| Name | 17gLDm3R5Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmuSFKDmXpEIHo_0 |
| Workunit | 2096838 |
| Created | 28 Jun 2021, 12:24:48 UTC |
| Sent | 28 Jun 2021, 12:25:49 UTC |
| Report deadline | 5 Jul 2021, 12:25:49 UTC |
| Received | 28 Jun 2021, 14:58:10 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3815 |
| Run time | 20 min 22 sec |
| CPU time | 7 min 25 sec |
| Validate state | Valid |
| Credit | 48.09 |
| Device peak FLOPS | 16.99 GFLOPS |
| Application version | ATLAS Simulation v1.04 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.50 GB |
| Peak swap size | 2.14 GB |
| Peak disk usage | 85.30 MB |
Stderr output
<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
10:32:14 (2029678): wrapper (7.7.26015): starting
10:32:14 (2029678): wrapper: running run_atlas (--nthreads 3)
[2021-06-28 10:32:14] Arguments: --nthreads 3
[2021-06-28 10:32:14] Threads: 3
[2021-06-28 10:32:14] Checking for CVMFS
[2021-06-28 10:32:16] Probing /cvmfs/atlas.cern.ch... OK
[2021-06-28 10:32:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-06-28 10:32:17] Running cvmfs_config stat atlas.cern.ch
[2021-06-28 10:32:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-06-28 10:32:17] 2.8.1.0 2029894 0 24464 87372 3 1 2192284 4194304 0 130560 0 0 0.000 528 1113 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2021-06-28 10:32:17] CVMFS is ok
[2021-06-28 10:32:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-06-28 10:32:17] Small home clusters do not require a local http proxy but it is suggested if
[2021-06-28 10:32:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2021-06-28 10:32:17] Further information can be found at the LHC@home message board.
[2021-06-28 10:32:17] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-06-28 10:32:17] Checking for singularity binary...
[2021-06-28 10:32:17] Using singularity found in PATH at /usr/local/bin/singularity
[2021-06-28 10:32:17] Running /usr/local/bin/singularity --version
[2021-06-28 10:32:17] singularity-ce version 3.8.0-rc.1+105-g86d212c09
[2021-06-28 10:32:17] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-06-28 10:32:17] HP600-1
[2021-06-28 10:32:17] Singularity works
[2021-06-28 10:32:17] Set ATHENA_PROC_NUMBER=3
[2021-06-28 10:32:17] Starting ATLAS job with PandaID=5102328272
[2021-06-28 10:32:17] Running command: /usr/local/bin/singularity exec --pwd /var/lib/boinc-client/slots/2 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-06-28 10:52:34] *** The last 200 lines of the pilot log: ***
[2021-06-28 10:52:34] "cpuUnit": "seconds",
[2021-06-28 10:52:34] "externalsCpuTime": 25,
[2021-06-28 10:52:34] "memUnit": "kB",
[2021-06-28 10:52:34] "transformCpuTime": 3,
[2021-06-28 10:52:34] "wallTime": 1073
[2021-06-28 10:52:34] }
[2021-06-28 10:52:34] }
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | DEBUG | queue_monitor | pilot.user.atlas.common | update_server | no need to update logstash for this job
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | state=finished
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=running
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | DEBUG | queue_monitor | pilot.control.job | get_proper_state | serverstate=finished
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | INFO | queue_monitor | pilot.control.job | send_state | pilot will not update the server (heartbeat message will be written to file)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | INFO | queue_monitor | pilot.control.job | send_state | job 5102328272 has finished - writing final server update
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | job definition core count: 3
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | WARNING | queue_monitor | pilot.user.atlas.common | get_executor_dictionary | no such key: executor
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | WARNING | queue_monitor | pilot.user.atlas.common | get_executor_dictionary | no such key: executor
[2021-06-28 10:52:34] 2021-06-28 14:51:38,784 | INFO | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics_string | will not add max space = -28634209 B to job metrics
[2021-06-28 10:52:34] 2021-06-28 14:51:38,785 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
[2021-06-28 10:52:34] 2021-06-28 14:51:38,785 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
[2021-06-28 10:52:34] 2021-06-28 14:51:38,785 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -914.20 B/s (using 11 data points, chi2=3535905)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,785 | DEBUG | queue_monitor | pilot.user.atlas.jobmetrics | get_job_metrics | job metrics="actualCoreCount=2 nEvents=2 leak=-914.20 chi2=3535905"
[2021-06-28 10:52:34] 2021-06-28 14:51:38,785 | INFO | queue_monitor | pilot.control.job | get_data_structure | mean actualcorecount: 2.533333
[2021-06-28 10:52:34] 2021-06-28 14:51:38,785 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 2 (read)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,803 | INFO | queue_monitor | pilot.util.container | execute | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2021-06-28 10:52:34] 2021-06-28 14:51:38,819 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-5102328272/memory_monito
[2021-06-28 10:52:34] 2021-06-28 14:51:38,820 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Avg': {'nprocs': 4.5, 'nthreads': 5.333, 'pss': 667578.0,
[2021-06-28 10:52:34] 2021-06-28 14:51:38,820 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | ..............................
