| Name | GH8NDmJatJwnShfckohDCDFpABFKDmABFKDmRejVDmABFKDmKuwGWm_1 |
| Workunit | 1980547 |
| Created | 6 Feb 2020, 13:37:28 UTC |
| Sent | 7 Feb 2020, 7:15:03 UTC |
| Report deadline | 14 Feb 2020, 7:15:03 UTC |
| Received | 7 Feb 2020, 8:26:40 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3717 |
| Run time | 1 hours 9 min 35 sec |
| CPU time | 1 hours 42 min 46 sec |
| Validate state | Valid |
| Credit | 85.17 |
| Device peak FLOPS | 8.81 GFLOPS |
| Application version | ATLAS Simulation v1.03 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.86 GB |
| Peak swap size | 3.12 GB |
| Peak disk usage | 721.94 MB |
Stderr output
<core_client_version>7.12.0</core_client_version>
<![CDATA[
<stderr_txt>
08:16:37 (3529): wrapper (7.7.26015): starting
08:16:37 (3529): wrapper: running run_atlas (--nthreads 2)
[2020-02-07 08:16:37] Arguments: --nthreads 2
[2020-02-07 08:16:37] Threads: 2
[2020-02-07 08:16:37] Checking for CVMFS
[2020-02-07 08:16:50] Probing /cvmfs/atlas.cern.ch... OK
[2020-02-07 08:16:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2020-02-07 08:16:59] Probing /cvmfs/grid.cern.ch... OK
[2020-02-07 08:17:00] Probing /cvmfs/cernvm-prod.cern.ch... OK
[2020-02-07 08:17:02] Probing /cvmfs/sft.cern.ch... OK
[2020-02-07 08:17:06] Probing /cvmfs/alice.cern.ch... OK
[2020-02-07 08:17:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2020-02-07 08:17:07] 2.5.2.0 3676 0 24324 60126 3 1 3863286 4194304 0 65024 0 0 n/a 20938 1835 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2020-02-07 08:17:07] CVMFS is ok
[2020-02-07 08:17:07] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
[2020-02-07 08:17:07] Checking for singularity binary...
[2020-02-07 08:17:07] Singularity is not installed, using version from CVMFS
[2020-02-07 08:17:07] Checking singularity works with /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
[2020-02-07 08:17:58] [34mINFO: [0m Convert SIF file to sandbox... LinAH125 [34mINFO: [0m Cleaning up image...
[2020-02-07 08:17:58] Singularity works
[2020-02-07 08:17:59] Set ATHENA_PROC_NUMBER=2
[2020-02-07 08:17:59] Starting ATLAS job with PandaID=4002876565
[2020-02-07 08:17:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /var/lib/boinc-client/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
[2020-02-07 09:26:09] *** The last 200 lines of the pilot log: ***
[2020-02-07 09:26:09] "cpuTime": 1,
[2020-02-07 09:26:09] "wallTime": 1
[2020-02-07 09:26:09] },
[2020-02-07 09:26:09] "preExe": {
[2020-02-07 09:26:09] "cpuTime": 1,
[2020-02-07 09:26:09] "wallTime": 5
[2020-02-07 09:26:09] },
[2020-02-07 09:26:09] "total": {
[2020-02-07 09:26:09] "cpuTime": 120,
[2020-02-07 09:26:09] "wallTime": 199
[2020-02-07 09:26:09] },
[2020-02-07 09:26:09] "validation": {
[2020-02-07 09:26:09] "cpuTime": 0,
[2020-02-07 09:26:09] "wallTime": 0
[2020-02-07 09:26:09] },
[2020-02-07 09:26:09] "wallTime": 192
[2020-02-07 09:26:09] }
[2020-02-07 09:26:09] },
[2020-02-07 09:26:09] "machine": {
[2020-02-07 09:26:09] "cpu_family": "6",
[2020-02-07 09:26:09] "linux_distribution": [
[2020-02-07 09:26:09] "CentOS Linux",
[2020-02-07 09:26:09] "7.6.1810",
[2020-02-07 09:26:09] "Core"
[2020-02-07 09:26:09] ],
[2020-02-07 09:26:09] "model": "42",
[2020-02-07 09:26:09] "model_name": "Intel(R) Core(TM) i7-2600 CPU @ 3.40GHz",
[2020-02-07 09:26:09] "node": "LinAH125",
[2020-02-07 09:26:09] "platform": "Linux-4.18.0-25-generic-x86_64-with-centos-7.6.1810-Core"
[2020-02-07 09:26:09] },
[2020-02-07 09:26:09] "transform": {
[2020-02-07 09:26:09] "cpuEfficiency": 0.7963,
[2020-02-07 09:26:09] "cpuPWEfficiency": 0.8131,
[2020-02-07 09:26:09] "cpuTime": 11,
[2020-02-07 09:26:09] "cpuTimeTotal": 6218,
[2020-02-07 09:26:09] "externalCpuTime": 41,
[2020-02-07 09:26:09] "processedEvents": 10,
[2020-02-07 09:26:09] "trfPredata": null,
[2020-02-07 09:26:09] "wallTime": 3810
[2020-02-07 09:26:09] }
[2020-02-07 09:26:09] }
[2020-02-07 09:26:09] }
[2020-02-07 09:26:09] 2020-02-07 08:25:37,495 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
[2020-02-07 09:26:09] 2020-02-07 08:25:37,495 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
[2020-02-07 09:26:09] 2020-02-07 08:25:37,496 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
[2020-02-07 09:26:09] 2020-02-07 08:25:37,496 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
[2020-02-07 09:26:09] 2020-02-07 08:25:37,496 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,496 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
[2020-02-07 09:26:09] 2020-02-07 08:25:37,497 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
[2020-02-07 09:26:09] 2020-02-07 08:25:37,497 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -355596877 B to job metrics
