Name | TWIMDm77vgynfZGDcpSWOuwoABFKDmABFKDm2IFNDmCCFKDmxmKZPm_0 |
Workunit | 2063636 |
Created | 18 Mar 2021, 0:55:47 UTC |
Sent | 18 Mar 2021, 0:58:04 UTC |
Report deadline | 25 Mar 2021, 0:58:04 UTC |
Received | 18 Mar 2021, 1:10:34 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4389 |
Run time | 11 min 1 sec |
CPU time | 8 min 14 sec |
Validate state | Valid |
Credit | 1.53 |
Device peak FLOPS | 1.00 GFLOPS |
Application version | ATLAS long simulation v1.00 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.41 GB |
Peak swap size | 2.13 GB |
Peak disk usage | 87.07 MB |
<core_client_version>7.16.11</core_client_version> <![CDATA[ <stderr_txt> 02:58:20 (26470): wrapper (7.7.26015): starting 02:58:20 (26470): wrapper: running run_atlas (--nthreads 1) [2021-03-18 02:58:20] Arguments: --nthreads 1 [2021-03-18 02:58:20] Threads: 1 [2021-03-18 02:58:20] Checking for CVMFS [2021-03-18 02:58:24] Probing /cvmfs/atlas.cern.ch... OK [2021-03-18 02:58:25] Probing /cvmfs/atlas-condb.cern.ch... OK [2021-03-18 02:58:26] Probing /cvmfs/grid.cern.ch... OK [2021-03-18 02:58:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2021-03-18 02:58:26] 2.8.0.0 26671 0 28376 80985 3 1 3746676 4096001 0 130560 0 0 n/a 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1 [2021-03-18 02:58:26] CVMFS is ok [2021-03-18 02:58:26] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img [2021-03-18 02:58:26] Checking for singularity binary... [2021-03-18 02:58:26] Using singularity found in PATH at /usr/bin/singularity [2021-03-18 02:58:26] Running /usr/bin/singularity --version [2021-03-18 02:58:27] singularity version 3.7.1-1.el7 [2021-03-18 02:58:27] Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname [2021-03-18 02:58:27] CentOS7 [2021-03-18 02:58:27] Singularity works [2021-03-18 02:58:27] Starting ATLAS job with PandaID=5002531443 [2021-03-18 02:58:27] Running command: /usr/bin/singularity exec --pwd /var/lib/BASE/BOINC00/slots/1 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh [2021-03-18 03:09:19] *** The last 200 lines of the pilot log: *** [2021-03-18 03:09:19] "cpuTimeTotal": 482, [2021-03-18 03:09:19] "externalCpuTime": 2, [2021-03-18 03:09:19] "processedEvents": 2, [2021-03-18 03:09:19] "trfPredata": null, [2021-03-18 03:09:19] "wallTime": 584 [2021-03-18 03:09:19] } [2021-03-18 03:09:19] } [2021-03-18 03:09:19] } [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | DEBUG | queue_monitor | pilot.user.atlas.common | update_server | no need to update logstash for this job [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | INFO | queue_monitor | pilot.control.job | send_state | pilot will not update the server (heartbeat message will be written to file) [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | INFO | queue_monitor | pilot.control.job | send_state | job 5002531443 has finished - writing final server update [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | DEBUG | queue_monitor | pilot.control.job | get_data_structure | building data structure to be sent to server with heartbeat [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | job definition core count: 1 [2021-03-18 03:09:19] 2021-03-18 01:08:59,094 | INFO | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | will not add max space = -37139005 B to job metrics [2021-03-18 03:09:19] 2021-03-18 01:08:59,095 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted [2021-03-18 03:09:19] 2021-03-18 01:08:59,095 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1616029441.0, 1616029502.0, 1616029563.0], y=[1567760.0, 1576052.0, 1578708.0] (must be same and length>=4) [2021-03-18 03:09:19] 2021-03-18 01:08:59,095 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics | job