Name XbQKDmg53Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmtSFKDmFH6H5n_0
Workunit 2096836
Created 28 Jun 2021, 10:54:45 UTC
Sent 28 Jun 2021, 11:01:18 UTC
Report deadline 5 Jul 2021, 11:01:18 UTC
Received 28 Jun 2021, 11:23:39 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 3815
Run time 21 min 57 sec
CPU time 8 min 0 sec
Validate state Valid
Credit 69.10
Device peak FLOPS 22.66 GFLOPS
Application version ATLAS Simulation v1.04 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.44 GB
Peak swap size 3.81 GB
Peak disk usage 79.67 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
07:01:28 (2007357): wrapper (7.7.26015): starting
07:01:28 (2007357): wrapper: running run_atlas (--nthreads 4)
[2021-06-28 07:01:28] Arguments: --nthreads 4
[2021-06-28 07:01:28] Threads: 4
[2021-06-28 07:01:28] Checking for CVMFS
[2021-06-28 07:01:30] Probing /cvmfs/atlas.cern.ch... OK
[2021-06-28 07:01:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-06-28 07:01:32] Running cvmfs_config stat atlas.cern.ch
[2021-06-28 07:01:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-06-28 07:01:33] 2.8.1.0 2007563 0 24720 87355 3 1 3199753 4194304 0 130560 0 0 0.000 529 608 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2021-06-28 07:01:33] CVMFS is ok
[2021-06-28 07:01:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-06-28 07:01:33] Small home clusters do not require a local http proxy but it is suggested if
[2021-06-28 07:01:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2021-06-28 07:01:33] Further information can be found at the LHC@home message board.
[2021-06-28 07:01:33] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-06-28 07:01:33] Checking for singularity binary...
[2021-06-28 07:01:33] Using singularity found in PATH at /usr/local/bin/singularity
[2021-06-28 07:01:33] Running /usr/local/bin/singularity --version
[2021-06-28 07:01:33] singularity-ce version 3.8.0-rc.1+105-g86d212c09
[2021-06-28 07:01:33] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-06-28 07:01:33] HP600-1
[2021-06-28 07:01:33] Singularity works
[2021-06-28 07:01:33] Set ATHENA_PROC_NUMBER=4
[2021-06-28 07:01:33] Starting ATLAS job with PandaID=5102221169
[2021-06-28 07:01:33] Running command: /usr/local/bin/singularity exec --pwd /var/lib/boinc-client/slots/1 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-06-28 07:23:22]  *** The last 200 lines of the pilot log: ***
[2021-06-28 07:23:22]       "cpuTime": 3, 
[2021-06-28 07:23:22]       "cpuTimeTotal": 469, 
[2021-06-28 07:23:22]       "externalCpuTime": 2, 
[2021-06-28 07:23:22]       "processedEvents": 2, 
[2021-06-28 07:23:22]       "trfPredata": null, 
[2021-06-28 07:23:22]       "wallTime": 1127
[2021-06-28 07:23:22]     }
[2021-06-28 07:23:22]   }
[2021-06-28 07:23:22] }
[2021-06-28 07:23:22] 2021-06-28 11:22:32,873 | DEBUG    | queue_monitor       | pilot.user.atlas.common          | update_server             | no need to update logstash for this job
[2021-06-28 07:23:22] 2021-06-28 11:22:32,873 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | state=finished
[2021-06-28 07:23:22] 2021-06-28 11:22:32,873 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=running
[2021-06-28 07:23:22] 2021-06-28 11:22:32,873 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=finished
[2021-06-28 07:23:22] 2021-06-28 11:22:32,873 | INFO     | queue_monitor       | pilot.control.job                | send_state                | pilot will not update the server (heartbeat message will be written to file)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,873 | INFO     | queue_monitor       | pilot.control.job                | send_state                | job 5102221169 has finished - writing final server update
[2021-06-28 07:23:22] 2021-06-28 11:22:32,873 | DEBUG    | queue_monitor       | pilot.user.atlas.jobmetrics      | get_job_metrics_string    | job definition core count: 4
[2021-06-28 07:23:22] 2021-06-28 11:22:32,874 | INFO     | queue_monitor       | pilot.user.atlas.jobmetrics      | get_job_metrics_string    | will not add max space = -36706174 B to job metrics
[2021-06-28 07:23:22] 2021-06-28 11:22:32,874 | DEBUG    | queue_monitor       | pilot.api.analytics              | get_fitted_data           | removing tails from data to be fitted
[2021-06-28 07:23:22] 2021-06-28 11:22:32,874 | INFO     | queue_monitor       | pilot.api.analytics              | get_fitted_data           | fitting pss+swap vs Time