[2020-02-07 09:26:09] 2020-02-07 08:25:37,500 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
[2020-02-07 09:26:09] 2020-02-07 08:25:37,500 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
[2020-02-07 09:26:09] 2020-02-07 08:25:37,502 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -75.33 B/s (using 58 data points, chi2=3394421)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,502 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=2 actualCoreCount=1 nEvents=10 leak=-75.33 chi2=3394421"
[2020-02-07 09:26:09] 2020-02-07 08:25:37,502 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,504 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,507 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 66928, 'nprocs': 9, 'nthreads': 1, 'rx_bytes': 46607451, 'wtime': 3870, 'rss': 5895920, 'write_bytes': 0, 'vmem': 8674460, 'read_bytes': 0, 'stime': 82, 'tx_bytes': 14102339, 'pss': 2307939, 'wchar': 0, 'rchar': 0, 'tx_packets': 44436, 'swap': 0, 'utime': 6101}, 'Avg': {'write_bytes': 0, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 12040, 'rx_packets': 17, 'vmem': 6927398, 'read_bytes': 0, 'swap': 0, 'tx_bytes': 3643, 'pss': 1983149, 'wchar': 0, 'rchar': 0, 'tx_packets': 11, 'rss': 4581131}}
[2020-02-07 09:26:09] 2020-02-07 08:25:37,507 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
[2020-02-07 09:26:09] 2020-02-07 08:25:37,507 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
[2020-02-07 09:26:09] 2020-02-07 08:25:37,508 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
[2020-02-07 09:26:09] 2020-02-07 08:25:37,508 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
[2020-02-07 09:26:09] 2020-02-07 08:25:37,508 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 1 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,508 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 4 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,509 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,509 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 4 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,509 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 0 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,509 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 3957 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,510 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 5 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,510 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
[2020-02-07 09:26:09] 2020-02-07 08:25:37,511 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc-client/slots/0/heartbeat.json
[2020-02-07 09:26:09] 2020-02-07 08:25:37,511 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
[2020-02-07 09:26:09] 2020-02-07 08:25:37,512 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
[2020-02-07 09:26:09] 2020-02-07 08:25:37,544 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
[2020-02-07 09:26:09] 2020-02-07 08:25:37,544 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
[2020-02-07 09:26:09] 2020-02-07 08:25:37,545 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
[2020-02-07 09:26:09] 2020-02-07 08:25:37,545 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
[2020-02-07 09:26:09] 2020-02-07 08:25:37,545 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-1604997-28186
[2020-02-07 09:26:09] 2020-02-07 08:25:37,545 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,545 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
[2020-02-07 09:26:09] 2020-02-07 08:25:37,546 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
[2020-02-07 09:26:09] 2020-02-07 08:25:37,546 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
[2020-02-07 09:26:09] 2020-02-07 08:25:37,546 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
[2020-02-07 09:26:09] 2020-02-07 08:25:37,546 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
[2020-02-07 09:26:09] 2020-02-07 08:25:37,546 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
[2020-02-07 09:26:09] 2020-02-07 08:25:37,547 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
[2020-02-07 09:26:09] 2020-02-07 08:25:37,547 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 6205 s
[2020-02-07 09:26:09] 2020-02-07 08:25:37,547 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
[2020-02-07 09:26:09] 2020-02-07 08:25:37,548 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
[2020-02-07 09:26:09] 2020-02-07 08:25:37,548 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 10794
[2020-02-07 09:26:09] 2020-02-07 08:25:37,548 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 10794
