| Name | h6YKDmHO3JwnShfckohDCDFpABFKDmABFKDmyiALDmjEFKDmoNxBYn_1 |
| Workunit | 1980752 |
| Created | 7 Feb 2020, 19:58:24 UTC |
| Sent | 9 Feb 2020, 5:41:48 UTC |
| Report deadline | 16 Feb 2020, 5:41:48 UTC |
| Received | 9 Feb 2020, 6:39:22 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 4064 |
| Run time | 55 min 49 sec |
| CPU time | 1 hours 14 min 20 sec |
| Validate state | Valid |
| Credit | 30.67 |
| Device peak FLOPS | 3.96 GFLOPS |
| Application version | ATLAS Simulation v1.03 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.78 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 719.44 MB |
Stderr output
<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
06:43:19 (1171): wrapper (7.7.26015): starting
06:43:19 (1171): wrapper: running run_atlas (--nthreads 2)
[2020-02-09 06:43:19] Arguments: --nthreads 2
[2020-02-09 06:43:19] Threads: 2
[2020-02-09 06:43:19] Checking for CVMFS
[2020-02-09 06:43:19] Probing /cvmfs/atlas.cern.ch... OK
[2020-02-09 06:43:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2020-02-09 06:43:20] Probing /cvmfs/grid.cern.ch... OK
[2020-02-09 06:43:20] Probing /cvmfs/cernvm-prod.cern.ch... OK
[2020-02-09 06:43:20] Probing /cvmfs/sft.cern.ch... OK
[2020-02-09 06:43:20] Probing /cvmfs/alice.cern.ch... OK
[2020-02-09 06:43:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2020-02-09 06:43:21] 2.7.0.0 3672 391 48748 60209 1 61 4133646 4194305 588 65024 0 193286 99.9395 191175 3639 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2020-02-09 06:43:21] CVMFS is ok
[2020-02-09 06:43:21] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
[2020-02-09 06:43:21] Checking for singularity binary...
[2020-02-09 06:43:21] Using singularity found in PATH at /usr/bin/singularity
[2020-02-09 06:43:21] Running /usr/bin/singularity --version
[2020-02-09 06:43:21] singularity version 3.5.2-1.1.el7
[2020-02-09 06:43:21] Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
[2020-02-09 06:43:21] FX8S
[2020-02-09 06:43:21] Singularity works
[2020-02-09 06:43:22] Set ATHENA_PROC_NUMBER=2
[2020-02-09 06:43:22] Starting ATLAS job with PandaID=4002876565
[2020-02-09 06:43:22] Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/1 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh
[2020-02-09 07:39:04] *** The last 200 lines of the pilot log: ***
[2020-02-09 07:39:04] }
[2020-02-09 07:39:04] },
[2020-02-09 07:39:04] "postExe": {
[2020-02-09 07:39:04] "cpuTime": 2,
[2020-02-09 07:39:04] "wallTime": 1
[2020-02-09 07:39:04] },
[2020-02-09 07:39:04] "preExe": {
[2020-02-09 07:39:04] "cpuTime": 4,
[2020-02-09 07:39:04] "wallTime": 12
[2020-02-09 07:39:04] },
[2020-02-09 07:39:04] "total": {
[2020-02-09 07:39:04] "cpuTime": 164,
[2020-02-09 07:39:04] "wallTime": 338
[2020-02-09 07:39:04] },
[2020-02-09 07:39:04] "validation": {
[2020-02-09 07:39:04] "cpuTime": 0,
[2020-02-09 07:39:04] "wallTime": 0
[2020-02-09 07:39:04] },
[2020-02-09 07:39:04] "wallTime": 325
[2020-02-09 07:39:04] }
[2020-02-09 07:39:04] },
[2020-02-09 07:39:04] "machine": {
[2020-02-09 07:39:04] "cpu_family": "21",
[2020-02-09 07:39:04] "linux_distribution": [
[2020-02-09 07:39:04] "CentOS Linux",
[2020-02-09 07:39:04] "7.6.1810",
[2020-02-09 07:39:04] "Core"
[2020-02-09 07:39:04] ],
[2020-02-09 07:39:04] "model": "2",
[2020-02-09 07:39:04] "model_name": "AMD FX-8370E Eight-Core Processor",
[2020-02-09 07:39:04] "node": "FX8S",
[2020-02-09 07:39:04] "platform": "Linux-3.10.0-1062.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
[2020-02-09 07:39:04] },
[2020-02-09 07:39:04] "transform": {
[2020-02-09 07:39:04] "cpuEfficiency": 0.7066,
[2020-02-09 07:39:04] "cpuPWEfficiency": 0.7345,
[2020-02-09 07:39:04] "cpuTime": 18,
[2020-02-09 07:39:04] "cpuTimeTotal": 4660,
[2020-02-09 07:39:04] "externalCpuTime": 29,
[2020-02-09 07:39:04] "processedEvents": 10,
[2020-02-09 07:39:04] "trfPredata": null,
[2020-02-09 07:39:04] "wallTime": 3175
[2020-02-09 07:39:04] }
[2020-02-09 07:39:04] }
[2020-02-09 07:39:04] }
