Name | HJsKDmq32gynfZGDcpSWOuwoABFKDmABFKDm2IFNDmpCFKDmxhG7Cn_0 |
Workunit | 2063717 |
Created | 18 Mar 2021, 8:20:00 UTC |
Sent | 18 Mar 2021, 8:22:38 UTC |
Report deadline | 25 Mar 2021, 8:22:38 UTC |
Received | 18 Mar 2021, 8:50:57 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4389 |
Run time | 10 min 54 sec |
CPU time | 6 min 28 sec |
Validate state | Valid |
Credit | 0.95 |
Device peak FLOPS | 3.56 GFLOPS |
Application version | ATLAS long simulation v1.00 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.42 GB |
Peak swap size | 2.23 GB |
Peak disk usage | 86.51 MB |
<core_client_version>7.16.11</core_client_version> <![CDATA[ <stderr_txt> 10:39:56 (10943): wrapper (7.7.26015): starting 10:39:56 (10943): wrapper: running run_atlas (--nthreads 1) [2021-03-18 10:39:56] Arguments: --nthreads 1 [2021-03-18 10:39:56] Threads: 1 [2021-03-18 10:39:56] Checking for CVMFS [2021-03-18 10:39:56] Probing /cvmfs/atlas.cern.ch... OK [2021-03-18 10:39:56] Probing /cvmfs/atlas-condb.cern.ch... OK [2021-03-18 10:39:57] Probing /cvmfs/grid.cern.ch... OK [2021-03-18 10:39:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2021-03-18 10:39:58] 2.8.0.0 15600 54 61060 81004 2 110 3967666 4096000 0 130560 0 76729 99.9961 1160 354 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1 [2021-03-18 10:39:58] CVMFS is ok [2021-03-18 10:39:58] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img [2021-03-18 10:39:58] Checking for singularity binary... [2021-03-18 10:39:58] Using singularity found in PATH at /usr/bin/singularity [2021-03-18 10:39:58] Running /usr/bin/singularity --version [2021-03-18 10:39:58] singularity version 3.7.1-1.el7 [2021-03-18 10:39:58] Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname [2021-03-18 10:39:58] CentOS7 [2021-03-18 10:39:58] Singularity works [2021-03-18 10:39:58] Starting ATLAS job with PandaID=5002817004 [2021-03-18 10:39:58] Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/1 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh [2021-03-18 10:50:46] *** The last 200 lines of the pilot log: *** [2021-03-18 10:50:46] "cpuTimeTotal": 375, [2021-03-18 10:50:46] "externalCpuTime": 1, [2021-03-18 10:50:46] "processedEvents": 2, [2021-03-18 10:50:46] "trfPredata": null, [2021-03-18 10:50:46] "wallTime": 489 [2021-03-18 10:50:46] } [2021-03-18 10:50:46] } [2021-03-18 10:50:46] } [2021-03-18 10:50:46] 2021-03-18 08:49:48,027 | DEBUG | queue_monitor | pilot.user.atlas.common | update_server | no need to update logstash for this job [2021-03-18 10:50:46] 2021-03-18 08:49:48,027 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished [2021-03-18 10:50:46] 2021-03-18 08:49:48,027 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running [2021-03-18 10:50:46] 2021-03-18 08:49:48,027 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | INFO | queue_monitor | pilot.control.job | send_state | pilot will not update the server (heartbeat message will be written to file) [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | INFO | queue_monitor | pilot.control.job | send_state | job 5002817004 has finished - writing final server update [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | DEBUG | queue_monitor | pilot.control.job | get_data_structure | building data structure to be sent to server with heartbeat [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | job definition core count: 1 [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | INFO | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | will not add max space = -35818603 B to job metrics [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | WARNING | queue_monitor | pilot.api.analytics | get_fitted_data | wrong length of table data, x=[1616057147.0, 1616057208.0], y=[1564188.0, 1569392.0] (must be same and length>=4) [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics | job metrics="actualCoreCount=1 nEvents=2 dbTime=27.76 dbData=4274626" [2021-03-18 10:50:46] 2021-03-18 08:49:48,028 | INFO | queue_monitor | pilot.control.job | get_data_structure | mean actualcorecount: 2.375000 [2021-03-18 10:50:46] 2021-03-18 08:49:48,029 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 2 (read) [2021-03-18 10:50:46] 2021-03-18 08:49:48,029 