Name | K1VNDmXK3gynfZGDcpSWOuwoABFKDmABFKDm2IFNDmtCFKDmxVdOwn_0 |
Workunit | 2063721 |
Created | 18 Mar 2021, 8:37:04 UTC |
Sent | 18 Mar 2021, 8:47:02 UTC |
Report deadline | 25 Mar 2021, 8:47:02 UTC |
Received | 18 Mar 2021, 9:13:22 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4354 |
Run time | 17 min 51 sec |
CPU time | 10 min 18 sec |
Validate state | Valid |
Credit | 79.63 |
Device peak FLOPS | 32.10 GFLOPS |
Application version | ATLAS long simulation v1.01 (long_native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.49 GB |
Peak swap size | 2.12 GB |
Peak disk usage | 37.29 MB |
<core_client_version>7.16.11</core_client_version> <![CDATA[ <stderr_txt> 09:55:17 (2892662): wrapper (7.7.26015): starting 09:55:17 (2892662): wrapper: running run_atlas (--nthreads 7) [2021-03-18 09:55:17] Arguments: --nthreads 7 [2021-03-18 09:55:17] Threads: 7 [2021-03-18 09:55:17] Checking for CVMFS [2021-03-18 09:55:17] Probing /cvmfs/atlas.cern.ch... OK [2021-03-18 09:55:17] Probing /cvmfs/atlas-condb.cern.ch... OK [2021-03-18 09:55:18] Probing /cvmfs/grid.cern.ch... OK [2021-03-18 09:55:18] Probing /cvmfs/cernvm-prod.cern.ch... OK [2021-03-18 09:55:18] Probing /cvmfs/sft.cern.ch... OK [2021-03-18 09:55:18] Probing /cvmfs/alice.cern.ch... OK [2021-03-18 09:55:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2021-03-18 09:55:18] 2.8.0.0 3554 13839 63896 81004 2 56 3512935 3670016 2187 130560 0 891883 99.3796 525926 11 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1 [2021-03-18 09:55:18] CVMFS is ok [2021-03-18 09:55:18] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img [2021-03-18 09:55:18] Checking for singularity binary... [2021-03-18 09:55:18] Using singularity found in PATH at /usr/bin/singularity [2021-03-18 09:55:18] Running /usr/bin/singularity --version [2021-03-18 09:55:18] singularity version 3.7.1-1.el8 [2021-03-18 09:55:18] Checking singularity works with /usr/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname [2021-03-18 09:55:19] RYZEN9COS8 [2021-03-18 09:55:19] Singularity works [2021-03-18 09:56:09] Set ATHENA_PROC_NUMBER=7 [2021-03-18 09:56:09] Starting ATLAS job with PandaID=5002850558 [2021-03-18 09:56:09] Running command: /usr/bin/singularity exec --pwd /var/lib/boinc/slots/4 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh [2021-03-18 10:13:06] *** The last 200 lines of the pilot log: *** [2021-03-18 10:13:06] "externalCpuTime": 5, [2021-03-18 10:13:06] "processedEvents": 2, [2021-03-18 10:13:06] "trfPredata": null, [2021-03-18 10:13:06] "wallTime": 879 [2021-03-18 10:13:06] } [2021-03-18 10:13:06] } [2021-03-18 10:13:06] } [2021-03-18 10:13:06] 2021-03-18 09:12:05,995 | DEBUG | queue_monitor | pilot.user.atlas.common | update_server | no need to update logstash for this job [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | INFO | queue_monitor | pilot.control.job | send_state | pilot will not update the server (heartbeat message will be written to file) [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | INFO | queue_monitor | pilot.control.job | send_state | job 5002850558 has finished - writing final server update [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | DEBUG | queue_monitor | pilot.control.job | get_data_structure | building data structure to be sent to server with heartbeat [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | job definition core count: 7 [2021-03-18 10:13:06] 2021-03-18 09:12:05,996 | INFO | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | will not add max space = -36578997 B to job metrics [2021-03-18 10:13:06] 2021-03-18 09:12:05,997 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted [2021-03-18 10:13:06] 2021-03-18 09:12:05,997 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time [2021-03-18 10:13:06] 2021-03-18 09:12:05,997 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 332.49 B/s (using 8 data points, chi2=82639) [2021-03-18 10:13:06] 2021-03-18 09:12:05,997 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics | job metrics="actualCoreCount=1 nEvents=2 dbTime=32.31 dbData=4274626 leak=332.49 chi2=82639" [2021-03-18 10:13:06] 2021-03-18 09:12:05,998 | INFO | queue_monitor | pilot.control.job | get_data_structure | mean actualcorecount: 2.923077 [2021-03-18 10:13:06] 2021-03-18 09:12:05,998 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 2 (read) [2021-03-18 10:13:06] 