1
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 785 feb 6 18:58 memory_monitor_summary.json
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 526567 feb 6 18:58 log.000649-1605032-12848._078090.job.log.tgz.1
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 10987 feb 6 18:58 heartbeat.json
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 8192 feb 6 18:58 boinc_mmap_file
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 26 feb 6 18:58 wrapper_checkpoint.txt
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 8601 feb 6 18:58 pilotlog.txt
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 306907 feb 6 18:58 log.000649-1605032-12848._078090.job.log.1
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 501 feb 6 18:58 j3fNDmLatJwnShfckohDCDFpABFKDmABFKDmyiALDmbEFKDmRNjuwm.diag
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 499 feb 6 18:58 output.list
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 742 feb 6 18:58 runtime_log
[2020-02-06 18:58:25] -rw------- 1 boinc boinc 860160 feb 6 18:58 result.tar.gz
[2020-02-06 18:58:25] -rw-r--r-- 1 boinc boinc 7559 feb 6 18:58 runtime_log.err
[2020-02-06 18:58:25] -rw-r--r-- 2 boinc boinc 28780 feb 6 18:58 stderr.txt
[2020-02-06 18:58:26] HITS file was successfully produced:
[2020-02-06 18:58:26] -rw------- 1 boinc boinc 9100611 feb 6 18:57 shared/HITS.pool.root.1
[2020-02-06 18:58:26] *** Contents of shared directory: ***
[2020-02-06 18:58:26] total 366712
[2020-02-06 18:58:26] -rw-r--r-- 1 boinc boinc 8513 feb 6 17:49 start_atlas.sh
[2020-02-06 18:58:26] -rw-r--r-- 1 boinc boinc 926 feb 6 17:49 RTE.tar.gz
[2020-02-06 18:58:26] -rw-r--r-- 1 boinc boinc 275420 feb 6 17:49 input.tar.gz
[2020-02-06 18:58:26] -rw-r--r-- 1 boinc boinc 365251149 feb 6 17:49 ATLAS.root_0
[2020-02-06 18:58:26] -rw------- 1 boinc boinc 9100611 feb 6 18:57 HITS.pool.root.1
[2020-02-06 18:58:26] -rw------- 1 boinc boinc 860160 feb 6 18:58 result.tar.gz
18:58:26 (28203): run_atlas exited; CPU time 6135.517170
18:58:26 (28203): called boinc_finish(0)
</stderr_txt>
]]>
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