metrics="actualCoreCount=4 nEvents=2 dbTime=29.15 dbData=4274626" [2021-03-18 03:09:19] 2021-03-18 01:08:59,095 | INFO | queue_monitor | pilot.control.job | get_data_structure | mean actualcorecount: 3.125000 [2021-03-18 03:09:19] 2021-03-18 01:08:59,095 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 2 (read) [2021-03-18 03:09:19] 2021-03-18 01:08:59,096 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/BASE/BOINC00/slots/1/PanDA_Pilot-5002531443/memory_monitor_summary.json (trf name=prmon) [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 10990, 'nprocs': 5, 'nthreads': 6, 'rx_bytes': 9521150, 'wtime': 552, 'rss': 1585976, 'write_bytes': 2129920, 'vmem': 2916344, 'read_bytes': 1681466368, 'stime': 12, 'tx_bytes': 3653353, 'pss': 1578708, 'wchar': 5450725, 'rchar': 574264195, 'tx_packets': 7382, 'swap': 0, 'utime': 445}, 'Avg': {'write_bytes': 3851.0, 'nprocs': 4.799, 'nthreads': 5.7, 'rx_bytes': 17218.0, 'rx_packets': 19.874, 'vmem': 2392638.0, 'read_bytes': 3040846.0, 'swap': 0.0, 'tx_bytes': 6606.0, 'pss': 1185153.0, 'wchar': 9857.0, 'rchar': 1038527.0, 'tx_packets': 13.349, 'rss': 1191850.0}, 'HW': {'mem': {'MemTotal': 3879940}, 'cpu': {'CoresPerSocket': 4, 'ModelName': 'Intel(R) Core(TM) i5-4440 CPU @ 3.10GHz', 'ThreadsPerCore': 1, 'CPUs': 4, 'Sockets': 1}}, 'prmon': {'Version': '2.2.0'}} [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | .............................. [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | . Timing measurements: [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | . get job = 0 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | . initial setup = 0 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload setup = 11 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | . total setup = 11 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-in = 0 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,097 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload execution = 604 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,098 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-out = 0 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,098 | INFO | queue_monitor | pilot.util.timing | timing_report | .............................. [2021-03-18 03:09:19] 2021-03-18 01:08:59,098 | DEBUG | queue_monitor | pilot.control.job | send_state | is_harvester_mode(args) : False [2021-03-18 03:09:19] 2021-03-18 01:08:59,098 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'pilotErrorCode': 0, 'rateWBYTES': 3851.0, 'pilotID': 'http://aipanda403.cern.ch/data/jobs/2021-03-18/BOINC-TEST/5002531443.out|PR|2.9.6 (20)', 'meanCoreCount': 3.125, 'totRBYTES': 1681466368, 'siteName': 'BOINC-TEST', 'avgVMEM': 2392638.0, 'coreCount': 1, 'totWCHAR': 5450725, 'rateRCHAR': 1038527.0, 'jobId': '5002531443', 'totRCHAR': 574264195, 'exeErrorCode': 0, 'rateWCHAR': 9857.0, 'metaData': '{\n "cmdLine": "\'/cvmfs/atlas.cern.ch/repo/sw/software/21.0/AtlasOffline/21.0.16/InstallArea/x86_64-slc6-gcc49-opt/share/Sim_tf.py\' \'--maxEvents=2\' \'--skipEvents=0\' \'--firstEvent=118001\' \'--randomSeed=119\' \'--DBRelease=all:current\' \'--geometryVersion=default:ATLAS-R2-2016-01-00-01_VALIDATION\' \'--conditionsTag\' \'default:OFLCOND-MC16-SDR-14\' \'--physicsList=FTFP_BERT_ATL_VALIDATION\' \'--preExec\' \'EVNTtoHITS:simFlags.SimBarcodeOffset.set_Value_and_Lock(200000)\' \'EVNTtoHITS:simFlags.TRTRangeCut=30.0;simFlags.TightMuonStepping=True\' \'--postInclude\' \'default:RecJobTransforms/UseFrontier.py\' \'--simulator=FullG4\' \'--truthStrategy=MC15aPlus\' \'--DataRunNumber=361106\' \'--outputHitsFile\' \'Hits.hc_20198160.BOINC-TEST.45d50b2c-af4c-4871-969c-7fc97e46e739_34846.HITS.pool.root\' \'--inputEvgenFile\' \'EVNT.04972714._000023.pool.root.1\'", \n "created": "2021-03-18T03:08:48", \n "executor": [\n {\n "asetup": null, \n "errMsg": "", \n "exeConfig": {\n "inputs": [\n "EVNT"\n ], \n "outputs": [\n "HITS"\n ], \n "script": "athena.py", \n "substep": "sim"\n }, \n "logfileReport": {\n "countSummary": {\n "CATASTROPHE": 0, \n "CRITICAL": 0, \n "DEBUG": 0, \n "ERROR": 0, \n "FATAL": 0, \n "IGNORED": 0, \n "INFO": 2772, \n "UNKNOWN": 6335, \n "VERBOSE": 0, \n "WARNING": 31\n }, \n "details": {}\n }, \n "metaData": {}, \n "name": "EVNTtoHITS", \n "rc": 0, \n "statusOK": true, \n "validation": true\n }\n ], \n "exitAcronym": "OK", \n "exitCode": 0, \n "exitMsg": "OK", \n "exitMsgExtra": "", \n "files": {\n "input": [\n {\n "dataset": null, \n "nentries": 1000, \n "subFiles": [\n {\n "file_guid": "527922C2-75F2-064D-A171-672D7A39A6CB", \n "name": "EVNT.04972714._000023.pool.root.1"\n }\n ], \n "type": "EVNT"\n }\n ], \n "output": [\n {\n "argName": "outputHITSFile", \n "dataset": null, \n "subFiles": [\n {\n "file_guid": "52EC8BAA-5A04-C44B-84D5-143914CD28AA", \n "file_size": 1769797, \n "name": "Hits.hc_20198160.BOINC-TEST.45d50b2c-af4c-4871-969c-7fc97e46e739_34846.HITS.pool.root", \n "nentries": 2\n }\n ], \n "type": "HITS"\n }\n ]\n }, \n "name": "Sim_tf", \n "reportVersion": "2.0.7", \n "resource": {\n "dbDataTotal": 8549252, \n "dbTimeTotal": 58.3, \n "executor": {\n "EVNTtoHITS": {\n "cpuTime": 480, \n "dbData": 4274626, \n "dbTime": 29.15, \n "memory": {\n "Avg": {\n "avgPSS": 1170657, \n "avgRSS": 1177846, \n "avgSwap": 0, \n "avgVMEM": 1968613, \n "rateRBYTES": 2537982, \n "rateRCHAR": 946116, \n "rateWBYTES": 2033, \n "rateWCHAR": 6264\n }, \n "Max": {\n "maxPSS": 1481076, \n "maxRSS": 1484308, \n "maxSwap": 0, \n "maxVMEM": 2494204, \n "totRBYTES": 1446649856, \n "totRCHAR": 539286177, \n "totWBYTES": 1159168, \n "totWCHAR": 3571021\n }\n }, \n "nevents": 2, \n "postExe": {\n "cpuTime": 1, \n "wallTime": 1\n }, \n "preExe": {\n "cpuTime": 0, \n "wallTime": 1\n }, \n "total": {\n "cpuTime": 482, \n "wallTime": 577\n }, \n "validation": {\n "cpuTime": 0, \n "wallTime": 1\n }, \n "wallTime": 575\n }\n }, \n "machine": {\n "cpu_family": "6", \n "linux_distribution": [\n "CentOS Linux", \n "7.8.2003", \n "Core"\n ], \n "model": "60", \n "model_name": "Intel(R) Core(TM) i5-4440 CPU @ 3.10GHz", \n "node": "CentOS7", \n "platform": "Linux-3.10.0-1160.15.2.el7.x86_64-x86_64-with-centos-7.8.2003-Core"\n }, \n "transform": {\n "cpuEfficiency": 0.8288, \n "cpuPWEfficiency": 0.8288, \n "cpuTime": 4, \n "cpuTimeTotal": 482, \n "externalCpuTime": 2, \n "processedEvents": 2, \n "trfPredata": null, \n "wallTime": 584\n }\n }\n}', 'xml': '{"Hits.hc_20198160.BOINC-TEST.45d50b2c-af4c-4871-969c-7fc97e46e739_34846.HITS.pool.root": {"adler32": "e5baf080", "surl": "root://eosatlas.cern.ch:1094//eos/atlas/atlasdatadisk/rucio/hc_test/5d/cb/Hits.hc_20198160.BOINC-TEST.45d50b2c-af4c-4871-969c-7fc97e46e739_34846.HITS.pool.root", "guid": "52EC8BAA-5A04-C44B-84D5-143914CD28AA", "fsize": 1769797}, "45d50b2c-af4c-4871-969c-7fc97e46e739_34846.job.log.tgz": {"adler32": "61f5ef05", "surl": "root://eosatlas.cern.ch:1094//eos/atlas/atlasdatadisk/rucio/hc_test/9d/ea/45d50b2c-af4c-4871-969c-7fc97e46e739_34846.job.log.tgz", "guid": "a80826c2-35c4-46d9-835a-a7a9e93d73ee", "fsize": 160096}}', 'maxVMEM': 2916344, 'cpuConversionFactor': 1.0, 'avgSWAP': 0.0, 'state': 'finished', 'transExitCode': 0, 'pilotErrorDiag': '', 'node': 'CentOS7', 'avgRSS': 1191850.0, 'avgPSS': 1185153.0, 'timestamp': '2021-03-18T03:08:59+02:00', 'pilotTiming': '0|0|604|0|11', 'attemptNr': 0, 'totWBYTES': 2129920, 'nEvents': 2, 'rateRBYTES': 3040846.0, 'pilotLog': '', 'cpuConsumptionTime': 499, 'startTime': 1616029119.388578, 'cpuConsumptionUnit': 's+Intel(R) Core(TM) i5-4440 