2021-03-18 09:12:05,999 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc/slots/4/PanDA_Pilot-5002850558/memory_monitor_summary.json (trf name=prmon) [2021-03-18 10:13:06] 2021-03-18 09:12:06,000 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 33272, 'nprocs': 7, 'nthreads': 7, 'rx_bytes': 44363880, 'wtime': 858, 'rss': 1677324, 'write_bytes': 2281472, 'vmem': 2894584, 'read_bytes': 1746674688, 'stime': 24, 'tx_bytes': 14155710, 'pss': 1654492, 'wchar': 5525321, 'rchar': 571359475, 'tx_packets': 15550, 'swap': 0, 'utime': 562}, 'Avg': {'write_bytes': 2657.0, 'nprocs': 5.066, 'nthreads': 5.866, 'rx_bytes': 51672.0, 'rx_packets': 38.753, 'vmem': 2435999.0, 'read_bytes': 2034423.0, 'swap': 0.0, 'tx_bytes': 16487.0, 'pss': 1209036.0, 'wchar': 6435.0, 'rchar': 665485.0, 'tx_packets': 18.111, 'rss': 1234350.0}, 'HW': {'mem': {'MemTotal': 24921008}, 'cpu': {'CoresPerSocket': 7, 'ModelName': 'AMD Ryzen 9 3950X 16-Core Processor', 'ThreadsPerCore': 1, 'CPUs': 7, 'Sockets': 1}}, 'prmon': {'Version': '2.2.0'}} [2021-03-18 10:13:06] 2021-03-18 09:12:06,001 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json [2021-03-18 10:13:06] 2021-03-18 09:12:06,001 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json [2021-03-18 10:13:06] 2021-03-18 09:12:06,001 | INFO | queue_monitor | pilot.util.timing | timing_report | .............................. [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . Timing measurements: [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . get job = 0 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . initial setup = 1 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload setup = 16 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . total setup = 17 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-in = 0 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload execution = 906 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-out = 1 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | INFO | queue_monitor | pilot.util.timing | timing_report | .............................. [2021-03-18 10:13:06] 2021-03-18 09:12:06,003 | DEBUG | queue_monitor | pilot.control.job | send_state | is_harvester_mode(args) : False [2021-03-18 10:13:06] 2021-03-18 09:12:06,004 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'pilotErrorCode': 0, 'rateWBYTES': 2657.0, 'pilotID': 'http://aipanda404.cern.ch/data/jobs/2021-03-18/BOINC-TEST/5002850558.out|PR|2.9.6 (20)', 'meanCoreCount': 2.923076923076923, 'totRBYTES': 1746674688, 'siteName': 'BOINC-TEST', 'avgVMEM': 2435999.0, 'coreCount': 7, 'totWCHAR': 5525321, 'rateRCHAR': 665485.0, 'jobId': '5002850558', 'totRCHAR': 571359475, 'exeErrorCode': 0, 'rateWCHAR': 6435.0, 'metaData': '{\n "cmdLine": "\'/cvmfs/atlas.cern.ch/repo/sw/software/21.0/AtlasOffline/21.0.16/InstallArea/x86_64-slc6-gcc49-opt/share/Sim_tf.py\' \'--maxEvents=2\' \'--skipEvents=0\' \'--firstEvent=118001\' \'--randomSeed=119\' \'--DBRelease=all:current\' \'--geometryVersion=default:ATLAS-R2-2016-01-00-01_VALIDATION\' \'--conditionsTag\' \'default:OFLCOND-MC16-SDR-14\' \'--physicsList=FTFP_BERT_ATL_VALIDATION\' \'--preExec\' \'EVNTtoHITS:simFlags.SimBarcodeOffset.set_Value_and_Lock(200000)\' \'EVNTtoHITS:simFlags.TRTRangeCut=30.0;simFlags.TightMuonStepping=True\' \'--postInclude\' \'default:RecJobTransforms/UseFrontier.py\' \'--simulator=FullG4\' \'--truthStrategy=MC15aPlus\' \'--DataRunNumber=361106\' \'--outputHitsFile\' \'output.1.32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.pool.root\' \'--inputEvgenFile\' \'EVNT.04972714._000023.pool.root.1\'", \n "created": "2021-03-18T10:11:48", \n "executor": [\n {\n "asetup": null, \n "errMsg": "", \n "exeConfig": {\n "inputs": [\n "EVNT"\n ], \n "outputs": [\n "HITS"\n ], \n "script": "athena.py", \n "substep": "sim"\n }, \n "logfileReport": {\n "countSummary": {\n "CATASTROPHE": 0, \n "CRITICAL": 0, \n "DEBUG": 0, \n "ERROR": 0, \n "FATAL": 0, \n "IGNORED": 0, \n "INFO": 2772, \n "UNKNOWN": 6340, \n "VERBOSE": 0, \n "WARNING": 31\n }, \n "details": {}\n }, \n "metaData": {}, \n "name": "EVNTtoHITS", \n "rc": 0, \n "statusOK": true, \n "validation": true\n }\n ], \n "exitAcronym": "OK", \n "exitCode": 0, \n "exitMsg": "OK", \n "exitMsgExtra": "", \n "files": {\n "input": [\n {\n "dataset": null, \n "nentries": 1000, \n "subFiles": [\n {\n "file_guid": "527922C2-75F2-064D-A171-672D7A39A6CB", \n "name": "EVNT.04972714._000023.pool.root.1"\n }\n ], \n "type": "EVNT"\n }\n ], \n "output": [\n {\n "argName": "outputHITSFile", \n "dataset": null, \n "subFiles": [\n {\n "file_guid": "BCBC03D9-0FED-6943-BEE8-91D957D0261C", \n "file_size": 1820268, \n "name": "output.1.32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.pool.root", \n "nentries": 2\n }\n ], \n "type": "HITS"\n }\n ]\n }, \n "name": "Sim_tf", \n "reportVersion": "2.0.7", \n "resource": {\n "dbDataTotal": 8549252, \n "dbTimeTotal": 64.62, \n "executor": {\n "EVNTtoHITS": {\n "cpuTime": 595, \n "dbData": 4274626, \n "dbTime": 32.31, \n "memory": {\n "Avg": {\n "avgPSS": 836, \n "avgRSS": 2980, \n "avgSwap": 0, \n "avgVMEM": 11912, \n "rateRBYTES": 0, \n "rateRCHAR": 11, \n "rateWBYTES": 0, \n "rateWCHAR": 0\n }, \n "Max": {\n "maxPSS": 847, \n "maxRSS": 2980, \n "maxSwap": 0, \n "maxVMEM": 11912, \n "totRBYTES": 0, \n "totRCHAR": 9817, \n "totWBYTES": 0, \n "totWCHAR": 89\n }\n }, \n "nevents": 2, \n "postExe": {\n "cpuTime": 3, \n "wallTime": 1\n }, \n "preExe": {\n "cpuTime": 1, \n "wallTime": 4\n }, \n "total": {\n "cpuTime": 599, \n "wallTime": 863\n }, \n "validation": {\n "cpuTime": 0, \n "wallTime": 1\n }, \n "wallTime": 857\n }\n }, \n "machine": {\n "cpu_family": "23", \n "linux_distribution": [\n "CentOS Linux", \n "7.8.2003", \n "Core"\n ], \n "model": "113", \n "model_name": "AMD Ryzen 9 3950X 16-Core Processor", \n "node": "RYZEN9COS8", \n "platform": "Linux-4.18.0-240.15.1.el8_3.x86_64-x86_64-with-centos-7.8.2003-Core"\n }, \n "transform": {\n "cpuEfficiency": 0.6849, \n "cpuPWEfficiency": 0.6849, \n "cpuTime": 7, \n "cpuTimeTotal": 599, \n "externalCpuTime": 5, \n "processedEvents": 2, \n "trfPredata": null, \n "wallTime": 879\n }\n }\n}', 'xml': '{"output.1.32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.pool.root": {"adler32": "7fe335ca", "surl": "root://eosatlas.cern.ch:1094//eos/atlas/atlasdatadisk/rucio/hc_test/dd/e5/output.1.32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.pool.root", "guid": "BCBC03D9-0FED-6943-BEE8-91D957D0261C", "fsize": 1820268}, "32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.1.job.log.tgz": {"adler32": "e47e7181", "surl": "root://eosatlas.cern.ch:1094//eos/atlas/atlasdatadisk/rucio/hc_test/9f/cb/32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.1.job.log.tgz", "guid": "3e6d0a0a-33e7-4902-aa41-67486e19a233", "fsize": 162503}}', 'maxVMEM': 2894584, 'cpuConversionFactor': 1.0, 'avgSWAP': 0.0, 'state': 'finished', 'transExitCode': 0, 'pilotErrorDiag': '', 'node': 'RYZEN9COS8', 'avgRSS': 1234350.0, 'avgPSS': 1209036.0, 'timestamp': '2021-03-18T10:12:05+01:00', 'pilotTiming': '0|0|906|1|17', 'attemptNr': 0, 'totWBYTES': 2281472, 'nEvents': 2, 'rateRBYTES': 2034423.0, 'pilotLog': '', 'cpuConsumptionTime': 628, 'startTime': 1616057780.782636, 'cpuConsumptionUnit': 's+AMD Ryzen 9 3950X 16-Core Processor 512 KB', 'exeErrorDiag': '', 'maxSWAP': 0, 'jobMetrics': 'actualCoreCount=1 nEvents=2 dbTime=32.31 dbData=4274626 leak=332.49 chi2=82639', 'maxRSS': 1677324, 'schedulerID': 'harvester-CERN_central_ACTA', 'endTime': 1616058726.003565, 'maxPSS': 1654492} [2021-03-18 10:13:06] 2021-03-18 09:12:06,004 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file /var/lib/boinc/slots/4/heartbeat.json [2021-03-18 10:13:06] 2021-03-18 09:12:06,004 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 5002850558 was dequeued from the monitored payloads queue [2021-03-18 10:13:06] 2021-03-18 09:12:06,231 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted [2021-03-18 10:13:06] 2021-03-18 09:12:06,272 | INFO | retrieve | pilot.control.job | make_job_report | [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | job summary report [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | -------------------------------------------------- [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | PanDA job id: 5002850558 [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | task id: NULL [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | errors: (none) [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | pilot state: finished [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | transexitcode: 0 [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | exeerrorcode: 0 [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | exeerrordiag: [2021-03-18 10:13:06] 2021-03-18 