Name MvMODmHv5Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmvSFKDmU5xH1n_0
Workunit 2096855
Created 28 Jun 2021, 12:52:08 UTC
Sent 28 Jun 2021, 12:52:44 UTC
Report deadline 5 Jul 2021, 12:52:44 UTC
Received 28 Jun 2021, 17:25:19 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 3815
Run time 11 min 1 sec
CPU time 4 min 26 sec
Validate state Valid
Credit 26.03
Device peak FLOPS 16.99 GFLOPS
Application version ATLAS Simulation v1.04 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.50 GB
Peak swap size 2.12 GB
Peak disk usage 78.48 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
12:14:01 (2076274): wrapper (7.7.26015): starting
12:14:01 (2076274): wrapper: running run_atlas (--nthreads 3)
[2021-06-28 12:14:01] Arguments: --nthreads 3
[2021-06-28 12:14:01] Threads: 3
[2021-06-28 12:14:01] Checking for CVMFS
[2021-06-28 12:14:02] Probing /cvmfs/atlas.cern.ch... OK
[2021-06-28 12:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-06-28 12:14:03] Running cvmfs_config stat atlas.cern.ch
[2021-06-28 12:14:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-06-28 12:14:03] 2.8.1.0 2076407 0 24692 87375 3 1 3449688 4194304 0 130560 0 0 0.000 528 1257 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2021-06-28 12:14:03] CVMFS is ok
[2021-06-28 12:14:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-06-28 12:14:03] Small home clusters do not require a local http proxy but it is suggested if
[2021-06-28 12:14:03] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2021-06-28 12:14:03] Further information can be found at the LHC@home message board.
[2021-06-28 12:14:03] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-06-28 12:14:03] Checking for singularity binary...
[2021-06-28 12:14:03] Using singularity found in PATH at /usr/local/bin/singularity
[2021-06-28 12:14:03] Running /usr/local/bin/singularity --version
[2021-06-28 12:14:03] singularity-ce version 3.8.0-rc.1+105-g86d212c09
[2021-06-28 12:14:03] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-06-28 12:14:04] HP600-1
[2021-06-28 12:14:04] Singularity works
[2021-06-28 12:14:04] Set ATHENA_PROC_NUMBER=3
[2021-06-28 12:14:04] Starting ATLAS job with PandaID=5102340541
[2021-06-28 12:14:04] Running command: /usr/local/bin/singularity exec --pwd /var/lib/boinc-client/slots/5 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-06-28 12:25:00]  *** The last 200 lines of the pilot log: ***
[2021-06-28 12:25:00]       "cpuTime": 3, 
[2021-06-28 12:25:00]       "cpuTimeTotal": 255, 
[2021-06-28 12:25:00]       "externalCpuTime": 1, 
[2021-06-28 12:25:00]       "processedEvents": 2, 
[2021-06-28 12:25:00]       "trfPredata": null, 
[2021-06-28 12:25:00]       "wallTime": 551
[2021-06-28 12:25:00]     }
[2021-06-28 12:25:00]   }
[2021-06-28 12:25:00] }
[2021-06-28 12:25:00] 2021-06-28 16:24:49,601 | DEBUG    | queue_monitor       | pilot.user.atlas.common          | update_server             | no need to update logstash for this job
[2021-06-28 12:25:00] 2021-06-28 16:24:49,601 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | state=finished
[2021-06-28 12:25:00] 2021-06-28 16:24:49,601 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=running
[2021-06-28 12:25:00] 2021-06-28 16:24:49,601 | DEBUG    | queue_monitor       | pilot.control.job                | get_proper_state          | serverstate=finished
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | INFO     | queue_monitor       | pilot.control.job                | send_state                | pilot will not update the server (heartbeat message will be written to file)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | INFO     | queue_monitor       | pilot.control.job                | send_state                | job 5102340541 has finished - writing final server update
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | DEBUG    | queue_monitor       | pilot.user.atlas.jobmetrics      | get_job_metrics_string    | job definition core count: 3
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | INFO     | queue_monitor       | pilot.user.atlas.jobmetrics      | get_job_metrics_string    | will not add max space = -36778435 B to job metrics
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | DEBUG    | queue_monitor       | pilot.api.analytics              | get_fitted_data           | removing tails from data to be fitted
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | WARNING  | queue_monitor       | pilot.api.analytics              | get_fitted_data           | wrong length of table data, x=[1624897194.0, 1624897255.0, 1624897316.0], y=[1
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | DEBUG    | queue_monitor       | pilot.user.atlas.jobmetrics      | get_job_metrics           | job metrics="actualCoreCount=3 nEvents=2 dbTime=102.14 dbData=4274626"
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | INFO     | queue_monitor       | pilot.control.job                | get_data_structure        | mean actualcorecount: 2.625000
[2021-06-28 12:25:00] 2021-06-28 16:24:49,602 | INFO     | queue_monitor       | pilot.control.job                | get_data_structure        | total number of processed events: 2 (read)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,619 | INFO     | queue_monitor       | pilot.util.container             | execute                   | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2021-06-28 12:25:00] 2021-06-28 16:24:49,634 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_values         | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-5102340541/memory_monito
[2021-06-28 12:25:00] 2021-06-28 16:24:49,634 | DEBUG    | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Avg': {'nprocs': 4.799, 'nthreads': 5.7, 'pss': 1078077.0
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from prmon json
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from prmon json
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | ..............................