[2021-06-28 07:23:22] 2021-06-28 11:22:32,874 | INFO     | queue_monitor       | pilot.api.analytics              | get_fitted_data           | current memory leak: 1291.43 B/s (using 13 data points, chi2=109402)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,875 | DEBUG    | queue_monitor       | pilot.user.atlas.jobmetrics      | get_job_metrics           | job metrics="actualCoreCount=1 nEvents=2 dbTime=135.01 dbData=4274626 leak=129
[2021-06-28 07:23:22] 2021-06-28 11:22:32,875 | INFO     | queue_monitor       | pilot.control.job                | get_data_structure        | mean actualcorecount: 2.470588
[2021-06-28 07:23:22] 2021-06-28 11:22:32,875 | INFO     | queue_monitor       | pilot.control.job                | get_data_structure        | total number of processed events: 2 (read)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,891 | INFO     | queue_monitor       | pilot.util.container             | execute                   | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2021-06-28 07:23:22] 2021-06-28 11:22:32,908 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_values         | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-5102221169/memory_monito
[2021-06-28 07:23:22] 2021-06-28 11:22:32,909 | DEBUG    | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Avg': {'nprocs': 4.9, 'nthreads': 5.7, 'pss': 960949.0, '
[2021-06-28 07:23:22] 2021-06-28 11:22:32,909 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from prmon json
[2021-06-28 07:23:22] 2021-06-28 11:22:32,909 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from prmon json
[2021-06-28 07:23:22] 2021-06-28 11:22:32,909 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | ..............................
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . Timing measurements:
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . get job = 0 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . initial setup = 1 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . payload setup = 9 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . total setup = 10 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . stage-in = 0 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . payload execution = 1207 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . stage-out = 0 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | ..............................
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | DEBUG    | queue_monitor       | pilot.control.job                | send_state                | is_harvester_mode(args) : False
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | DEBUG    | queue_monitor       | pilot.control.job                | write_heartbeat_to_file   | heartbeat dictionary: {'jobId': '5102221169', 'state': 'finished', 'timestamp'
[2021-06-28 07:23:22] 2021-06-28 11:22:32,910 | DEBUG    | queue_monitor       | pilot.control.job                | write_heartbeat_to_file   | wrote heartbeat to file /var/lib/boinc-client/slots/1/heartbeat.json
[2021-06-28 07:23:22] 2021-06-28 11:22:32,911 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | job 5102221169 was dequeued from the monitored payloads queue
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | tmp job object deleted
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | 
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | job summary report
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | --------------------------------------------------
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | PanDA job id: 5102221169
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | task id: NULL
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | errors: (none)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | status: LOG_TRANSFER = DONE 
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | pilot state: finished 
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | transexitcode: 0
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exeerrorcode: 0
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exeerrordiag: 
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exitcode: 0
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exitmsg: OK
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | cpuconsumptiontime: 487 s
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | nevents: 2
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | neventsw: 0
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | pid: 2015229
[2021-06-28 07:23:22] 2021-06-28 11:22:32,969 | INFO     | retrieve            | pilot.control.job                | make_job_report           | pgrp: 2015229