09:12:06,273 | INFO | retrieve | pilot.control.job | make_job_report | exitcode: 0 [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | exitmsg: OK [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | cpuconsumptiontime: 628 s [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | nevents: 2 [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | neventsw: 0 [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | pid: 2899730 [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | pgrp: 2899730 [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | corecount: 7 [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | event service: False [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | sizes: {0: 8496913, 1: 8497342, 2: 8497520, 3: 8497565, 932: 8539882, 933: 8540024, 929: 8539834, 13: 8497589, 927: 8530743} [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | -------------------------------------------------- [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | INFO | retrieve | pilot.control.job | make_job_report | [2021-03-18 10:13:06] 2021-03-18 09:12:06,274 | DEBUG | retrieve | pilot.control.job | has_job_completed | ls -lF /var/lib/boinc/slots/4: [2021-03-18 10:13:06] [2021-03-18 10:13:06] 2021-03-18 09:12:06,275 | INFO | retrieve | pilot.util.container | execute | executing command: ls -lF /var/lib/boinc/slots/4 [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | DEBUG | retrieve | pilot.control.job | has_job_completed | total 44748 [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 192186 Mar 18 10:12 32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.1.job.log [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 162503 Mar 18 10:12 32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.1.job.log.tgz [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 38019645 Mar 18 09:55 EVNT.04972714._000023.pool.root.1 [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 133 Mar 18 09:56 K1VNDmXK3gynfZGDcpSWOuwoABFKDmABFKDm2IFNDmtCFKDmxVdOwn.diag [2021-03-18 10:13:06] drwxrwx---. 2 boinc boinc 4096 Mar 18 10:12 PanDA_Pilot-5002850558/ [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1174577 Mar 18 09:56 agis_schedconf.cvmfs.json [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 0 Mar 18 09:55 boinc_lockfile [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 8192 Mar 18 10:11 boinc_mmap_file [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 532 Mar 18 10:11 boinc_task_state.xml [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1943413 Mar 18 09:56 cric_ddmendpoints.json [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 6539 Mar 18 10:12 heartbeat.json [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 6187 Mar 18 09:55 init_data.xml [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 1048541 Mar 18 09:55 input.tar.gz [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 112 Mar 18 09:55 job.xml [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1004 Mar 18 10:11 memory_monitor_summary.json [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1820268 Mar 18 10:11 output.1.32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.pool.root [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 546 Mar 18 10:12 output.list [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 2618 Mar 18 09:56 pandaJob.out [2021-03-18 10:13:06] drwx------. 5 boinc boinc 4096 Mar 18 09:56 pilot2/ [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 1042975 Mar 18 09:31 pilot2.tar.gz [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 174097 Mar 18 10:12 pilotlog.txt [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 4974 Mar 18 09:37 queuedata.json [2021-03-18 10:13:06] -rwxr-xr-x. 1 boinc boinc 5573 Mar 18 09:55 run_atlas* [2021-03-18 10:13:06] -rwx------. 