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . Timing measurements:
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . get job = 0 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . initial setup = 0 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . payload setup = 8 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . total setup = 8 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . stage-in = 0 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . payload execution = 603 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | . stage-out = 0 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | INFO     | queue_monitor       | pilot.util.timing                | timing_report             | ..............................
[2021-06-28 12:25:00] 2021-06-28 16:24:49,635 | DEBUG    | queue_monitor       | pilot.control.job                | send_state                | is_harvester_mode(args) : False
[2021-06-28 12:25:00] 2021-06-28 16:24:49,636 | DEBUG    | queue_monitor       | pilot.control.job                | write_heartbeat_to_file   | heartbeat dictionary: {'jobId': '5102340541', 'state': 'finished', 'timestamp'
[2021-06-28 12:25:00] 2021-06-28 16:24:49,636 | DEBUG    | queue_monitor       | pilot.control.job                | write_heartbeat_to_file   | wrote heartbeat to file /var/lib/boinc-client/slots/5/heartbeat.json
[2021-06-28 12:25:00] 2021-06-28 16:24:49,636 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | job 5102340541 was dequeued from the monitored payloads queue
[2021-06-28 12:25:00] 2021-06-28 16:24:49,692 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | tmp job object deleted
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | 
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | job summary report
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | --------------------------------------------------
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | PanDA job id: 5102340541
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | task id: NULL
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | errors: (none)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | status: LOG_TRANSFER = DONE 
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | pilot state: finished 
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | transexitcode: 0
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exeerrorcode: 0
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exeerrordiag: 
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exitcode: 0
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | exitmsg: OK
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | cpuconsumptiontime: 270 s
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | nevents: 2
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | neventsw: 0
[2021-06-28 12:25:00] 2021-06-28 16:24:49,705 | INFO     | retrieve            | pilot.control.job                | make_job_report           | pid: 2084103
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | INFO     | retrieve            | pilot.control.job                | make_job_report           | pgrp: 2084103
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | INFO     | retrieve            | pilot.control.job                | make_job_report           | corecount: 3
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | INFO     | retrieve            | pilot.control.job                | make_job_report           | event service: False
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | INFO     | retrieve            | pilot.control.job                | make_job_report           | sizes: {18670665: 3856181, 18670666: 3856516, 18670676: 3856402, 18671292: 389
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | INFO     | retrieve            | pilot.control.job                | make_job_report           | --------------------------------------------------
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | INFO     | retrieve            | pilot.control.job                | make_job_report           | 
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | DEBUG    | retrieve            | pilot.control.job                | has_job_completed         | ls -lF /var/lib/boinc-client/slots/5:
[2021-06-28 12:25:00] 
[2021-06-28 12:25:00] 2021-06-28 16:24:49,706 | INFO     | retrieve            | pilot.util.container             | execute                   | executing command: ls -lF /var/lib/boinc-client/slots/5
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | DEBUG    | retrieve            | pilot.control.job                | has_job_completed         | total 42360
[2021-06-28 12:25:00] -rw------- 1 boinc boinc  1060175 Jun 28 12:14 agis_schedconf.cvmfs.json
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc        0 Jun 28 12:14 boinc_lockfile
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     8192 Jun 28 12:24 boinc_mmap_file
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      532 Jun 28 12:24 boinc_task_state.xml
[2021-06-28 12:25:00] -rw------- 1 boinc boinc   156225 Jun 28 12:24 cfb27375-23a3-4cbf-93ae-668ccfe7ac5f_3654.job.log
[2021-06-28 12:25:00] -rw------- 1 boinc boinc   258495 Jun 28 12:24 cfb27375-23a3-4cbf-93ae-668ccfe7ac5f_3654.job.log.tgz
[2021-06-28 12:25:00] -rw------- 1 boinc boinc  1962838 Jun 28 12:14 cric_ddmendpoints.json
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc 37727106 Jun 28 12:14 EVNT.04972714._000037.pool.root.1
[2021-06-28 12:25:00] -rw------- 1 boinc boinc     6586 Jun 28 12:24 heartbeat.json