[2021-06-28 07:23:22] 2021-06-28 11:22:32,970 | INFO     | retrieve            | pilot.control.job                | make_job_report           | corecount: 4
[2021-06-28 07:23:22] 2021-06-28 11:22:32,970 | INFO     | retrieve            | pilot.control.job                | make_job_report           | event service: False
[2021-06-28 07:23:22] 2021-06-28 11:22:32,970 | INFO     | retrieve            | pilot.control.job                | make_job_report           | sizes: {18651921: 3856372, 18651932: 3856258, 18653152: 3884565, 18653153: 389
[2021-06-28 07:23:22] 2021-06-28 11:22:32,970 | INFO     | retrieve            | pilot.control.job                | make_job_report           | --------------------------------------------------
[2021-06-28 07:23:22] 2021-06-28 11:22:32,970 | INFO     | retrieve            | pilot.control.job                | make_job_report           | 
[2021-06-28 07:23:22] 2021-06-28 11:22:32,970 | DEBUG    | retrieve            | pilot.control.job                | has_job_completed         | ls -lF /var/lib/boinc-client/slots/1:
[2021-06-28 07:23:22] 
[2021-06-28 07:23:22] 2021-06-28 11:22:32,970 | INFO     | retrieve            | pilot.util.container             | execute                   | executing command: ls -lF /var/lib/boinc-client/slots/1
[2021-06-28 07:23:22] 2021-06-28 11:22:32,987 | DEBUG    | retrieve            | pilot.control.job                | has_job_completed         | total 43136
[2021-06-28 07:23:22] -rw------- 1 boinc boinc   193320 Jun 28 07:22 47f75547-5ddd-419d-9895-30360a6aabb9_95156.1.job.log
[2021-06-28 07:23:22] -rw------- 1 boinc boinc   263571 Jun 28 07:22 47f75547-5ddd-419d-9895-30360a6aabb9_95156.1.job.log.tgz
[2021-06-28 07:23:22] -rw------- 1 boinc boinc  1060239 Jun 28 07:01 agis_schedconf.cvmfs.json
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc        0 Jun 28 07:01 boinc_lockfile
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     8192 Jun 28 07:22 boinc_mmap_file
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      533 Jun 28 07:21 boinc_task_state.xml
[2021-06-28 07:23:22] -rw------- 1 boinc boinc  1962805 Jun 28 07:01 cric_ddmendpoints.json
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc 37658468 Jun 28 07:01 EVNT.04972714._000029.pool.root.1
[2021-06-28 07:23:22] -rw------- 1 boinc boinc     6537 Jun 28 07:22 heartbeat.json
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     8875 Jun 28 07:01 init_data.xml
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc   330778 Jun 28 07:01 input.tar.gz
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      112 Jun 28 07:01 job.xml
[2021-06-28 07:23:22] -rw------- 1 boinc boinc     1006 Jun 28 07:22 memory_monitor_summary.json
[2021-06-28 07:23:22] -rw------- 1 boinc boinc  2043605 Jun 28 07:21 output.1.47f75547-5ddd-419d-9895-30360a6aabb9_95156.pool.root
[2021-06-28 07:23:22] -rw------- 1 boinc boinc      536 Jun 28 07:22 output.list
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     2612 Jun 28 07:01 pandaJob.out
[2021-06-28 07:23:22] drwxrwx--- 2 boinc boinc     4096 Jun 28 07:22 PanDA_Pilot-5102221169/
[2021-06-28 07:23:22] drwx------ 4 boinc boinc     4096 Jun 28 07:01 pilot2/
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc   320775 Jun 28 06:23 pilot2.tar.gz
[2021-06-28 07:23:22] -rw------- 1 boinc boinc   173085 Jun 28 07:22 pilotlog.txt
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     3209 Jun 28 06:54 queuedata.json
[2021-06-28 07:23:22] -rwxr-xr-x 1 boinc boinc     6966 Jun 28 07:01 run_atlas*
[2021-06-28 07:23:22] -rwx------ 1 boinc boinc    20456 Jun 28 06:54 runpilot2-wrapper.sh*
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      407 Jun 28 07:01 runtime_log
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     5560 Jun 28 07:01 runtime_log.err
[2021-06-28 07:23:22] drwxrwx--x 2 boinc boinc     4096 Jun 28 07:01 shared/
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc    16551 Jun 28 07:01 start_atlas.sh
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     2133 Jun 28 07:01 stderr.txt
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      107 Jun 28 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc       25 Jun 28 07:22 wrapper_checkpoint.txt
[2021-06-28 07:23:22] -rw------- 1 boinc boinc      130 Jun 28 07:01 XbQKDmg53Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmtSFKDmFH6H5n.diag