CPU @ 3.10GHz 6144 KB', 'exeErrorDiag': '', 'maxSWAP': 0, 'jobMetrics': 'actualCoreCount=4 nEvents=2 dbTime=29.15 dbData=4274626', 'maxRSS': 1585976, 'schedulerID': 'harvester-CERN_central_ACTA', 'endTime': 1616029739.098122, 'maxPSS': 1578708} [2021-03-18 03:09:19] 2021-03-18 01:08:59,098 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file /var/lib/BASE/BOINC00/slots/1/heartbeat.json [2021-03-18 03:09:19] 2021-03-18 01:08:59,098 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 5002531443 was dequeued from the monitored payloads queue [2021-03-18 03:09:19] 2021-03-18 01:08:59,218 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted [2021-03-18 03:09:19] 2021-03-18 01:08:59,234 | INFO | retrieve | pilot.control.job | make_job_report | [2021-03-18 03:09:19] 2021-03-18 01:08:59,234 | INFO | retrieve | pilot.control.job | make_job_report | job summary report [2021-03-18 03:09:19] 2021-03-18 01:08:59,234 | INFO | retrieve | pilot.control.job | make_job_report | -------------------------------------------------- [2021-03-18 03:09:19] 2021-03-18 01:08:59,234 | INFO | retrieve | pilot.control.job | make_job_report | PanDA job id: 5002531443 [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | task id: NULL [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | errors: (none) [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | pilot state: finished [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | transexitcode: 0 [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | exeerrorcode: 0 [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | exeerrordiag: [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | exitcode: 0 [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | exitmsg: OK [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | cpuconsumptiontime: 499 s [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | nevents: 2 [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | neventsw: 0 [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | pid: 1118 [2021-03-18 03:09:19] 2021-03-18 01:08:59,235 | INFO | retrieve | pilot.control.job | make_job_report | pgrp: 1118 [2021-03-18 03:09:19] 2021-03-18 01:08:59,236 | INFO | retrieve | pilot.control.job | make_job_report | corecount: 1 [2021-03-18 03:09:19] 2021-03-18 01:08:59,236 | INFO | retrieve | pilot.control.job | make_job_report | event service: False [2021-03-18 03:09:19] 2021-03-18 01:08:59,236 | INFO | retrieve | pilot.control.job | make_job_report | sizes: {0: 8515043, 1: 8515310, 2: 8515334, 615: 8548255, 616: 8547904, 617: 8557167, 618: 8558125} [2021-03-18 03:09:19] 2021-03-18 01:08:59,236 | INFO | retrieve | pilot.control.job | make_job_report | -------------------------------------------------- [2021-03-18 03:09:19] 2021-03-18 01:08:59,236 | INFO | retrieve | pilot.control.job | make_job_report | [2021-03-18 03:09:19] 2021-03-18 01:08:59,236 | DEBUG | retrieve | pilot.control.job | has_job_completed | ls -lF /var/lib/BASE/BOINC00/slots/1: [2021-03-18 03:09:19] [2021-03-18 03:09:19] 2021-03-18 01:08:59,236 | INFO | retrieve | pilot.util.container | execute | executing command: ls -lF /var/lib/BASE/BOINC00/slots/1 [2021-03-18 03:09:19] 2021-03-18 01:08:59,251 | DEBUG | retrieve | pilot.control.job | has_job_completed | total 44636 [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 176953 Mar 18 03:08 45d50b2c-af4c-4871-969c-7fc97e46e739_34846.job.log [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 160096 Mar 18 03:08 45d50b2c-af4c-4871-969c-7fc97e46e739_34846.job.log.tgz [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1174578 Mar 18 02:58 agis_schedconf.cvmfs.json [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 0 Mar 18 02:58 boinc_lockfile [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 8192 Mar 18 03:08 boinc_mmap_file [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 532 Mar 18 03:08 boinc_task_state.xml [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1948795 Mar 18 02:58 cric_ddmendpoints.json [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 38019645 Mar 18 02:58 EVNT.04972714._000023.pool.root.1 [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 6655 Mar 18 03:08 heartbeat.json [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1769797 Mar 18 03:08 Hits.hc_20198160.BOINC-TEST.45d50b2c-af4c-4871-969c-7fc97e46e739_34846.HITS.pool.root [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 6096 Mar 18 02:58 init_data.xml [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 1048543 Mar 18 02:58 input.tar.gz [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 112 Mar 18 02:58 job.xml [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1002 Mar 18 03:08 memory_monitor_summary.json [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 590 Mar 18 03:08 output.list [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 2662 Mar 18 02:58 pandaJob.out [2021-03-18 03:09:19] drwxrwx---. 2 boinc boinc 4096 Mar 18 03:08 PanDA_Pilot-5002531443/ [2021-03-18 03:09:19] drwx------. 5 boinc boinc 275 Mar 18 02:58 pilot2/ [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 1042975 Mar 18 02:34 pilot2.tar.gz [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 155446 Mar 18 03:08 pilotlog.txt [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 4974 Mar 18 02:55 queuedata.json [2021-03-18 03:09:19] -rwxr-xr-x. 1 boinc boinc 5573 Mar 18 02:58 run_atlas* [2021-03-18 03:09:19] -rwx------. 1 boinc boinc 20043 Mar 18 02:55 runpilot2-wrapper.sh* [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 407 Mar 18 02:58 runtime_log [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 5546 Mar 18 02:58 runtime_log.err [2021-03-18 03:09:19] drwxrwx--x. 2 boinc boinc 68 Mar 18 02:58 shared/ [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 16499 Mar 18 02:58 start_atlas.sh [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 1668 Mar 18 02:58 stderr.txt [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 130 Mar 18 02:58 TWIMDm77vgynfZGDcpSWOuwoABFKDmABFKDm2IFNDmCCFKDmxmKZPm.diag [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 107 Mar 18 02:58 wrapper_26015_x86_64-pc-linux-gnu [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 24 Mar 18 03:08 wrapper_checkpoint.txt [2021-03-18 03:09:19] 2021-03-18 01:08:59,251 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,251 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,251 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,251 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,251 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s) [2021-03-18 03:09:19] 2021-03-18 01:08:59,252 | INFO | retrieve | pilot.control.job | has_job_completed | job 5002531443 has completed (purged errors) [2021-03-18 03:09:19] 2021-03-18 01:08:59,253 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called [2021-03-18 03:09:19] 2021-03-18 01:08:59,254 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/BASE/BOINC00/slots/1/PanDA_Pilot-5002531443 [2021-03-18 03:09:19] 2021-03-18 01:09:00,259 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [1118] [2021-03-18 03:09:19] 2021-03-18 01:09:00,260 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 1118 [2021-03-18 03:09:19] 2021-03-18 01:09:00,260 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes [2021-03-18 03:09:19] 2021-03-18 01:09:01,260 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes [2021-03-18 03:09:19] 2021-03-18 01:09:01,261 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=1118 [2021-03-18 03:09:19] 2021-03-18 01:09:01,293 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [1118] (in reverse order) [2021-03-18 03:09:19] 2021-03-18 01:09:01,321 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) [2021-03-18 03:09:19] 2021-03-18 01:09:01,321 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs [2021-03-18 03:09:19] 2021-03-18 01:09:01,321 | DEBUG | retrieve | pilot.util.queuehandling | purge_queue | queue purged [2021-03-18 03:09:19] 2021-03-18 01:09:01,321 | INFO | retrieve | pilot.control.job | retrieve | ready for new job [2021-03-18 03:09:19] 2021-03-18 01:09:01,321 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging [2021-03-18 03:09:19] 2021-03-18 01:09:01,322 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 03:09:19] 2021-03-18 01:09:01,322 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.9.6 (20) *** [2021-03-18 03:09:19] 2021-03-18 01:09:01,322 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 03:09:19] 2021-03-18 01:09:01,322 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | [2021-03-18 03:09:19] 2021-03-18 01:09:01,322 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM [2021-03-18 03:09:19] 2021-03-18 01:09:01,322 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: [2021-03-18 03:09:19] 2021-03-18 01:09:01,379 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | [2021-03-18 03:09:19] LSB Version: :core-4.1-amd64:core-4.1-noarch [2021-03-18 03:09:19] Distributor ID: CentOS [2021-03-18 03:09:19] Description: CentOS Linux release 7.8.2003 (Core) [2021-03-18 03:09:19] Release: 7.8.2003 [2021-03-18 03:09:19] Codename: Core [2021-03-18 03:09:19] 2021-03-18 01:09:01,379 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 03:09:19] 2021-03-18 01:09:01,891 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/BASE/BOINC00/slots/1 [2021-03-18 03:09:19] 2021-03-18 01:09:01,903 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14332985344 B) [2021-03-18 03:09:19] 2021-03-18 01:09:01,903 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job [2021-03-18 03:09:19] 2021-03-18 01:09:01,904 | DEBUG | retrieve | pilot.control.job | retrieve | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:01,904 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:01,941 | WARNING | monitor | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set [2021-03-18 03:09:19] 2021-03-18 01:09:01,941 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended [2021-03-18 03:09:19] 2021-03-18 01:09:01,965 | DEBUG | failed_post | pilot.control.payload | failed_post | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:01,965 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:02,165 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set [2021-03-18 03:09:19] 2021-03-18 01:09:02,165 | DEBUG | data | pilot.control.data | control | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:02,165 | DEBUG | data | pilot.control.data | control | [data] control thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:02,166 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:02,166 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:02,278 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set [2021-03-18 03:09:19] 2021-03-18 01:09:02,278 | DEBUG | payload | pilot.control.payload | control | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:02,278 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:02,367 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set [2021-03-18 03:09:19] 2021-03-18 01:09:02,367 | DEBUG | job | pilot.control.job | control | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:02,367 | DEBUG | job | pilot.control.job | control | [job] control thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:02,403 | DEBUG | validate_pre | pilot.control.payload | validate_pre | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:02,403 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:02,673 | DEBUG | execute_payloads | pilot.control.payload | execute_payloads | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:02,673 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:02,748 | DEBUG | validate | pilot.control.job | validate | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:02,748 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:03,228 | DEBUG | validate_post | pilot.control.payload | validate_post | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:03,228 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:03,344 | DEBUG | copytool_in | pilot.control.data | copytool_in | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:03,344 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:03,384 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration [2021-03-18 03:09:19] 2021-03-18 01:09:04,242 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration [2021-03-18 03:09:19] 2021-03-18 01:09:04,242 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:04,242 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:04,394 | DEBUG | copytool_out | pilot.control.data | copytool_out | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:04,394 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:05,096 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration [2021-03-18 03:09:19] 2021-03-18 01:09:08,111 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | will not set job_aborted yet [2021-03-18 03:09:19] 2021-03-18 01:09:08,111 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:18,260 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s) [2021-03-18 03:09:19] 2021-03-18 01:09:18,261 | DEBUG | job_monitor | pilot.util.processes | threads_aborted | aborting since the last relevant thread is about to finish [2021-03-18 03:09:19] 2021-03-18 01:09:18,261 | DEBUG | job_monitor | pilot.control.job | job_monitor | will proceed to set job_aborted [2021-03-18 03:09:19] 2021-03-18 01:09:18,261 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished [2021-03-18 03:09:19] 2021-03-18 01:09:19,119 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) [2021-03-18 03:09:19] 2021-03-18 01:09:19,120 | INFO | MainThread | root | wrap_up | traces error code: 0 [2021-03-18 03:09:19] 2021-03-18 01:09:19,120 | INFO | MainThread | root | wrap_up | pilot has finished [2021-03-18 03:09:19] 2021-03-18 01:09:19,166 [wrapper] ==== pilot stdout END ==== [2021-03-18 03:09:19] 2021-03-18 01:09:19,169 [wrapper] ==== wrapper stdout RESUME ==== [2021-03-18 03:09:19] 2021-03-18 01:09:19,171 [wrapper] Pilot exit status: 0 [2021-03-18 03:09:19] 2021-03-18 01:09:19,209 [wrapper] pandaids: 5002531443 [2021-03-18 03:09:19] 2021-03-18 01:09:19,214 [wrapper] apfmon messages muted [2021-03-18 03:09:19] 2021-03-18 01:09:19,217 [wrapper] Test setup, not cleaning [2021-03-18 03:09:19] 2021-03-18 01:09:19,220 [wrapper] ==== wrapper stdout END ==== [2021-03-18 03:09:19] 2021-03-18 01:09:19,222 [wrapper] ==== wrapper stderr END ==== [2021-03-18 03:09:19] 2021-03-18 01:09:19,227 [wrapper] wrapperexiting ec=0, duration=651 [2021-03-18 03:09:19] 2021-03-18 01:09:19,230 [wrapper] apfmon messages muted [2021-03-18 03:09:19] *** Error codes and diagnostics *** [2021-03-18 03:09:19] "exeErrorCode": 0, [2021-03-18 03:09:19] "exeErrorDiag": "", [2021-03-18 03:09:19] "pilotErrorCode": 0, [2021-03-18 03:09:19] "pilotErrorDiag": "", [2021-03-18 03:09:19] *** Listing of results directory *** [2021-03-18 03:09:19] total 44852 [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 1042975 Mar 18 02:34 pilot2.tar.gz [2021-03-18 03:09:19] -rwx------. 