[2021-06-28 12:25:00] -rw------- 1 boinc boinc  1257626 Jun 28 12:23 Hits.hc_20204040.BOINC-TEST.cfb27375-23a3-4cbf-93ae-668ccfe7ac5f_3654.HITS.pool.root
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     8875 Jun 28 12:14 init_data.xml
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc   330781 Jun 28 12:14 input.tar.gz
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      112 Jun 28 12:14 job.xml
[2021-06-28 12:25:00] -rw------- 1 boinc boinc     1005 Jun 28 12:24 memory_monitor_summary.json
[2021-06-28 12:25:00] -rw------- 1 boinc boinc      130 Jun 28 12:14 MvMODmHv5Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmvSFKDmU5xH1n.diag
[2021-06-28 12:25:00] -rw------- 1 boinc boinc      576 Jun 28 12:24 output.list
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     2655 Jun 28 12:14 pandaJob.out
[2021-06-28 12:25:00] drwxrwx--- 2 boinc boinc     4096 Jun 28 12:24 PanDA_Pilot-5102340541/
[2021-06-28 12:25:00] drwx------ 4 boinc boinc     4096 Jun 28 12:14 pilot2/
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc   320775 Jun 28 08:28 pilot2.tar.gz
[2021-06-28 12:25:00] -rw------- 1 boinc boinc   135990 Jun 28 12:24 pilotlog.txt
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     3209 Jun 28 08:52 queuedata.json
[2021-06-28 12:25:00] -rwxr-xr-x 1 boinc boinc     6966 Jun 28 12:14 run_atlas*
[2021-06-28 12:25:00] -rwx------ 1 boinc boinc    20456 Jun 28 08:52 runpilot2-wrapper.sh*
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      407 Jun 28 12:14 runtime_log
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     5554 Jun 28 12:14 runtime_log.err
[2021-06-28 12:25:00] drwxrwx--x 2 boinc boinc     4096 Jun 28 12:14 shared/
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc    16539 Jun 28 12:14 start_atlas.sh
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     2135 Jun 28 12:14 stderr.txt
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      107 Jun 28 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc       24 Jun 28 12:24 wrapper_checkpoint.txt
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue jobs has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue payloads has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_in has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue data_out has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue current_data_in has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_jobs has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue validated_payloads has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue monitored_payloads has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_jobs has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_payloads has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_in has 1 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue finished_data_out has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_jobs has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_payloads has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,722 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_in has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,723 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue failed_data_out has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,723 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobs has 0 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,723 | INFO     | retrieve            | pilot.util.queuehandling         | queue_report              | queue completed_jobids has 1 job(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,723 | INFO     | retrieve            | pilot.control.job                | has_job_completed         | job 5102340541 has completed (purged errors)
[2021-06-28 12:25:00] 2021-06-28 16:24:49,723 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | overall cleanup function is called
[2021-06-28 12:25:00] 2021-06-28 16:24:49,723 | DEBUG    | retrieve            | pilot.util.processes             | cleanup                   | work directory was removed: /var/lib/boinc-client/slots/5/PanDA_Pilot-51023405
[2021-06-28 12:25:00] 2021-06-28 16:24:50,728 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [2084103]
[2021-06-28 12:25:00] 2021-06-28 16:24:50,728 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 2084103
[2021-06-28 12:25:00] 2021-06-28 16:24:50,728 | INFO     | retrieve            | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
[2021-06-28 12:25:00] 2021-06-28 16:24:51,733 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | collected zombie processes
[2021-06-28 12:25:00] 2021-06-28 16:24:51,733 | INFO     | retrieve            | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=2084103
[2021-06-28 12:25:00] 2021-06-28 16:24:51,773 | INFO     | retrieve            | pilot.util.processes             | kill_processes            | process IDs to be killed: [2084103] (in reverse order)
[2021-06-28 12:25:00] 2021-06-28 16:24:51,802 | WARNING  | retrieve            | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | INFO     | retrieve            | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | DEBUG    | retrieve            | pilot.util.queuehandling         | purge_queue               | queue purged
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | INFO     | retrieve            | pilot.control.job                | retrieve                  | ready for new job