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue jobs has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue payloads has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_in has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_out has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue current_data_in has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_jobs has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_payloads has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue monitored_payloads has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_jobs has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_payloads has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_in has 1 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_out has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_jobs has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_payloads has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_in has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_out has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobs has 0 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobids has 1 job(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.control.job                | has_job_completed         | job 5102221169 has completed (purged errors)
[2021-06-28 07:23:22] 2021-06-28 11:22:32,988 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | overall cleanup function is called
[2021-06-28 07:23:22] 2021-06-28 11:22:32,989 | DEBUG    | retrieve            | pilot.util.processes             | cleanup                   | work directory was removed: /var/lib/boinc-client/slots/1/PanDA_Pilot-51022211
[2021-06-28 07:23:22] 2021-06-28 11:22:33,993 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [2015229]
[2021-06-28 07:23:22] 2021-06-28 11:22:33,993 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 2015229
[2021-06-28 07:23:22] 2021-06-28 11:22:33,993 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
[2021-06-28 07:23:22] 2021-06-28 11:22:34,996 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | collected zombie processes
[2021-06-28 07:23:22] 2021-06-28 11:22:34,996 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=2015229
[2021-06-28 07:23:22] 2021-06-28 11:22:35,034 | INFO     | retrieve            | pilot.util.processes             | kill_processes            | process IDs to be killed: [2015229] (in reverse order)
[2021-06-28 07:23:22] 2021-06-28 11:22:35,064 | WARNING  | retrieve            | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
[2021-06-28 07:23:22] 2021-06-28 11:22:35,064 | INFO     | retrieve            | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
[2021-06-28 07:23:22] 2021-06-28 11:22:35,064 | DEBUG    | retrieve            | pilot.util.queuehandling         | purge_queue               | queue purged
[2021-06-28 07:23:22] 2021-06-28 11:22:35,064 | INFO     | retrieve            | pilot.control.job                | retrieve                  | ready for new job
[2021-06-28 07:23:22] 2021-06-28 11:22:35,064 | INFO     | retrieve            | root                             | retrieve                  | pilot has finished for previous job - re-establishing logging
[2021-06-28 07:23:22] 2021-06-28 11:22:35,065 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | *****************************************
[2021-06-28 07:23:22] 2021-06-28 11:22:35,065 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ***  PanDA Pilot version 2.11.2 (22)  ***
[2021-06-28 07:23:22] 2021-06-28 11:22:35,065 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | *****************************************
[2021-06-28 07:23:22] 2021-06-28 11:22:35,065 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | 
[2021-06-28 07:23:22] 2021-06-28 11:22:35,083 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | architecture information:
[2021-06-28 07:23:22] 2021-06-28 11:22:35,147 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | 
[2021-06-28 07:23:22] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2021-06-28 07:23:22] Distributor ID:	CentOS
[2021-06-28 07:23:22] Description:	CentOS Linux release 7.8.2003 (Core)
[2021-06-28 07:23:22] Release:	7.8.2003
[2021-06-28 07:23:22] Codename:	Core
[2021-06-28 07:23:22] 2021-06-28 11:22:35,147 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | *****************************************
[2021-06-28 07:23:22] 2021-06-28 11:22:35,649 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc-client/slots/1
[2021-06-28 07:23:22] 2021-06-28 11:22:35,661 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (72153563136 B)