[2020-02-07 09:26:09] 2020-02-07 08:25:37,548 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 2
[2020-02-07 09:26:09] 2020-02-07 08:25:37,548 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
[2020-02-07 09:26:09] 2020-02-07 08:25:37,549 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
[2020-02-07 09:26:09] 2020-02-07 08:25:37,549 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
[2020-02-07 09:26:09] 2020-02-07 08:25:37,549 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,549 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,549 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,550 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,550 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,550 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,550 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,551 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,551 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,551 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,551 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,551 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,552 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,552 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,552 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,552 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,552 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,553 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,553 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
[2020-02-07 09:26:09] 2020-02-07 08:25:37,553 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
[2020-02-07 09:26:09] 2020-02-07 08:25:37,561 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/0/PanDA_Pilot-4002876565
[2020-02-07 09:26:09] 2020-02-07 08:25:38,564 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [10794]
[2020-02-07 09:26:09] 2020-02-07 08:25:38,564 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 10794
[2020-02-07 09:26:09] 2020-02-07 08:25:38,565 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
[2020-02-07 09:26:09] 2020-02-07 08:25:39,573 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
[2020-02-07 09:26:09] 2020-02-07 08:25:39,574 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=10794
[2020-02-07 09:26:09] 2020-02-07 08:25:39,668 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [10794] (in reverse order)
[2020-02-07 09:26:09] 2020-02-07 08:25:39,740 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
[2020-02-07 09:26:09] 2020-02-07 08:25:39,740 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
[2020-02-07 09:26:09] 2020-02-07 08:25:39,741 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
[2020-02-07 09:26:09] 2020-02-07 08:25:39,741 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
[2020-02-07 09:26:09] mpi4py not found
[2020-02-07 09:26:09] 2020-02-07 08:25:39,749 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-07 09:26:09] 2020-02-07 08:25:39,749 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
[2020-02-07 09:26:09] 2020-02-07 08:25:39,750 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-07 09:26:09] 2020-02-07 08:25:39,750 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
[2020-02-07 09:26:09] 2020-02-07 08:25:39,751 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
[2020-02-07 09:26:09] 2020-02-07 08:25:39,751 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
[2020-02-07 09:26:09] 2020-02-07 08:25:39,902 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
[2020-02-07 09:26:09] LSB Version: :core-4.1-amd64:core-4.1-noarch
[2020-02-07 09:26:09] Distributor ID: CentOS
[2020-02-07 09:26:09] Description: CentOS Linux release 7.6.1810 (Core)
[2020-02-07 09:26:09] Release: 7.6.1810
[2020-02-07 09:26:09] Codename: Core
[2020-02-07 09:26:09] 2020-02-07 08:25:39,903 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-07 09:26:09] 2020-02-07 08:25:40,405 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/0
[2020-02-07 09:26:09] 2020-02-07 08:25:40,434 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (8805941248 B)
[2020-02-07 09:26:09] 2020-02-07 08:25:40,435 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
[2020-02-07 09:26:09] 2020-02-07 08:25:40,435 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:40,469 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
[2020-02-07 09:26:09] 2020-02-07 08:25:40,595 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:40,655 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
[2020-02-07 09:26:09] 2020-02-07 08:25:40,742 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