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . Timing measurements:
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . get job = 0 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . initial setup = 0 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload setup = 42 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . total setup = 42 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-in = 0 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . payload execution = 1086 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | . stage-out = 0 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | INFO | queue_monitor | pilot.util.timing | timing_report | ..............................
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | DEBUG | queue_monitor | pilot.control.job | send_state | is_harvester_mode(args) : False
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'jobId': '5102328272', 'state': 'finished', 'timestamp'
[2021-06-28 10:52:34] 2021-06-28 14:51:38,821 | DEBUG | queue_monitor | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file /var/lib/boinc-client/slots/2/heartbeat.json
[2021-06-28 10:52:34] 2021-06-28 14:51:38,822 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | job 5102328272 was dequeued from the monitored payloads queue
[2021-06-28 10:52:34] 2021-06-28 14:51:38,878 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | tmp job object deleted
[2021-06-28 10:52:34] 2021-06-28 14:51:38,878 | INFO | retrieve | pilot.control.job | make_job_report |
[2021-06-28 10:52:34] 2021-06-28 14:51:38,878 | INFO | retrieve | pilot.control.job | make_job_report | job summary report
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | --------------------------------------------------
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | PanDA job id: 5102328272
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | task id: NULL
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | errors: (none)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | pilot state: finished
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | transexitcode: 0
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | exeerrorcode: 0
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | exeerrordiag:
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | exitcode: 0
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | exitmsg: OK
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | cpuconsumptiontime: 453 s
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | nevents: 2
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | neventsw: 0
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | pid: 2037897
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | pgrp: 2037897
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | corecount: 3
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | event service: False
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | sizes: {18664555: 3856465, 18664566: 3856351, 18665698: 3886352, 18665700: 389
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report | --------------------------------------------------
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.control.job | make_job_report |
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | DEBUG | retrieve | pilot.control.job | has_job_completed | ls -lF /var/lib/boinc-client/slots/2:
[2021-06-28 10:52:34]
[2021-06-28 10:52:34] 2021-06-28 14:51:38,879 | INFO | retrieve | pilot.util.container | execute | executing command: ls -lF /var/lib/boinc-client/slots/2
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | DEBUG | retrieve | pilot.control.job | has_job_completed | total 46652
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 195049 Jun 28 10:51 09a5b46f-d473-4cfc-a116-69b8b2ee6f97_23662.1.job.log
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 461329 Jun 28 10:51 09a5b46f-d473-4cfc-a116-69b8b2ee6f97_23662.1.job.log.tgz
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 130 Jun 28 10:32 17gLDm3R5Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmuSFKDmXpEIHo.diag
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 1060172 Jun 28 10:32 agis_schedconf.cvmfs.json
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 0 Jun 28 10:32 boinc_lockfile
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 8192 Jun 28 10:51 boinc_mmap_file
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 532 Jun 28 10:45 boinc_task_state.xml
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 1962838 Jun 28 10:32 cric_ddmendpoints.json
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 37224345 Jun 28 10:32 EVNT.04972714._000026.pool.root.1
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 7075 Jun 28 10:51 heartbeat.json
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 8875 Jun 28 10:32 init_data.xml