[2021-06-28 07:23:22] 2021-06-28 11:22:35,662 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
[2021-06-28 07:23:22] 2021-06-28 11:22:35,662 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:35,662 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
[2021-06-28 07:23:22] 2021-06-28 11:22:35,662 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:35,783 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
[2021-06-28 07:23:22] 2021-06-28 11:22:35,783 | DEBUG    | payload             | pilot.control.payload            | control                   | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:35,783 | DEBUG    | execute_payloads    | pilot.control.payload            | execute_payloads          | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:35,783 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:35,784 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,074 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
[2021-06-28 07:23:22] 2021-06-28 11:22:36,279 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
[2021-06-28 07:23:22] 2021-06-28 11:22:36,279 | DEBUG    | data                | pilot.control.data               | control                   | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,279 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,339 | DEBUG    | validate_post       | pilot.control.payload            | validate_post             | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,339 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,502 | DEBUG    | validate            | pilot.control.job                | validate                  | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,502 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,642 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,642 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,662 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,662 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,701 | DEBUG    | validate_pre        | pilot.control.payload            | validate_pre              | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,701 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,754 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
[2021-06-28 07:23:22] 2021-06-28 11:22:36,754 | DEBUG    | job                 | pilot.control.job                | control                   | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,754 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:36,893 | DEBUG    | failed_post         | pilot.control.payload            | failed_post               | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:36,893 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:37,077 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:37,077 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:37,975 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
[2021-06-28 07:23:22] 2021-06-28 11:22:37,975 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:37,975 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:22:38,739 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
[2021-06-28 07:23:22] 2021-06-28 11:22:41,739 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | will not set job_aborted yet
[2021-06-28 07:23:22] 2021-06-28 11:22:41,740 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:23:22,029 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
[2021-06-28 07:23:22] 2021-06-28 11:23:22,030 | DEBUG    | job_monitor         | pilot.util.processes             | threads_aborted           | aborting since the last relevant thread is about to finish
[2021-06-28 07:23:22] 2021-06-28 11:23:22,030 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | will proceed to set job_aborted
[2021-06-28 07:23:22] 2021-06-28 11:23:22,030 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
[2021-06-28 07:23:22] 2021-06-28 11:23:22,859 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
[2021-06-28 07:23:22] 2021-06-28 11:23:22,859 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
[2021-06-28 07:23:22] 2021-06-28 11:23:22,859 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
[2021-06-28 07:23:22] 2021-06-28 11:23:22,897 [wrapper] ==== pilot stdout END ====
[2021-06-28 07:23:22] 2021-06-28 11:23:22,901 [wrapper] ==== wrapper stdout RESUME ====
[2021-06-28 07:23:22] 2021-06-28 11:23:22,905 [wrapper] Pilot exit status: 0
[2021-06-28 07:23:22] 2021-06-28 11:23:22,917 [wrapper] pandaids: 5102221169
[2021-06-28 07:23:22] 2021-06-28 11:23:22,924 [wrapper] apfmon messages muted