[2020-02-07 09:26:09] 2020-02-07 08:25:40,742 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:40,982 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,016 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads
[2020-02-07 09:26:09] 2020-02-07 08:25:41,017 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140394240485184)>, <ExcThread(job, started 140394077804288)>, <ExcThread(validate, started 140394069411584)>, <ExcThread(queue_monitoring, started 140393664464640)>, <ExcThread(job_monitor, started 140393672857344)>, <ExcThread(validate_pre, started 140393656071936)>, <ExcThread(copytool_in, started 140393647679232)>, <ExcThread(failed_post, started 140393211488000)>, <ExcThread(copytool_out, started 140393689642752)>, <ExcThread(queue_monitor, started 140393639286528)>, <ExcThread(payload, started 140394044233472)>, <ExcThread(create_data_payload, started 140394052626176)>]
[2020-02-07 09:26:09] 2020-02-07 08:25:41,061 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,061 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
[2020-02-07 09:26:09] 2020-02-07 08:25:41,062 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,062 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,063 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,074 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,332 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
[2020-02-07 09:26:09] 2020-02-07 08:25:41,333 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,364 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:41,473 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:42,024 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 4 threads
[2020-02-07 09:26:09] 2020-02-07 08:25:42,025 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140394240485184)>, <ExcThread(queue_monitoring, started 140393664464640)>, <ExcThread(job_monitor, started 140393672857344)>, <ExcThread(queue_monitor, started 140393639286528)>]
[2020-02-07 09:26:09] 2020-02-07 08:25:42,534 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
[2020-02-07 09:26:09] 2020-02-07 08:25:42,534 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:43,031 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
[2020-02-07 09:26:09] 2020-02-07 08:25:43,032 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140394240485184)>, <ExcThread(queue_monitoring, started 140393664464640)>, <ExcThread(job_monitor, started 140393672857344)>]
[2020-02-07 09:26:09] 2020-02-07 08:25:43,481 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
[2020-02-07 09:26:09] 2020-02-07 08:25:46,483 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:25:47,059 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
[2020-02-07 09:26:09] 2020-02-07 08:25:47,059 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140394240485184)>, <ExcThread(job_monitor, started 140393672857344)>]
[2020-02-07 09:26:09] 2020-02-07 08:26:05,107 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s)
[2020-02-07 09:26:09] 2020-02-07 08:26:05,107 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
[2020-02-07 09:26:09] 2020-02-07 08:26:05,617 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
[2020-02-07 09:26:09] 2020-02-07 08:26:05,617 | INFO | MainThread | root | wrap_up | traces error code: 0
[2020-02-07 09:26:09] 2020-02-07 08:26:05,618 | INFO | MainThread | root | wrap_up | pilot has finished
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] ==== pilot stdout END ====
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] ==== wrapper stdout RESUME ====
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] Pilot exit status: 0
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] STATUSCODE: 0
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] apfmon messages muted
[2020-02-07 09:26:09] ---- find pandaID.out ----
[2020-02-07 09:26:09] total 64
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 11357 Jul 25 2019 LICENSE
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 2212 Nov 14 11:01 README.md
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 221 Jul 25 2019 TODO.md
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 11 Feb 7 08:19 pandaIDs.out
[2020-02-07 09:26:09] drwx------ 14 boinc boinc 4096 Feb 7 08:19 pilot
[2020-02-07 09:26:09] -rwx------ 1 boinc boinc 21225 Dec 12 19:00 pilot.py
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 766 Oct 10 16:01 setup.py
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 11 Feb 7 08:19 /var/lib/boinc-client/slots/0/pilot2/pandaIDs.out
[2020-02-07 09:26:09] 4002876565
[2020-02-07 09:26:09]