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 330772 Jun 28 10:32 input.tar.gz
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 112 Jun 28 10:32 job.xml
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 1012 Jun 28 10:51 memory_monitor_summary.json
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 5881145 Jun 28 10:51 output.1.09a5b46f-d473-4cfc-a116-69b8b2ee6f97_23662.pool.root
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 536 Jun 28 10:51 output.list
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 2650 Jun 28 10:32 pandaJob.out
[2021-06-28 10:52:34] drwxrwx--- 3 boinc boinc 4096 Jun 28 10:51 PanDA_Pilot-5102328272/
[2021-06-28 10:52:34] drwx------ 4 boinc boinc 4096 Jun 28 10:32 pilot2/
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 320775 Jun 28 07:23 pilot2.tar.gz
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 174814 Jun 28 10:51 pilotlog.txt
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 3209 Jun 28 08:24 queuedata.json
[2021-06-28 10:52:34] -rwxr-xr-x 1 boinc boinc 6966 Jun 28 10:32 run_atlas*
[2021-06-28 10:52:34] -rwx------ 1 boinc boinc 20456 Jun 28 08:21 runpilot2-wrapper.sh*
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 407 Jun 28 10:32 runtime_log
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 5560 Jun 28 10:32 runtime_log.err
[2021-06-28 10:52:34] drwxrwx--x 2 boinc boinc 4096 Jun 28 10:32 shared/
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 16551 Jun 28 10:32 start_atlas.sh
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 2134 Jun 28 10:32 stderr.txt
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 107 Jun 28 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 25 Jun 28 10:51 wrapper_checkpoint.txt
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue jobs has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue payloads has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_in has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue data_out has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue current_data_in has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_jobs has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,896 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue validated_payloads has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue monitored_payloads has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_jobs has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_payloads has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_in has 1 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue finished_data_out has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_jobs has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_payloads has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_in has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue failed_data_out has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobs has 0 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.control.job | has_job_completed | job 5102328272 has completed (purged errors)
[2021-06-28 10:52:34] 2021-06-28 14:51:38,897 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
[2021-06-28 10:52:34] 2021-06-28 14:51:38,899 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc-client/slots/2/PanDA_Pilot-51023282
[2021-06-28 10:52:34] 2021-06-28 14:51:39,904 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [2037897]
[2021-06-28 10:52:34] 2021-06-28 14:51:39,904 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 2037897
[2021-06-28 10:52:34] 2021-06-28 14:51:39,904 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
[2021-06-28 10:52:34] 2021-06-28 14:51:40,909 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
[2021-06-28 10:52:34] 2021-06-28 14:51:40,909 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=2037897
[2021-06-28 10:52:34] 2021-06-28 14:51:40,950 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [2037897] (in reverse order)
[2021-06-28 10:52:34] 2021-06-28 14:51:40,984 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
[2021-06-28 10:52:34] 2021-06-28 14:51:40,984 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
[2021-06-28 10:52:34] 2021-06-28 14:51:40,984 | DEBUG | retrieve | pilot.util.queuehandling | purge_queue | queue purged
[2021-06-28 10:52:34] 2021-06-28 14:51:40,984 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
[2021-06-28 10:52:34] 2021-06-28 14:51:40,984 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
[2021-06-28 10:52:34] 2021-06-28 14:51:40,985 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
[2021-06-28 10:52:34] 2021-06-28 14:51:40,985 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.11.2 (22) ***
[2021-06-28 10:52:34] 2021-06-28 14:51:40,985 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
[2021-06-28 10:52:34] 2021-06-28 14:51:40,985 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