[2020-02-09 07:39:04] 2020-02-09 06:38:54,863 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | update_server | xml:will send fileinfo
[2020-02-09 07:39:04] 2020-02-09 06:38:54,863 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
[2020-02-09 07:39:04] 2020-02-09 06:38:54,863 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
[2020-02-09 07:39:04] 2020-02-09 06:38:54,863 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
[2020-02-09 07:39:04] 2020-02-09 06:38:54,864 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | pilot will not update the server (heartbeat message will be written to file)
[2020-02-09 07:39:04] 2020-02-09 06:38:54,864 | INFO | queue_monitor | pilot.control.job.4002876565 | send_state | job 4002876565 has finished - writing final server update
[2020-02-09 07:39:04] 2020-02-09 06:38:54,864 | DEBUG | queue_monitor | pilot.control.job.4002876565 | get_data_structure | building data structure to be sent to server with heartbeat
[2020-02-09 07:39:04] 2020-02-09 06:38:54,864 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | will not add max space = -353188429 B to job metrics
[2020-02-09 07:39:04] 2020-02-09 06:38:54,866 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
[2020-02-09 07:39:04] 2020-02-09 06:38:54,866 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
[2020-02-09 07:39:04] 2020-02-09 06:38:54,867 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -105.98 B/s (using 46 data points, chi2=7282370)
[2020-02-09 07:39:04] 2020-02-09 06:38:54,867 | DEBUG | queue_monitor | pilot.util.auxiliary.4002876565 | get_job_metrics | job metrics="coreCount=2 actualCoreCount=3 nEvents=10 leak=-105.98 chi2=7282370"
[2020-02-09 07:39:04] 2020-02-09 06:38:54,867 | INFO | queue_monitor | pilot.control.job.4002876565 | get_data_structure | total number of processed events: 10 (read)
[2020-02-09 07:39:04] 2020-02-09 06:38:54,869 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc/slots/1/PanDA_Pilot-4002876565/memory_monitor_summary.json (trf name=prmon)
[2020-02-09 07:39:04] 2020-02-09 06:38:54,871 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 67457, 'nprocs': 10, 'nthreads': 1, 'rx_bytes': 60018125, 'wtime': 3219, 'rss': 5673184, 'write_bytes': 15269888, 'vmem': 8699640, 'read_bytes': 3129992192, 'stime': 148, 'tx_bytes': 21018225, 'pss': 2205151, 'wchar': 21448159, 'rchar': 1107835730, 'tx_packets': 33578, 'swap': 0, 'utime': 4420}, 'Avg': {'write_bytes': 4742, 'nprocs': 6, 'nthreads': 0, 'rx_bytes': 18639, 'rx_packets': 20, 'vmem': 6290018, 'read_bytes': 972050, 'swap': 0, 'tx_bytes': 6527, 'pss': 1694575, 'wchar': 6660, 'rchar': 344049, 'tx_packets': 10, 'rss': 3861425}}
[2020-02-09 07:39:04] 2020-02-09 06:38:54,871 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
[2020-02-09 07:39:04] 2020-02-09 06:38:54,871 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
[2020-02-09 07:39:04] 2020-02-09 06:38:54,871 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
[2020-02-09 07:39:04] 2020-02-09 06:38:54,871 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . Timing measurements:
[2020-02-09 07:39:04] 2020-02-09 06:38:54,871 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . get job = 0 s
[2020-02-09 07:39:04] 2020-02-09 06:38:54,872 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . initial setup = 2 s
[2020-02-09 07:39:04] 2020-02-09 06:38:54,872 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload setup = 0 s
[2020-02-09 07:39:04] 2020-02-09 06:38:54,872 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . total setup = 2 s
[2020-02-09 07:39:04] 2020-02-09 06:38:54,872 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-in = 4 s
[2020-02-09 07:39:04] 2020-02-09 06:38:54,872 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . payload execution = 3282 s
[2020-02-09 07:39:04] 2020-02-09 06:38:54,872 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | . stage-out = 4 s
[2020-02-09 07:39:04] 2020-02-09 06:38:54,872 | INFO | queue_monitor | pilot.util.auxiliary.4002876565 | timing_report | ..............................