1 boinc boinc 20043 Mar 18 02:55 runpilot2-wrapper.sh [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 4974 Mar 18 02:55 queuedata.json [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 107 Mar 18 02:58 wrapper_26015_x86_64-pc-linux-gnu [2021-03-18 03:09:19] -rwxr-xr-x. 1 boinc boinc 5573 Mar 18 02:58 run_atlas [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 112 Mar 18 02:58 job.xml [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 6096 Mar 18 02:58 init_data.xml [2021-03-18 03:09:19] drwxrwx--x. 2 boinc boinc 68 Mar 18 02:58 shared [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 0 Mar 18 02:58 boinc_lockfile [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 38019645 Mar 18 02:58 EVNT.04972714._000023.pool.root.1 [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 16499 Mar 18 02:58 start_atlas.sh [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 1048543 Mar 18 02:58 input.tar.gz [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 2662 Mar 18 02:58 pandaJob.out [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1174578 Mar 18 02:58 agis_schedconf.cvmfs.json [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1948795 Mar 18 02:58 cric_ddmendpoints.json [2021-03-18 03:09:19] drwx------. 5 boinc boinc 275 Mar 18 02:58 pilot2 [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1769797 Mar 18 03:08 Hits.hc_20198160.BOINC-TEST.45d50b2c-af4c-4871-969c-7fc97e46e739_34846.HITS.pool.root [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 532 Mar 18 03:08 boinc_task_state.xml [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1002 Mar 18 03:08 memory_monitor_summary.json [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 160096 Mar 18 03:08 45d50b2c-af4c-4871-969c-7fc97e46e739_34846.job.log.tgz [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 6655 Mar 18 03:08 heartbeat.json [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 24 Mar 18 03:09 wrapper_checkpoint.txt [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 8192 Mar 18 03:09 boinc_mmap_file [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 8830 Mar 18 03:09 pilotlog.txt [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 193862 Mar 18 03:09 45d50b2c-af4c-4871-969c-7fc97e46e739_34846.job.log [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 521 Mar 18 03:09 output.list [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 566 Mar 18 03:09 TWIMDm77vgynfZGDcpSWOuwoABFKDmABFKDm2IFNDmCCFKDmxmKZPm.diag [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 9116 Mar 18 03:09 runtime_log.err [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 680 Mar 18 03:09 runtime_log [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 368640 Mar 18 03:09 result.tar.gz [2021-03-18 03:09:19] -rw-rw-r--. 1 boinc boinc 39540 Mar 18 03:09 stderr.txt [2021-03-18 03:09:19] HITS file was successfully produced: [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1769797 Mar 18 03:08 shared/HITS.pool.root.1 [2021-03-18 03:09:19] *** Contents of shared directory: *** [2021-03-18 03:09:19] total 40268 [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 38019645 Mar 18 02:58 ATLAS.root_0 [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 16499 Mar 18 02:58 start_atlas.sh [2021-03-18 03:09:19] -rw-r--r--. 1 boinc boinc 1048543 Mar 18 02:58 input.tar.gz [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 1769797 Mar 18 03:08 HITS.pool.root.1 [2021-03-18 03:09:19] -rw-------. 1 boinc boinc 368640 Mar 18 03:09 result.tar.gz 03:09:20 (26470): run_atlas exited; CPU time 494.628162 03:09:20 (26470): called boinc_finish(0) </stderr_txt> ]]>
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