[2021-06-28 07:23:22] 2021-06-28 11:23:22,928 [wrapper] Test setup, not cleaning
[2021-06-28 07:23:22] 2021-06-28 11:23:22,931 [wrapper] ==== wrapper stdout END ====
[2021-06-28 07:23:22] 2021-06-28 11:23:22,935 [wrapper] ==== wrapper stderr END ====
[2021-06-28 07:23:22] 2021-06-28 11:23:22,942 [wrapper] wrapperexiting ec=0, duration=1308
[2021-06-28 07:23:22] 2021-06-28 11:23:22,946 [wrapper] apfmon messages muted
[2021-06-28 07:23:22]  *** Error codes and diagnostics ***
[2021-06-28 07:23:22]     "exeErrorCode": 0,
[2021-06-28 07:23:22]     "exeErrorDiag": "",
[2021-06-28 07:23:22]     "pilotErrorCode": 0,
[2021-06-28 07:23:22]     "pilotErrorDiag": "",
[2021-06-28 07:23:22]  *** Listing of results directory ***
[2021-06-28 07:23:22] total 45500
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc   320775 Jun 28 06:23 pilot2.tar.gz
[2021-06-28 07:23:22] -rwx------ 1 boinc boinc    20456 Jun 28 06:54 runpilot2-wrapper.sh
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     3209 Jun 28 06:54 queuedata.json
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      107 Jun 28 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2021-06-28 07:23:22] -rwxr-xr-x 1 boinc boinc     6966 Jun 28 07:01 run_atlas
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      112 Jun 28 07:01 job.xml
[2021-06-28 07:23:22] drwxrwx--x 2 boinc boinc     4096 Jun 28 07:01 shared
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     8875 Jun 28 07:01 init_data.xml
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc        0 Jun 28 07:01 boinc_lockfile
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc    16551 Jun 28 07:01 start_atlas.sh
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc   330778 Jun 28 07:01 input.tar.gz
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc 37658468 Jun 28 07:01 EVNT.04972714._000029.pool.root.1
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     2612 Jun 28 07:01 pandaJob.out
[2021-06-28 07:23:22] -rw------- 1 boinc boinc  1060239 Jun 28 07:01 agis_schedconf.cvmfs.json
[2021-06-28 07:23:22] -rw------- 1 boinc boinc  1962805 Jun 28 07:01 cric_ddmendpoints.json
[2021-06-28 07:23:22] drwx------ 4 boinc boinc     4096 Jun 28 07:01 pilot2
[2021-06-28 07:23:22] -rw------- 1 boinc boinc  2043605 Jun 28 07:21 output.1.47f75547-5ddd-419d-9895-30360a6aabb9_95156.pool.root
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      533 Jun 28 07:21 boinc_task_state.xml
[2021-06-28 07:23:22] -rw------- 1 boinc boinc     1006 Jun 28 07:22 memory_monitor_summary.json
[2021-06-28 07:23:22] -rw------- 1 boinc boinc   263571 Jun 28 07:22 47f75547-5ddd-419d-9895-30360a6aabb9_95156.1.job.log.tgz
[2021-06-28 07:23:22] -rw------- 1 boinc boinc     6537 Jun 28 07:22 heartbeat.json
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     8192 Jun 28 07:23 boinc_mmap_file
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc       25 Jun 28 07:23 wrapper_checkpoint.txt
[2021-06-28 07:23:22] -rw------- 1 boinc boinc     8510 Jun 28 07:23 pilotlog.txt
[2021-06-28 07:23:22] -rw------- 1 boinc boinc   209871 Jun 28 07:23 47f75547-5ddd-419d-9895-30360a6aabb9_95156.1.job.log
[2021-06-28 07:23:22] -rw------- 1 boinc boinc      536 Jun 28 07:23 output.list
[2021-06-28 07:23:22] -rw------- 1 boinc boinc      560 Jun 28 07:23 XbQKDmg53Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmtSFKDmFH6H5n.diag
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc     9541 Jun 28 07:23 runtime_log.err
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc      748 Jun 28 07:23 runtime_log
[2021-06-28 07:23:22] -rw------- 1 boinc boinc  2539520 Jun 28 07:23 result.tar.gz
[2021-06-28 07:23:22] -rw-r--r-- 1 boinc boinc    32810 Jun 28 07:23 stderr.txt
[2021-06-28 07:23:22] HITS file was successfully produced:
[2021-06-28 07:23:23] -rw------- 1 boinc boinc 2043605 Jun 28 07:21 shared/HITS.pool.root.1
[2021-06-28 07:23:23]  *** Contents of shared directory: ***
[2021-06-28 07:23:23] total 41596
[2021-06-28 07:23:23] -rw-r--r-- 1 boinc boinc    16551 Jun 28 07:01 start_atlas.sh
[2021-06-28 07:23:23] -rw-r--r-- 1 boinc boinc   330778 Jun 28 07:01 input.tar.gz
[2021-06-28 07:23:23] -rw-r--r-- 1 boinc boinc 37658468 Jun 28 07:01 ATLAS.root_0
[2021-06-28 07:23:23] -rw------- 1 boinc boinc  2043605 Jun 28 07:21 HITS.pool.root.1
[2021-06-28 07:23:23] -rw------- 1 boinc boinc  2539520 Jun 28 07:23 result.tar.gz
07:23:24 (2007357): run_atlas exited; CPU time 480.862757
07:23:24 (2007357): called boinc_finish(0)

</stderr_txt>
]]>


©2024 CERN