[2020-02-09 07:39:04] 2020-02-09 06:38:54,873 | DEBUG | queue_monitor | pilot.control.job.4002876565 | send_state | wrote heartbeat to file /var/lib/boinc/slots/1/heartbeat.json
[2020-02-09 07:39:04] 2020-02-09 06:38:54,874 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 4002876565 was dequeued from the monitored payloads queue
[2020-02-09 07:39:04] 2020-02-09 06:38:54,874 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
[2020-02-09 07:39:04] 2020-02-09 06:38:55,369 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
[2020-02-09 07:39:04] 2020-02-09 06:38:55,369 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | job summary report
[2020-02-09 07:39:04] 2020-02-09 06:38:55,369 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
[2020-02-09 07:39:04] 2020-02-09 06:38:55,369 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | PanDA job id: 4002876565
[2020-02-09 07:39:04] 2020-02-09 06:38:55,369 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | task id: 000649-1749413-23775
[2020-02-09 07:39:04] 2020-02-09 06:38:55,369 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | errors: (none)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,370 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | status: LOG_TRANSFER = DONE
[2020-02-09 07:39:04] 2020-02-09 06:38:55,370 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pilot state: finished
[2020-02-09 07:39:04] 2020-02-09 06:38:55,370 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | transexitcode: 0
[2020-02-09 07:39:04] 2020-02-09 06:38:55,370 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrorcode: 0
[2020-02-09 07:39:04] 2020-02-09 06:38:55,370 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exeerrordiag:
[2020-02-09 07:39:04] 2020-02-09 06:38:55,370 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitcode: 0
[2020-02-09 07:39:04] 2020-02-09 06:38:55,371 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | exitmsg: OK
[2020-02-09 07:39:04] 2020-02-09 06:38:55,371 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | cpuconsumptiontime: 4603 s
[2020-02-09 07:39:04] 2020-02-09 06:38:55,371 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | nevents: 10
[2020-02-09 07:39:04] 2020-02-09 06:38:55,371 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | neventsw: 0
[2020-02-09 07:39:04] 2020-02-09 06:38:55,371 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pid: 8180
[2020-02-09 07:39:04] 2020-02-09 06:38:55,371 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | pgrp: 8180
[2020-02-09 07:39:04] 2020-02-09 06:38:55,371 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | corecount: 2
[2020-02-09 07:39:04] 2020-02-09 06:38:55,372 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | event service: False
[2020-02-09 07:39:04] 2020-02-09 06:38:55,372 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report | --------------------------------------------------
[2020-02-09 07:39:04] 2020-02-09 06:38:55,372 | INFO | retrieve | pilot.util.auxiliary.4002876565 | make_job_report |
[2020-02-09 07:39:04] 2020-02-09 06:38:55,372 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,372 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,372 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,373 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,373 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,373 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,373 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,373 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,373 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,373 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,374 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,374 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,374 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,374 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,374 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,374 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,375 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,375 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,375 | INFO | retrieve | pilot.control.job.4002876565 | has_job_completed | job 4002876565 has completed (purged errors)
[2020-02-09 07:39:04] 2020-02-09 06:38:55,375 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
[2020-02-09 07:39:04] 2020-02-09 06:38:55,382 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/1/PanDA_Pilot-4002876565
[2020-02-09 07:39:04] 2020-02-09 06:38:56,385 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [8180]
[2020-02-09 07:39:04] 2020-02-09 06:38:56,385 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 8180
[2020-02-09 07:39:04] 2020-02-09 06:38:56,386 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
[2020-02-09 07:39:04] 2020-02-09 06:38:57,408 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
[2020-02-09 07:39:04] 2020-02-09 06:38:57,408 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=8180
[2020-02-09 07:39:04] 2020-02-09 06:38:57,546 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [8180] (in reverse order)
[2020-02-09 07:39:04] 2020-02-09 06:38:57,654 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
[2020-02-09 07:39:04] 2020-02-09 06:38:57,654 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
[2020-02-09 07:39:04] 2020-02-09 06:38:57,654 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