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] Test setup, not cleaning
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] ==== wrapper stdout END ====
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] ==== wrapper stderr END ====
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] wrapper wrapperexiting ec=0, duration=4042
[2020-02-07 09:26:09] 2020-02-07 08:26:05 UTC [wrapper] apfmon messages muted
[2020-02-07 09:26:09] *** Error codes and diagnostics ***
[2020-02-07 09:26:09] "exeErrorCode": 0,
[2020-02-07 09:26:09] "exeErrorDiag": "",
[2020-02-07 09:26:09] "pilotErrorCode": 0,
[2020-02-07 09:26:09] "pilotErrorDiag": "",
[2020-02-07 09:26:09] *** Listing of results directory ***
[2020-02-07 09:26:09] total 379212
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 267260 feb 6 11:21 pilot2.tar.gz
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 4492 feb 6 11:28 queuedata.json
[2020-02-07 09:26:09] -rwx------ 1 boinc boinc 12641 feb 6 11:29 runpilot2-wrapper.sh
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 107 feb 7 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2020-02-07 09:26:09] -rwxr-xr-x 1 boinc boinc 5573 feb 7 08:16 run_atlas
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 112 feb 7 08:16 job.xml
[2020-02-07 09:26:09] drwxrwx--x 2 boinc boinc 4096 feb 7 08:16 shared
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 5874 feb 7 08:16 init_data.xml
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 0 feb 7 08:16 boinc_lockfile
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 8553 feb 7 08:17 start_atlas.sh
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 926 feb 7 08:17 RTE.tar.gz
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 275411 feb 7 08:17 input.tar.gz
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 365251149 feb 7 08:17 EVNT.14296418._001447.pool.root.1
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 2958 feb 7 08:17 pandaJob.out
[2020-02-07 09:26:09] drwxr-xr-x 3 boinc boinc 4096 feb 7 08:18 APPS
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 3660939 feb 7 08:19 agis_schedconf.cvmfs.json
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 7858371 feb 7 08:19 agis_ddmendpoints.json
[2020-02-07 09:26:09] drwx------ 3 boinc boinc 4096 feb 7 08:19 pilot2
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 535 feb 7 09:10 boinc_task_state.xml
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 9100601 feb 7 09:24 HITS.000649-1604997-28186._078090.pool.root.1
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 785 feb 7 09:25 memory_monitor_summary.json
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 525303 feb 7 09:25 log.000649-1604997-28186._078090.job.log.tgz.1
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 10985 feb 7 09:25 heartbeat.json
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 8438 feb 7 09:26 pilotlog.txt
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 309574 feb 7 09:26 log.000649-1604997-28186._078090.job.log.1
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 501 feb 7 09:26 GH8NDmJatJwnShfckohDCDFpABFKDmABFKDmRejVDmABFKDmKuwGWm.diag
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 499 feb 7 09:26 output.list
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 742 feb 7 09:26 runtime_log
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 860160 feb 7 09:26 result.tar.gz
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 7639 feb 7 09:26 runtime_log.err
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 8192 feb 7 09:26 boinc_mmap_file
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 26 feb 7 09:26 wrapper_checkpoint.txt
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 30877 feb 7 09:26 stderr.txt
[2020-02-07 09:26:09] HITS file was successfully produced:
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 9100601 feb 7 09:24 shared/HITS.pool.root.1
[2020-02-07 09:26:09] *** Contents of shared directory: ***
[2020-02-07 09:26:09] total 366712
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 8553 feb 7 08:16 start_atlas.sh
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 926 feb 7 08:16 RTE.tar.gz
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 275411 feb 7 08:16 input.tar.gz
[2020-02-07 09:26:09] -rw-r--r-- 1 boinc boinc 365251149 feb 7 08:16 ATLAS.root_0
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 9100601 feb 7 09:24 HITS.pool.root.1
[2020-02-07 09:26:09] -rw------- 1 boinc boinc 860160 feb 7 09:26 result.tar.gz
09:26:11 (3529): run_atlas exited; CPU time 6166.300647
09:26:11 (3529): called boinc_finish(0)
</stderr_txt>
]]>
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