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc/slots/1/PanDA_Pilot-5002817004/memory_monitor_summary.json (trf name=prmon) [2021-03-18 10:50:46] 2021-03-18 08:49:48,030 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 10367, 'nprocs': 7, 'nthreads': 8, 'rx_bytes': 8838765, 'wtime': 493, 'rss': 1587024, 'write_bytes': 1687552, 'vmem': 2932740, 'read_bytes': 1609564160, 'stime': 11, 'tx_bytes': 3629748, 'pss': 1579764, 'wchar': 5002949, 'rchar': 569414186, 'tx_packets': 7143, 'swap': 0, 'utime': 359}, 'Avg': {'write_bytes': 3422.0, 'nprocs': 5.0, 'nthreads': 5.888, 'rx_bytes': 17928.0, 'rx_packets': 21.027, 'vmem': 2425469.0, 'read_bytes': 3264769.0, 'swap': 0.0, 'tx_bytes': 7362.0, 'pss': 1143750.0, 'wchar': 10147.0, 'rchar': 1154974.0, 'tx_packets': 14.488, 'rss': 1158944.0}, 'HW': {'mem': {'MemTotal': 4654084}, 'cpu': {'CoresPerSocket': 4, 'ModelName': 'Intel(R) Core(TM) i5-4440 CPU @ 3.10GHz', 'ThreadsPerCore': 1, 'CPUs': 4, 'Sockets': 1}}, 'prmon': {'Version': '2.2.0'}} [2021-03-18 10:50:46] 2021-03-18 08:49:48,030 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json [2021-03-18 10:50:46] 2021-03-18 08:49:48,030 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json [2021-03-18 10:50:46] 2021-03-18 08:49:48,030 | INFO | queue_monitor | pilot.util.timing | timing_report | .............................. [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . Timing measurements: [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . get job = 0 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . initial setup = 0 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload setup = 17 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . total setup = 17 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-in = 1 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload execution = 543 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-out = 0 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | INFO | queue_monitor | pilot.util.timing | timing_report | .............................. [2021-03-18 10:50:46] 2021-03-18 08:49:48,031 | DEBUG | queue_monitor | pilot.control.job | send_state | is_harvester_mode(args) : False [2021-03-18 10:50:46] 2021-03-18 08:49:48,032 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'pilotErrorCode': 0, 'rateWBYTES': 3422.0, 'pilotID': 'http://aipanda404.cern.ch/data/jobs/2021-03-18/BOINC-TEST/5002817004.out|ALRB|2.9.6 (20)', 'meanCoreCount': 2.375, 'totRBYTES': 1609564160, 'siteName': 'BOINC-TEST', 'avgVMEM': 2425469.0, 'coreCount': 1, 'totWCHAR': 5002949, 'rateRCHAR': 1154974.0, 'jobId': '5002817004', 'totRCHAR': 569414186, 'exeErrorCode': 0, 'rateWCHAR': 10147.0, 'metaData': '{\n "cmdLine": "\'/cvmfs/atlas.cern.ch/repo/sw/software/21.0/AtlasOffline/21.0.16/InstallArea/x86_64-slc6-gcc49-opt/share/Sim_tf.py\' \'--maxEvents=2\' \'--skipEvents=0\' \'--firstEvent=118001\' \'--randomSeed=119\' \'--DBRelease=all:current\' \'--geometryVersion=default:ATLAS-R2-2016-01-00-01_VALIDATION\' \'--conditionsTag\' \'default:OFLCOND-MC16-SDR-14\' \'--physicsList=FTFP_BERT_ATL_VALIDATION\' \'--preExec\' \'EVNTtoHITS:simFlags.SimBarcodeOffset.set_Value_and_Lock(200000)\' \'EVNTtoHITS:simFlags.TRTRangeCut=30.0;simFlags.TightMuonStepping=True\' \'--postInclude\' \'default:RecJobTransforms/UseFrontier.py\' \'--simulator=FullG4\' \'--truthStrategy=MC15aPlus\' \'--DataRunNumber=361106\' \'--outputHitsFile\' \'output.1.ed67554a-4127-435e-89f8-72059460b879_12060.pool.root\' \'--inputEvgenFile\' \'EVNT.04972714._000033.pool.root.1\'", \n "created": "2021-03-18T10:49:11", \n "executor": [\n {\n "asetup": null, \n "errMsg": "", \n "exeConfig": {\n "inputs": [\n "EVNT"\n ], \n "outputs": [\n "HITS"\n ], \n "script": "athena.py", \n "substep": "sim"\n }, \n "logfileReport": {\n "countSummary": {\n "CATASTROPHE": 0, \n "CRITICAL": 0, \n "DEBUG": 0, \n "ERROR": 0, \n "FATAL": 0, \n "IGNORED": 0, \n "INFO": 2772, \n "UNKNOWN": 6334, \n "VERBOSE": 0, \n "WARNING": 31\n }, \n "details": {}\n }, \n "metaData": {}, \n "name": "EVNTtoHITS", \n "rc": 0, \n "statusOK": true, \n "validation": true\n }\n ], \n "exitAcronym": "OK", \n "exitCode": 0, \n "exitMsg": "OK", \n "exitMsgExtra": "", \n "files": {\n "input": [\n {\n "dataset": null, \n "nentries": 1000, \n "subFiles": [\n {\n "file_guid": "EBBCC704-B51F-ED43-9111-2038BDA71C28", \n "name": "EVNT.04972714._000033.pool.root.1"\n }\n ], \n "type": "EVNT"\n }\n ], \n "output": [\n {\n "argName": "outputHITSFile", \n "dataset": null, \n "subFiles": [\n {\n "file_guid": "4D31023B-CE24-564C-AF60-9497215A5B43", \n "file_size": 1251566, \n "name": "output.1.ed67554a-4127-435e-89f8-72059460b879_12060.pool.root", \n "nentries": 2\n }\n ], \n "type": "HITS"\n }\n ]\n }, \n "name": "Sim_tf", \n "reportVersion": "2.0.7", \n "resource": {\n "dbDataTotal": 8549252, \n "dbTimeTotal": 55.52, \n "executor": {\n "EVNTtoHITS": {\n "cpuTime": 374, \n "dbData": 4274626, \n "dbTime": 27.76, \n "memory": {\n "Avg": {\n "avgPSS": 1131296, \n "avgRSS": 1139271, \n "avgSwap": 0, \n "avgVMEM": 1899502, \n "rateRBYTES": 2864281, \n "rateRCHAR": 1118541, \n "rateWBYTES": 1510, \n "rateWCHAR": 6513\n }, \n "Max": {\n "maxPSS": 1482594, \n "maxRSS": 1485820, \n "maxSwap": 0, \n "maxVMEM": 2325232, \n "totRBYTES": 1374855168, \n "totRCHAR": 536899841, \n "totWBYTES": 724992, \n "totWCHAR": 3126773\n }\n }, \n "nevents": 2, \n "postExe": {\n "cpuTime": 1, \n "wallTime": 1\n }, \n "preExe": {\n "cpuTime": 0, \n "wallTime": 1\n }, \n "total": {\n "cpuTime": 375, \n "wallTime": 473\n }, \n "validation": {\n "cpuTime": 0, \n "wallTime": 1\n }, \n "wallTime": 470\n }\n }, \n "machine": {\n "cpu_family": "6", \n "linux_distribution": [\n "CentOS Linux", \n "7.8.2003", \n "Core"\n ], \n "model": "60", \n "model_name": "Intel(R) Core(TM) i5-4440 CPU @ 3.10GHz", \n "node": "CentOS7", \n "platform": "Linux-3.10.0-1160.15.2.el7.x86_64-x86_64-with-centos-7.8.2003-Core"\n }, \n "transform": {\n "cpuEfficiency": 0.773, \n "cpuPWEfficiency": 0.773, \n "cpuTime": 4, \n "cpuTimeTotal": 375, \n "externalCpuTime": 1, \n "processedEvents": 2, \n "trfPredata": null, \n "wallTime": 489\n }\n }\n}', 'xml': '{"output.1.ed67554a-4127-435e-89f8-72059460b879_12060.pool.root": {"adler32": "8b463a5e", "surl": "root://eosatlas.cern.ch:1094//eos/atlas/atlasdatadisk/rucio/hc_test/dc/51/output.1.ed67554a-4127-435e-89f8-72059460b879_12060.pool.root", "guid": "4D31023B-CE24-564C-AF60-9497215A5B43", "fsize": 1251566}, "ed67554a-4127-435e-89f8-72059460b879_12060.1.job.log.tgz": {"adler32": "9093d07b", "surl": "root://eosatlas.cern.ch:1094//eos/atlas/atlasdatadisk/rucio/hc_test/1b/c2/ed67554a-4127-435e-89f8-72059460b879_12060.1.job.log.tgz", "guid": "d8a39bd2-7d31-49f2-bbf1-7bf84c3bd3c2", "fsize": 159001}}', 'maxVMEM': 2932740, 'cpuConversionFactor': 1.0, 'avgSWAP': 0.0, 'state': 'finished', 'transExitCode': 0, 'pilotErrorDiag': '', 'node': 'CentOS7', 'avgRSS': 1158944.0, 'avgPSS': 1143750.0, 'timestamp': '2021-03-18T10:49:48+02:00', 'pilotTiming': '0|1|543|0|17', 'attemptNr': 0, 'totWBYTES': 1687552, 'nEvents': 2, 'rateRBYTES': 3264769.0, 'pilotLog': '', 'cpuConsumptionTime': 392, 'startTime': 1616056807.198571, 'cpuConsumptionUnit': 's+Intel(R) Core(TM) i5-4440 CPU @ 3.10GHz 6144 KB', 'exeErrorDiag': '', 'maxSWAP': 0, 'jobMetrics': 'actualCoreCount=1 nEvents=2 dbTime=27.76 dbData=4274626', 'maxRSS': 1587024, 'schedulerID': 'harvester-CERN_central_ACTA', 'endTime': 1616057388.031527, 'maxPSS': 1579764} [2021-03-18 10:50:46] 2021-03-18 08:49:48,032 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file /var/lib/boinc/slots/1/heartbeat.json [2021-03-18 10:50:46] 2021-03-18 08:49:48,032 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 5002817004 was dequeued from the monitored payloads queue [2021-03-18 10:50:46] 2021-03-18 08:49:48,157 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted [2021-03-18 10:50:46] 2021-03-18 08:49:48,196 | INFO | retrieve | pilot.control.job | make_job_report | [2021-03-18 10:50:46] 2021-03-18 08:49:48,196 | INFO | retrieve | pilot.control.job | make_job_report | job summary report [2021-03-18 10:50:46] 2021-03-18 08:49:48,196 | INFO | retrieve | pilot.control.job | make_job_report | -------------------------------------------------- [2021-03-18 10:50:46] 2021-03-18 08:49:48,196 | INFO | retrieve | pilot.control.job | make_job_report | PanDA job id: 5002817004 [2021-03-18 10:50:46] 2021-03-18 08:49:48,196 | INFO | retrieve | pilot.control.job | make_job_report | task id: NULL [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | errors: (none) [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | pilot state: finished [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | transexitcode: 0 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | exeerrorcode: 0 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | exeerrordiag: [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | exitcode: 0 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | exitmsg: OK [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | cpuconsumptiontime: 392 s [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | nevents: 2 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | neventsw: 0 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | pid: 17636 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | pgrp: 17636 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | corecount: 1 [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | event service: False [2021-03-18 10:50:46] 2021-03-18 08:49:48,197 | INFO | retrieve | pilot.control.job | make_job_report | sizes: {0: 8497223, 1: 8497247, 2: 8497316, 3: 8497470, 12: 8497494, 565: 8530659, 567: 8539750, 568: 8539798, 569: 8539940} [2021-03-18 10:50:46] 2021-03-18 08:49:48,198 | INFO | retrieve | pilot.control.job | make_job_report | -------------------------------------------------- [2021-03-18 10:50:46] 2021-03-18 08:49:48,198 | INFO | retrieve | pilot.control.job | make_job_report | [2021-03-18 10:50:46] 2021-03-18 08:49:48,198 | DEBUG | retrieve | pilot.control.job | has_job_completed | ls -lF /var/lib/boinc/slots/1: [2021-03-18 10:50:46] [2021-03-18 10:50:46] 2021-03-18 08:49:48,198 | INFO | retrieve | pilot.util.container | execute | executing command: ls -lF /var/lib/boinc/slots/1 [2021-03-18 10:50:46] 2021-03-18 08:49:48,213 | DEBUG | retrieve | pilot.control.job | has_job_completed | total 43556 [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1174577 Mar 18 10:40 agis_schedconf.cvmfs.json [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 0 Mar 18 10:39 boinc_lockfile [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 8192 Mar 18 10:49 boinc_mmap_file [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 532 Mar 18 10:49 boinc_task_state.xml [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1943413 Mar 18 10:40 cric_ddmendpoints.json [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 171160 Mar 18 10:49 ed67554a-4127-435e-89f8-72059460b879_12060.1.job.log [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 159001 Mar 18 10:49 ed67554a-4127-435e-89f8-72059460b879_12060.1.job.log.tgz [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 37438704 Mar 18 10:39 EVNT.04972714._000033.pool.root.1 [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 6565 Mar 18 10:49 heartbeat.json [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 130 Mar 18 10:39 HJsKDmq32gynfZGDcpSWOuwoABFKDmABFKDm2IFNDmpCFKDmxhG7Cn.diag [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 6082 Mar 18 10:39 init_data.xml [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 1048521 Mar 18 10:39 input.tar.gz [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 112 Mar 18 10:39 job.xml [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1003 Mar 18 10:49 memory_monitor_summary.json [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1251566 Mar 18 10:49 output.1.ed67554a-4127-435e-89f8-72059460b879_12060.pool.root [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 546 Mar 18 10:49 output.list [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 2619 Mar 18 10:39 pandaJob.out [2021-03-18 10:50:46] drwxrwx---. 2 boinc boinc 4096 Mar 18 10:49 PanDA_Pilot-5002817004/ [2021-03-18 10:50:46] drwx------. 5 boinc boinc 4096 Mar 18 10:40 pilot2/ [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 1042975 Mar 18 09:24 pilot2.tar.gz [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 153155 Mar 18 10:49 pilotlog.txt [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 4974 Mar 18 10:19 queuedata.json [2021-03-18 10:50:46] -rwxr-xr-x. 1 boinc boinc 5573 Mar 18 10:39 run_atlas* [2021-03-18 10:50:46] -rwx------. 