[2020-02-09 07:39:04] 2020-02-09 06:38:57,654 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
[2020-02-09 07:39:04] mpi4py not found
[2020-02-09 07:39:04] 2020-02-09 06:38:57,660 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-09 07:39:04] 2020-02-09 06:38:57,660 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.3.4 (12) ***
[2020-02-09 07:39:04] 2020-02-09 06:38:57,660 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-09 07:39:04] 2020-02-09 06:38:57,660 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
[2020-02-09 07:39:04] 2020-02-09 06:38:57,660 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
[2020-02-09 07:39:04] 2020-02-09 06:38:57,661 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
[2020-02-09 07:39:04] 2020-02-09 06:38:57,911 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
[2020-02-09 07:39:04] LSB Version: :core-4.1-amd64:core-4.1-noarch
[2020-02-09 07:39:04] Distributor ID: CentOS
[2020-02-09 07:39:04] Description: CentOS Linux release 7.6.1810 (Core)
[2020-02-09 07:39:04] Release: 7.6.1810
[2020-02-09 07:39:04] Codename: Core
[2020-02-09 07:39:04] 2020-02-09 06:38:57,911 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ****************************************
[2020-02-09 07:39:04] 2020-02-09 06:38:58,439 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/1
[2020-02-09 07:39:04] 2020-02-09 06:38:58,465 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (8406433792 B)
[2020-02-09 07:39:04] 2020-02-09 06:38:58,466 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
[2020-02-09 07:39:04] 2020-02-09 06:38:58,466 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:58,491 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
[2020-02-09 07:39:04] 2020-02-09 06:38:58,491 | WARNING | monitor | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set
[2020-02-09 07:39:04] 2020-02-09 06:38:58,491 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
[2020-02-09 07:39:04] 2020-02-09 06:38:58,539 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
[2020-02-09 07:39:04] 2020-02-09 06:38:58,540 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:58,655 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
[2020-02-09 07:39:04] 2020-02-09 06:38:58,655 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:58,711 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,165 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
[2020-02-09 07:39:04] 2020-02-09 06:38:59,166 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,313 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 11 threads
[2020-02-09 07:39:04] 2020-02-09 06:38:59,313 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140098497480512)>, <ExcThread(queue_monitoring, started 140098041526016)>, <ExcThread(failed_post, started 140097462724352)>, <ExcThread(validate_pre, started 140098049918720)>, <ExcThread(execute_payloads, started 140097454331648)>, <ExcThread(copytool_in, started 140098024740608)>, <ExcThread(queue_monitor, started 140098058311424)>, <ExcThread(copytool_out, started 140098300503808)>, <ExcThread(job_monitor, started 140098066704128)>, <ExcThread(create_data_payload, started 140098308896512)>, <ExcThread(validate, started 140098325681920)>]
[2020-02-09 07:39:04] 2020-02-09 06:38:59,399 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,492 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,646 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s)
[2020-02-09 07:39:04] 2020-02-09 06:38:59,646 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,693 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,694 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,696 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,697 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,758 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:38:59,915 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
[2020-02-09 07:39:04] 2020-02-09 06:38:59,915 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:39:00,320 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
[2020-02-09 07:39:04] 2020-02-09 06:39:00,320 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140098497480512)>, <ExcThread(queue_monitoring, started 140098041526016)>]
[2020-02-09 07:39:04] 2020-02-09 06:39:00,378 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
[2020-02-09 07:39:04] 2020-02-09 06:39:03,394 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
[2020-02-09 07:39:04] 2020-02-09 06:39:04,366 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
[2020-02-09 07:39:04] 2020-02-09 06:39:04,367 | INFO | MainThread | root | wrap_up | traces error code: 0
[2020-02-09 07:39:04] 2020-02-09 06:39:04,367 | INFO | MainThread | root | wrap_up | pilot has finished
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] ==== pilot stdout END ====
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] ==== wrapper stdout RESUME ====
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] Pilot exit status: 0
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] STATUSCODE: 0
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] apfmon messages muted
[2020-02-09 07:39:04] ---- find pandaID.out ----
[2020-02-09 07:39:04] total 60
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 11357 Jul 25 2019 LICENSE
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 20 Sep 9 13:04 MANIFEST.IN