1 boinc boinc 20043 Mar 18 09:37 runpilot2-wrapper.sh* [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 407 Mar 18 09:56 runtime_log [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 5458 Mar 18 09:56 runtime_log.err [2021-03-18 10:13:06] drwxrwx--x. 2 boinc boinc 68 Mar 18 09:55 shared/ [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 16507 Mar 18 09:55 start_atlas.sh [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 1925 Mar 18 09:56 stderr.txt [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 107 Mar 18 09:55 wrapper_26015_x86_64-pc-linux-gnu [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 24 Mar 18 10:11 wrapper_checkpoint.txt [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,300 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,301 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,301 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,301 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,301 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,301 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,301 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,301 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,305 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,305 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,306 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,306 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s) [2021-03-18 10:13:06] 2021-03-18 09:12:06,306 | INFO | retrieve | pilot.control.job | has_job_completed | job 5002850558 has completed (purged errors) [2021-03-18 10:13:06] 2021-03-18 09:12:06,306 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called [2021-03-18 10:13:06] 2021-03-18 09:12:06,308 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/4/PanDA_Pilot-5002850558 [2021-03-18 10:13:06] 2021-03-18 09:12:07,318 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [2899730] [2021-03-18 10:13:06] 2021-03-18 09:12:07,318 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 2899730 [2021-03-18 10:13:06] 2021-03-18 09:12:07,319 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes [2021-03-18 10:13:06] 2021-03-18 09:12:08,323 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes [2021-03-18 10:13:06] 2021-03-18 09:12:08,323 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=2899730 [2021-03-18 10:13:06] 2021-03-18 09:12:08,435 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [2899730] (in reverse order) [2021-03-18 10:13:06] 2021-03-18 09:12:08,501 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) [2021-03-18 10:13:06] 2021-03-18 09:12:08,501 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs [2021-03-18 10:13:06] 2021-03-18 09:12:08,501 | DEBUG | retrieve | pilot.util.queuehandling | purge_queue | queue purged [2021-03-18 10:13:06] 2021-03-18 09:12:08,502 | INFO | retrieve | pilot.control.job | retrieve | ready for new job [2021-03-18 10:13:06] 2021-03-18 09:12:08,502 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging [2021-03-18 10:13:06] 2021-03-18 09:12:08,502 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 10:13:06] 2021-03-18 09:12:08,502 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.9.6 (20) *** [2021-03-18 10:13:06] 2021-03-18 09:12:08,503 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 10:13:06] 2021-03-18 09:12:08,503 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | [2021-03-18 10:13:06] 2021-03-18 09:12:08,503 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM [2021-03-18 10:13:06] 2021-03-18 09:12:08,503 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: [2021-03-18 10:13:06] 2021-03-18 09:12:08,591 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | [2021-03-18 10:13:06] LSB Version: :core-4.1-amd64:core-4.1-noarch [2021-03-18 10:13:06] Distributor ID: CentOS [2021-03-18 10:13:06] Description: CentOS Linux release 7.8.2003 (Core) [2021-03-18 10:13:06] Release: 7.8.2003 [2021-03-18 10:13:06] Codename: Core [2021-03-18 10:13:06] 2021-03-18 09:12:08,591 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | **************************************** [2021-03-18 10:13:06] 2021-03-18 09:12:09,093 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/4 [2021-03-18 10:13:06] 2021-03-18 09:12:09,108 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (33071038464 B) [2021-03-18 10:13:06] 2021-03-18 09:12:09,108 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job [2021-03-18 10:13:06] 2021-03-18 09:12:09,108 | DEBUG | retrieve | pilot.control.job | retrieve | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:09,108 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:09,154 | WARNING | monitor | pilot.control.monitor | control | aborting monitor loop since graceful_stop has been set [2021-03-18 10:13:06] 2021-03-18 09:12:09,155 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended [2021-03-18 10:13:06] 2021-03-18 09:12:09,156 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration [2021-03-18 10:13:06] 