1 boinc boinc 20039 Mar 18 10:19 runpilot2-wrapper.sh* [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 407 Mar 18 10:39 runtime_log [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 5464 Mar 18 10:39 runtime_log.err [2021-03-18 10:50:46] drwxrwx--x. 2 boinc boinc 68 Mar 18 10:39 shared/ [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 16539 Mar 18 10:39 start_atlas.sh [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 1677 Mar 18 10:39 stderr.txt [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 107 Mar 18 10:39 wrapper_26015_x86_64-pc-linux-gnu [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 24 Mar 18 10:49 wrapper_checkpoint.txt [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,214 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.control.job | has_job_completed | job 5002817004 has completed (purged errors) [2021-03-18 10:50:46] 2021-03-18 08:49:48,215 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called [2021-03-18 10:50:46] 2021-03-18 08:49:48,216 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/1/PanDA_Pilot-5002817004 [2021-03-18 10:50:46] 2021-03-18 08:49:49,220 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [17636] [2021-03-18 10:50:46] 2021-03-18 08:49:49,220 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 17636 [2021-03-18 10:50:46] 2021-03-18 08:49:49,220 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes [2021-03-18 10:50:46] 2021-03-18 08:49:50,230 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes [2021-03-18 10:50:46] 2021-03-18 08:49:50,230 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=17636 [2021-03-18 10:50:46] 2021-03-18 08:49:50,260 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [17636] (in reverse order) [2021-03-18 10:50:46] 2021-03-18 08:49:50,287 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) [2021-03-18 10:50:46] 2021-03-18 08:49:50,287 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs [2021-03-18 10:50:46] 2021-03-18 08:49:50,287 | DEBUG | retrieve | pilot.util.queuehandling | purge_queue | queue purged [2021-03-18 10:50:46] 2021-03-18 08:49:50,287 | INFO | retrieve | pilot.control.job | retrieve | ready for new job [2021-03-18 10:50:46] 2021-03-18 08:49:50,288 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging [2021-03-18 10:50:46] 2021-03-18 08:49:50,288 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 10:50:46] 2021-03-18 08:49:50,288 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.9.6 (20) *** [2021-03-18 10:50:46] 2021-03-18 08:49:50,288 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 10:50:46] 2021-03-18 08:49:50,288 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | [2021-03-18 10:50:46] 2021-03-18 08:49:50,288 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM [2021-03-18 10:50:46] 2021-03-18 08:49:50,288 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: [2021-03-18 10:50:46] 2021-03-18 08:49:50,343 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | [2021-03-18 10:50:46] LSB Version: :core-4.1-amd64:core-4.1-noarch [2021-03-18 10:50:46] Distributor ID: CentOS [2021-03-18 10:50:46] Description: CentOS Linux release 7.8.2003 (Core) [2021-03-18 10:50:46] Release: 7.8.2003 [2021-03-18 10:50:46] Codename: Core [2021-03-18 10:50:46] 2021-03-18 08:49:50,343 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 10:50:46] 2021-03-18 08:49:50,851 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/1 [2021-03-18 10:50:46] 2021-03-18 08:49:50,863 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (13897826304 B) [2021-03-18 10:50:46] 2021-03-18 08:49:50,863 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job [2021-03-18 10:50:46] 2021-03-18 08:49:50,864 | DEBUG | retrieve | pilot.control.job | retrieve | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:50,864 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:50,892 | WARNING | monitor | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set [2021-03-18 10:50:46] 2021-03-18 08:49:50,892 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended [2021-03-18 10:50:46] 2021-03-18 08:49:50,913 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:50,913 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:51,100 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set [2021-03-18 10:50:46] 2021-03-18 08:49:51,101 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set [2021-03-18 10:50:46] 2021-03-18 08:49:51,101 | DEBUG | payload | pilot.control.payload | control | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:51,101 | DEBUG | data | pilot.control.data | control | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:51,101 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:51,102 | DEBUG | data | pilot.control.data | control | [data] control thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:51,193 | DEBUG | copytool_in | pilot.control.data | copytool_in | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:51,194 | DEBUG | validate | pilot.control.job | validate | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:51,194 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:51,194 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:51,366 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set [2021-03-18 10:50:46] 2021-03-18 08:49:51,367 | DEBUG | job | pilot.control.job | control | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:51,367 | DEBUG | job | pilot.control.job | control | [job] control thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:51,469 | DEBUG | execute_payloads | pilot.control.payload | execute_payloads | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:51,469 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:52,112 | DEBUG | validate_pre | pilot.control.payload | validate_pre | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:52,112 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:52,131 | DEBUG | failed_post | pilot.control.payload | failed_post | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:52,132 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:52,136 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration [2021-03-18 10:50:46] 2021-03-18 08:49:52,241 | DEBUG | validate_post | pilot.control.payload | validate_post | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:52,241 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:53,137 | DEBUG | copytool_out | pilot.control.data | copytool_out | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:53,137 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:53,179 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration [2021-03-18 10:50:46] 2021-03-18 08:49:53,179 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:53,179 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished [2021-03-18 10:50:46] 2021-03-18 08:49:53,643 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration [2021-03-18 10:50:46] 2021-03-18 08:49:56,707 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | will not set job_aborted yet [2021-03-18 10:50:46] 2021-03-18 08:49:56,707 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished [2021-03-18 10:50:46] 2021-03-18 08:50:46,361 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s) [2021-03-18 10:50:46] 2021-03-18 08:50:46,361 | DEBUG | job_monitor | pilot.util.processes | threads_aborted | aborting since the last relevant thread is about to finish [2021-03-18 10:50:46] 2021-03-18 08:50:46,361 | DEBUG | job_monitor | pilot.control.job | job_monitor | will proceed to set job_aborted [2021-03-18 10:50:46] 2021-03-18 08:50:46,361 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished [2021-03-18 10:50:46] 2021-03-18 08:50:46,441 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) [2021-03-18 10:50:46] 2021-03-18 08:50:46,441 | INFO | MainThread | root | wrap_up | traces error code: 0 [2021-03-18 10:50:46] 2021-03-18 08:50:46,441 | INFO | MainThread | root | wrap_up | pilot has finished [2021-03-18 10:50:46] 2021-03-18 08:50:46,492 [wrapper] ==== pilot stdout END ==== [2021-03-18 10:50:46] 2021-03-18 08:50:46,495 [wrapper] ==== wrapper stdout RESUME ==== [2021-03-18 10:50:46] 2021-03-18 08:50:46,498 [wrapper] Pilot exit status: 0 [2021-03-18 10:50:46] 2021-03-18 08:50:46,510 [wrapper] pandaids: 5002817004 [2021-03-18 10:50:46] 2021-03-18 08:50:46,515 [wrapper] apfmon messages muted [2021-03-18 10:50:46] 2021-03-18 08:50:46,518 [wrapper] Test setup, not cleaning [2021-03-18 10:50:46] 2021-03-18 08:50:46,521 [wrapper] ==== wrapper stdout END ==== [2021-03-18 10:50:46] 2021-03-18 08:50:46,523 [wrapper] ==== wrapper stderr END ==== [2021-03-18 10:50:46] 2021-03-18 08:50:46,528 [wrapper] wrapperexiting ec=0, duration=647 [2021-03-18 10:50:46] 2021-03-18 08:50:46,531 [wrapper] apfmon messages muted [2021-03-18 10:50:46] *** Error codes and diagnostics *** [2021-03-18 10:50:46] "exeErrorCode": 0, [2021-03-18 10:50:46] "exeErrorDiag": "", [2021-03-18 10:50:46] "pilotErrorCode": 0, [2021-03-18 10:50:46] "pilotErrorDiag": "", [2021-03-18 10:50:46] *** Listing of results directory *** [2021-03-18 10:50:46] total 44984 [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 1042975 Mar 18 09:24 pilot2.tar.gz [2021-03-18 10:50:46] -rwx------. 