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 8 Dec 12 19:00 PILOTVERSION
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 2212 Nov 14 11:01 README.md
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 221 Jul 25 2019 TODO.md
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 11 Feb 9 06:43 pandaIDs.out
[2020-02-09 07:39:04] drwx------. 14 boinc boinc 216 Feb 9 06:43 pilot
[2020-02-09 07:39:04] -rwx------. 1 boinc boinc 21225 Dec 12 19:00 pilot.py
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 766 Oct 10 16:01 setup.py
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 11 Feb 9 06:43 /var/lib/boinc/slots/1/pilot2/pandaIDs.out
[2020-02-09 07:39:04] 4002876565
[2020-02-09 07:39:04]
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] Test setup, not cleaning
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] ==== wrapper stdout END ====
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] ==== wrapper stderr END ====
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] wrapper wrapperexiting ec=0, duration=3341
[2020-02-09 07:39:04] 2020-02-09 06:39:04 UTC [wrapper] apfmon messages muted
[2020-02-09 07:39:04] *** Error codes and diagnostics ***
[2020-02-09 07:39:04] "exeErrorCode": 0,
[2020-02-09 07:39:04] "exeErrorDiag": "",
[2020-02-09 07:39:04] "pilotErrorCode": 0,
[2020-02-09 07:39:04] "pilotErrorDiag": "",
[2020-02-09 07:39:04] *** Listing of results directory ***
[2020-02-09 07:39:04] insgesamt 379008
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 267260 6. Feb 21:30 pilot2.tar.gz
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 4492 6. Feb 21:55 queuedata.json
[2020-02-09 07:39:04] -rwx------. 1 boinc boinc 12641 6. Feb 21:57 runpilot2-wrapper.sh
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 107 9. Feb 06:43 wrapper_26015_x86_64-pc-linux-gnu
[2020-02-09 07:39:04] -rwxr-xr-x. 1 boinc boinc 5573 9. Feb 06:43 run_atlas
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 112 9. Feb 06:43 job.xml
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 5902 9. Feb 06:43 init_data.xml
[2020-02-09 07:39:04] drwxrwx--x. 2 boinc boinc 86 9. Feb 06:43 shared
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 0 9. Feb 06:43 boinc_lockfile
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 926 9. Feb 06:43 RTE.tar.gz
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 275418 9. Feb 06:43 input.tar.gz
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 365251149 9. Feb 06:43 EVNT.14296418._001447.pool.root.1
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 8513 9. Feb 06:43 start_atlas.sh
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 2958 9. Feb 06:43 pandaJob.out
[2020-02-09 07:39:04] drwxr-xr-x. 3 boinc boinc 17 9. Feb 06:43 APPS
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 3641907 9. Feb 06:43 agis_schedconf.cvmfs.json
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 7859698 9. Feb 06:43 agis_ddmendpoints.json
[2020-02-09 07:39:04] drwx------. 3 boinc boinc 229 9. Feb 06:43 pilot2
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 535 9. Feb 07:25 boinc_task_state.xml
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 9044921 9. Feb 07:38 HITS.000649-1749413-23775._078090.pool.root.1
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 26 9. Feb 07:38 wrapper_checkpoint.txt
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 8192 9. Feb 07:38 boinc_mmap_file
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 835 9. Feb 07:38 memory_monitor_summary.json
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 517493 9. Feb 07:38 log.000649-1749413-23775._078090.job.log.tgz.1
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 12341 9. Feb 07:38 heartbeat.json
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 7636 9. Feb 07:39 pilotlog.txt
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 260792 9. Feb 07:39 log.000649-1749413-23775._078090.job.log.1
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 488 9. Feb 07:39 h6YKDmHO3JwnShfckohDCDFpABFKDmABFKDmyiALDmjEFKDmoNxBYn.diag
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 7241 9. Feb 07:39 runtime_log.err
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 499 9. Feb 07:39 output.list
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 742 9. Feb 07:39 runtime_log
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 798720 9. Feb 07:39 result.tar.gz
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 30051 9. Feb 07:39 stderr.txt
[2020-02-09 07:39:04] HITS file was successfully produced:
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 9044921 9. Feb 07:38 shared/HITS.pool.root.1
[2020-02-09 07:39:04] *** Contents of shared directory: ***
[2020-02-09 07:39:04] insgesamt 366596
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 365251149 9. Feb 06:43 ATLAS.root_0
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 275418 9. Feb 06:43 input.tar.gz
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 8513 9. Feb 06:43 start_atlas.sh
[2020-02-09 07:39:04] -rw-r--r--. 1 boinc boinc 926 9. Feb 06:43 RTE.tar.gz
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 9044921 9. Feb 07:38 HITS.pool.root.1
[2020-02-09 07:39:04] -rw-------. 1 boinc boinc 798720 9. Feb 07:39 result.tar.gz
07:39:06 (1171): run_atlas exited; CPU time 4460.954529
07:39:06 (1171): called boinc_finish(0)
</stderr_txt>
]]>
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