2021-03-18 09:12:09,291 | DEBUG | execute_payloads | pilot.control.payload | execute_payloads | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:09,291 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:09,297 | DEBUG | failed_post | pilot.control.payload | failed_post | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:09,298 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:09,310 | DEBUG | validate | pilot.control.job | validate | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:09,310 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:09,759 | DEBUG | copytool_in | pilot.control.data | copytool_in | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:09,759 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:09,802 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:09,803 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:09,903 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set [2021-03-18 10:13:06] 2021-03-18 09:12:09,904 | DEBUG | payload | pilot.control.payload | control | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:09,904 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:10,105 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set [2021-03-18 10:13:06] 2021-03-18 09:12:10,105 | DEBUG | job | pilot.control.job | control | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:10,106 | DEBUG | job | pilot.control.job | control | [job] control thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:10,159 | DEBUG | copytool_out | pilot.control.data | copytool_out | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:10,160 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:10,198 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set [2021-03-18 10:13:06] 2021-03-18 09:12:10,198 | DEBUG | data | pilot.control.data | control | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:10,198 | DEBUG | data | pilot.control.data | control | [data] control thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:10,260 | DEBUG | validate_post | pilot.control.payload | validate_post | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:10,260 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:10,451 | DEBUG | validate_pre | pilot.control.payload | validate_pre | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:10,451 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:11,188 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration [2021-03-18 10:13:06] 2021-03-18 09:12:11,239 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration [2021-03-18 10:13:06] 2021-03-18 09:12:11,239 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:11,239 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished [2021-03-18 10:13:06] 2021-03-18 09:12:14,191 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | will not set job_aborted yet [2021-03-18 10:13:06] 2021-03-18 09:12:14,191 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished [2021-03-18 10:13:06] 2021-03-18 09:13:05,590 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s) [2021-03-18 10:13:06] 2021-03-18 09:13:05,591 | DEBUG | job_monitor | pilot.util.processes | threads_aborted | aborting since the last relevant thread is about to finish [2021-03-18 10:13:06] 2021-03-18 09:13:05,591 | DEBUG | job_monitor | pilot.control.job | job_monitor | will proceed to set job_aborted [2021-03-18 10:13:06] 2021-03-18 09:13:05,591 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished [2021-03-18 10:13:06] 2021-03-18 09:13:05,883 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) [2021-03-18 10:13:06] 2021-03-18 09:13:05,884 | INFO | MainThread | root | wrap_up | traces error code: 0 [2021-03-18 10:13:06] 2021-03-18 09:13:05,884 | INFO | MainThread | root | wrap_up | pilot has finished [2021-03-18 10:13:06] 2021-03-18 09:13:05,957 [wrapper] ==== pilot stdout END ==== [2021-03-18 10:13:06] 2021-03-18 09:13:05,961 [wrapper] ==== wrapper stdout RESUME ==== [2021-03-18 10:13:06] 2021-03-18 09:13:05,965 [wrapper] Pilot exit status: 0 [2021-03-18 10:13:06] 2021-03-18 09:13:05,980 [wrapper] pandaids: 5002850558 [2021-03-18 10:13:06] 2021-03-18 09:13:05,992 [wrapper] apfmon messages muted [2021-03-18 10:13:06] 2021-03-18 09:13:05,996 [wrapper] Test setup, not cleaning [2021-03-18 10:13:06] 2021-03-18 09:13:06,001 [wrapper] ==== wrapper stdout END ==== [2021-03-18 10:13:06] 2021-03-18 09:13:06,004 [wrapper] ==== wrapper stderr END ==== [2021-03-18 10:13:06] 2021-03-18 09:13:06,012 [wrapper] wrapperexiting ec=0, duration=1016 [2021-03-18 10:13:06] 2021-03-18 09:13:06,015 [wrapper] apfmon messages muted [2021-03-18 10:13:06] *** Error codes and diagnostics *** [2021-03-18 10:13:06] "exeErrorCode": 0, [2021-03-18 10:13:06] "exeErrorDiag": "", [2021-03-18 10:13:06] "pilotErrorCode": 0, [2021-03-18 10:13:06] "pilotErrorDiag": "", [2021-03-18 10:13:06] *** Listing of results directory *** [2021-03-18 10:13:06] insgesamt 46716 [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 1042975 18. Mär 09:31 pilot2.tar.gz [2021-03-18 10:13:06] -rwx------. 