[2021-06-28 10:52:34] 2021-06-28 14:51:41,003 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
[2021-06-28 10:52:34] 2021-06-28 14:51:41,068 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
[2021-06-28 10:52:34] LSB Version: :core-4.1-amd64:core-4.1-noarch
[2021-06-28 10:52:34] Distributor ID: CentOS
[2021-06-28 10:52:34] Description: CentOS Linux release 7.8.2003 (Core)
[2021-06-28 10:52:34] Release: 7.8.2003
[2021-06-28 10:52:34] Codename: Core
[2021-06-28 10:52:34] 2021-06-28 14:51:41,069 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *****************************************
[2021-06-28 10:52:34] 2021-06-28 14:51:41,571 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/2
[2021-06-28 10:52:34] 2021-06-28 14:51:41,584 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (71072481280 B)
[2021-06-28 10:52:34] 2021-06-28 14:51:41,584 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
[2021-06-28 10:52:34] 2021-06-28 14:51:41,585 | DEBUG | retrieve | pilot.control.job | retrieve | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:41,585 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:41,585 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
[2021-06-28 10:52:34] 2021-06-28 14:51:41,659 | DEBUG | execute_payloads | pilot.control.payload | execute_payloads | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:41,659 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:41,756 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
[2021-06-28 10:52:34] 2021-06-28 14:51:41,756 | DEBUG | job | pilot.control.job | control | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:41,756 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:41,829 | DEBUG | validate | pilot.control.job | validate | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:41,829 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:41,832 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
[2021-06-28 10:52:34] 2021-06-28 14:51:41,832 | DEBUG | data | pilot.control.data | control | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:41,832 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:41,909 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
[2021-06-28 10:52:34] 2021-06-28 14:51:42,003 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:42,003 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:42,059 | DEBUG | validate_pre | pilot.control.payload | validate_pre | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:42,059 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:42,218 | DEBUG | validate_post | pilot.control.payload | validate_post | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:42,219 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:42,299 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
[2021-06-28 10:52:34] 2021-06-28 14:51:42,299 | DEBUG | payload | pilot.control.payload | control | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:42,299 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:42,339 | DEBUG | copytool_in | pilot.control.data | copytool_in | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:42,339 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:42,585 | DEBUG | copytool_out | pilot.control.data | copytool_out | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:42,585 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:42,775 | DEBUG | failed_post | pilot.control.payload | failed_post | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:42,775 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:42,779 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
[2021-06-28 10:52:34] 2021-06-28 14:51:43,887 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
[2021-06-28 10:52:34] 2021-06-28 14:51:43,887 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:43,887 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:51:45,780 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | will not set job_aborted yet
[2021-06-28 10:52:34] 2021-06-28 14:51:45,780 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:52:33,538 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
[2021-06-28 10:52:34] 2021-06-28 14:52:33,539 | DEBUG | job_monitor | pilot.util.processes | threads_aborted | aborting since the last relevant thread is about to finish
[2021-06-28 10:52:34] 2021-06-28 14:52:33,539 | DEBUG | job_monitor | pilot.control.job | job_monitor | will proceed to set job_aborted
[2021-06-28 10:52:34] 2021-06-28 14:52:33,539 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
[2021-06-28 10:52:34] 2021-06-28 14:52:34,448 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
[2021-06-28 10:52:34] 2021-06-28 14:52:34,448 | INFO | MainThread | root | wrap_up | traces error code: 0
[2021-06-28 10:52:34] 2021-06-28 14:52:34,448 | INFO | MainThread | root | wrap_up | pilot has finished
[2021-06-28 10:52:34] 2021-06-28 14:52:34,487 [wrapper] ==== pilot stdout END ====