1 boinc boinc 20039 Mar 18 10:19 runpilot2-wrapper.sh [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 4974 Mar 18 10:19 queuedata.json [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 107 Mar 18 10:39 wrapper_26015_x86_64-pc-linux-gnu [2021-03-18 10:50:46] -rwxr-xr-x. 1 boinc boinc 5573 Mar 18 10:39 run_atlas [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 112 Mar 18 10:39 job.xml [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 6082 Mar 18 10:39 init_data.xml [2021-03-18 10:50:46] drwxrwx--x. 2 boinc boinc 68 Mar 18 10:39 shared [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 0 Mar 18 10:39 boinc_lockfile [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 16539 Mar 18 10:39 start_atlas.sh [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 1048521 Mar 18 10:39 input.tar.gz [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 37438704 Mar 18 10:39 EVNT.04972714._000033.pool.root.1 [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 2619 Mar 18 10:39 pandaJob.out [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1174577 Mar 18 10:40 agis_schedconf.cvmfs.json [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1943413 Mar 18 10:40 cric_ddmendpoints.json [2021-03-18 10:50:46] drwx------. 5 boinc boinc 4096 Mar 18 10:40 pilot2 [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1251566 Mar 18 10:49 output.1.ed67554a-4127-435e-89f8-72059460b879_12060.pool.root [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 532 Mar 18 10:49 boinc_task_state.xml [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1003 Mar 18 10:49 memory_monitor_summary.json [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 159001 Mar 18 10:49 ed67554a-4127-435e-89f8-72059460b879_12060.1.job.log.tgz [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 6565 Mar 18 10:49 heartbeat.json [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 8192 Mar 18 10:50 boinc_mmap_file [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 24 Mar 18 10:50 wrapper_checkpoint.txt [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 8823 Mar 18 10:50 pilotlog.txt [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 188039 Mar 18 10:50 ed67554a-4127-435e-89f8-72059460b879_12060.1.job.log [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 546 Mar 18 10:50 output.list [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 748 Mar 18 10:50 runtime_log [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1617920 Mar 18 10:50 result.tar.gz [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 9348 Mar 18 10:50 runtime_log.err [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 565 Mar 18 10:50 HJsKDmq32gynfZGDcpSWOuwoABFKDmABFKDm2IFNDmpCFKDmxhG7Cn.diag [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 39404 Mar 18 10:50 stderr.txt [2021-03-18 10:50:46] HITS file was successfully produced: [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1251566 Mar 18 10:49 shared/HITS.pool.root.1 [2021-03-18 10:50:46] *** Contents of shared directory: *** [2021-03-18 10:50:46] total 40412 [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 37438704 Mar 18 10:39 ATLAS.root_0 [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 16539 Mar 18 10:39 start_atlas.sh [2021-03-18 10:50:46] -rw-r--r--. 1 boinc boinc 1048521 Mar 18 10:39 input.tar.gz [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1251566 Mar 18 10:49 HITS.pool.root.1 [2021-03-18 10:50:46] -rw-------. 1 boinc boinc 1617920 Mar 18 10:50 result.tar.gz 10:50:47 (10943): run_atlas exited; CPU time 388.991123 10:50:47 (10943): called boinc_finish(0) </stderr_txt> ]]>
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