1 boinc boinc 20043 18. Mär 09:37 runpilot2-wrapper.sh [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 4974 18. Mär 09:37 queuedata.json [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 107 18. Mär 09:55 wrapper_26015_x86_64-pc-linux-gnu [2021-03-18 10:13:06] -rwxr-xr-x. 1 boinc boinc 5573 18. Mär 09:55 run_atlas [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 112 18. Mär 09:55 job.xml [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 6187 18. Mär 09:55 init_data.xml [2021-03-18 10:13:06] drwxrwx--x. 2 boinc boinc 68 18. Mär 09:55 shared [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 0 18. Mär 09:55 boinc_lockfile [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 16507 18. Mär 09:55 start_atlas.sh [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 1048541 18. Mär 09:55 input.tar.gz [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 38019645 18. Mär 09:55 EVNT.04972714._000023.pool.root.1 [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 2618 18. Mär 09:56 pandaJob.out [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1174577 18. Mär 09:56 agis_schedconf.cvmfs.json [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1943413 18. Mär 09:56 cric_ddmendpoints.json [2021-03-18 10:13:06] drwx------. 5 boinc boinc 4096 18. Mär 09:56 pilot2 [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1820268 18. Mär 10:11 output.1.32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.pool.root [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 532 18. Mär 10:11 boinc_task_state.xml [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1004 18. Mär 10:11 memory_monitor_summary.json [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 162503 18. Mär 10:12 32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.1.job.log.tgz [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 6539 18. Mär 10:12 heartbeat.json [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 25 18. Mär 10:12 wrapper_checkpoint.txt [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 8192 18. Mär 10:12 boinc_mmap_file [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 8823 18. Mär 10:13 pilotlog.txt [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 209074 18. Mär 10:13 32de2e02-7939-45bf-a540-b98f62f1dbf5_89877.1.job.log [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 546 18. Mär 10:13 output.list [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 748 18. Mär 10:13 runtime_log [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 2211840 18. Mär 10:13 result.tar.gz [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 9441 18. Mär 10:13 runtime_log.err [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 560 18. Mär 10:13 K1VNDmXK3gynfZGDcpSWOuwoABFKDmABFKDm2IFNDmtCFKDmxVdOwn.diag [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 39734 18. Mär 10:13 stderr.txt [2021-03-18 10:13:06] HITS file was successfully produced: [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1820268 18. Mär 10:11 shared/HITS.pool.root.1 [2021-03-18 10:13:06] *** Contents of shared directory: *** [2021-03-18 10:13:06] insgesamt 42116 [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 38019645 18. Mär 09:55 ATLAS.root_0 [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 16507 18. Mär 09:55 start_atlas.sh [2021-03-18 10:13:06] -rw-r--r--. 1 boinc boinc 1048541 18. Mär 09:55 input.tar.gz [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 1820268 18. Mär 10:11 HITS.pool.root.1 [2021-03-18 10:13:06] -rw-------. 1 boinc boinc 2211840 18. Mär 10:13 result.tar.gz 10:13:07 (2892662): run_atlas exited; CPU time 618.028098 10:13:07 (2892662): called boinc_finish(0) </stderr_txt> ]]>
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