[2021-06-28 10:52:34] 2021-06-28 14:52:34,491 [wrapper] ==== wrapper stdout RESUME ====
[2021-06-28 10:52:34] 2021-06-28 14:52:34,495 [wrapper] Pilot exit status: 0
[2021-06-28 10:52:34] 2021-06-28 14:52:34,507 [wrapper] pandaids: 5102328272
[2021-06-28 10:52:34] 2021-06-28 14:52:34,514 [wrapper] apfmon messages muted
[2021-06-28 10:52:34] 2021-06-28 14:52:34,519 [wrapper] Test setup, not cleaning
[2021-06-28 10:52:34] 2021-06-28 14:52:34,523 [wrapper] ==== wrapper stdout END ====
[2021-06-28 10:52:34] 2021-06-28 14:52:34,527 [wrapper] ==== wrapper stderr END ====
[2021-06-28 10:52:34] 2021-06-28 14:52:34,535 [wrapper] wrapperexiting ec=0, duration=1217
[2021-06-28 10:52:34] 2021-06-28 14:52:34,539 [wrapper] apfmon messages muted
[2021-06-28 10:52:34] *** Error codes and diagnostics ***
[2021-06-28 10:52:34] "exeErrorCode": 0,
[2021-06-28 10:52:34] "exeErrorDiag": "",
[2021-06-28 10:52:34] "pilotErrorCode": 0,
[2021-06-28 10:52:34] "pilotErrorDiag": "",
[2021-06-28 10:52:34] *** Listing of results directory ***
[2021-06-28 10:52:34] total 52956
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 320775 Jun 28 07:23 pilot2.tar.gz
[2021-06-28 10:52:34] -rwx------ 1 boinc boinc 20456 Jun 28 08:21 runpilot2-wrapper.sh
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 3209 Jun 28 08:24 queuedata.json
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 107 Jun 28 10:32 wrapper_26015_x86_64-pc-linux-gnu
[2021-06-28 10:52:34] -rwxr-xr-x 1 boinc boinc 6966 Jun 28 10:32 run_atlas
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 112 Jun 28 10:32 job.xml
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 8875 Jun 28 10:32 init_data.xml
[2021-06-28 10:52:34] drwxrwx--x 2 boinc boinc 4096 Jun 28 10:32 shared
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 0 Jun 28 10:32 boinc_lockfile
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 16551 Jun 28 10:32 start_atlas.sh
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 330772 Jun 28 10:32 input.tar.gz
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 37224345 Jun 28 10:32 EVNT.04972714._000026.pool.root.1
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 2650 Jun 28 10:32 pandaJob.out
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 1060172 Jun 28 10:32 agis_schedconf.cvmfs.json
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 1962838 Jun 28 10:32 cric_ddmendpoints.json
[2021-06-28 10:52:34] drwx------ 4 boinc boinc 4096 Jun 28 10:32 pilot2
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 532 Jun 28 10:45 boinc_task_state.xml
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 5881145 Jun 28 10:51 output.1.09a5b46f-d473-4cfc-a116-69b8b2ee6f97_23662.pool.root
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 1012 Jun 28 10:51 memory_monitor_summary.json
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 461329 Jun 28 10:51 09a5b46f-d473-4cfc-a116-69b8b2ee6f97_23662.1.job.log.tgz
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 7075 Jun 28 10:51 heartbeat.json
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 8192 Jun 28 10:52 boinc_mmap_file
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 25 Jun 28 10:52 wrapper_checkpoint.txt
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 8510 Jun 28 10:52 pilotlog.txt
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 211600 Jun 28 10:52 09a5b46f-d473-4cfc-a116-69b8b2ee6f97_23662.1.job.log
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 536 Jun 28 10:52 output.list
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 9541 Jun 28 10:52 runtime_log.err
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 748 Jun 28 10:52 runtime_log
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 6574080 Jun 28 10:52 result.tar.gz
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 560 Jun 28 10:52 17gLDm3R5Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmuSFKDmXpEIHo.diag
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 33054 Jun 28 10:52 stderr.txt
[2021-06-28 10:52:34] HITS file was successfully produced:
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 5881145 Jun 28 10:51 shared/HITS.pool.root.1
[2021-06-28 10:52:34] *** Contents of shared directory: ***
[2021-06-28 10:52:34] total 48860
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 37224345 Jun 28 10:32 ATLAS.root_0
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 16551 Jun 28 10:32 start_atlas.sh
[2021-06-28 10:52:34] -rw-r--r-- 1 boinc boinc 330772 Jun 28 10:32 input.tar.gz
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 5881145 Jun 28 10:51 HITS.pool.root.1
[2021-06-28 10:52:34] -rw------- 1 boinc boinc 6574080 Jun 28 10:52 result.tar.gz
10:52:35 (2029678): run_atlas exited; CPU time 445.926771
10:52:35 (2029678): called boinc_finish(0)
</stderr_txt>
]]>
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