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | INFO     | retrieve            | root                             | retrieve                  | pilot has finished for previous job - re-establishing logging
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | *****************************************
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | ***  PanDA Pilot version 2.11.2 (22)  ***
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | *****************************************
[2021-06-28 12:25:00] 2021-06-28 16:24:51,803 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | 
[2021-06-28 12:25:00] 2021-06-28 16:24:51,823 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | architecture information:
[2021-06-28 12:25:00] 2021-06-28 16:24:51,891 | INFO     | retrieve            | pilot.util.auxiliary             | display_architecture_info | 
[2021-06-28 12:25:00] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2021-06-28 12:25:00] Distributor ID:	CentOS
[2021-06-28 12:25:00] Description:	CentOS Linux release 7.8.2003 (Core)
[2021-06-28 12:25:00] Release:	7.8.2003
[2021-06-28 12:25:00] Codename:	Core
[2021-06-28 12:25:00] 2021-06-28 16:24:51,891 | INFO     | retrieve            | pilot.util.auxiliary             | pilot_version_banner      | *****************************************
[2021-06-28 12:25:00] 2021-06-28 16:24:52,394 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc-client/slots/5
[2021-06-28 12:25:00] 2021-06-28 16:24:52,407 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (70523027456 B)
[2021-06-28 12:25:00] 2021-06-28 16:24:52,407 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
[2021-06-28 12:25:00] 2021-06-28 16:24:52,407 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:52,407 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
[2021-06-28 12:25:00] 2021-06-28 16:24:52,407 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:52,407 | WARNING  | monitor             | pilot.control.monitor            | control                   | aborting monitor loop since graceful_stop has been set
[2021-06-28 12:25:00] 2021-06-28 16:24:52,408 | INFO     | monitor             | pilot.control.monitor            | control                   | [monitor] control thread has ended
[2021-06-28 12:25:00] 2021-06-28 16:24:52,594 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
[2021-06-28 12:25:00] 2021-06-28 16:24:52,594 | DEBUG    | payload             | pilot.control.payload            | control                   | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:52,594 | DEBUG    | payload             | pilot.control.payload            | control                   | [payload] control thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:52,612 | DEBUG    | execute_payloads    | pilot.control.payload            | execute_payloads          | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:52,612 | INFO     | execute_payloads    | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:52,627 | DEBUG    | failed_post         | pilot.control.payload            | failed_post               | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:52,627 | INFO     | failed_post         | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:52,803 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
[2021-06-28 12:25:00] 2021-06-28 16:24:52,803 | DEBUG    | data                | pilot.control.data               | control                   | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:52,803 | DEBUG    | data                | pilot.control.data               | control                   | [data] control thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:52,815 | DEBUG    | validate            | pilot.control.job                | validate                  | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:52,815 | DEBUG    | validate            | pilot.control.job                | validate                  | [job] validate thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:52,920 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:52,920 | DEBUG    | create_data_payload | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:53,031 | DEBUG    | validate_pre        | pilot.control.payload            | validate_pre              | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:53,031 | INFO     | validate_pre        | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:53,148 | DEBUG    | validate_post       | pilot.control.payload            | validate_post             | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:53,148 | INFO     | validate_post       | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:53,287 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:53,287 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:53,408 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:53,408 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:53,417 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
[2021-06-28 12:25:00] 2021-06-28 16:24:53,418 | DEBUG    | job                 | pilot.control.job                | control                   | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:53,418 | DEBUG    | job                 | pilot.control.job                | control                   | [job] control thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:54,699 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
[2021-06-28 12:25:00] 2021-06-28 16:24:54,699 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:54,699 | DEBUG    | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:55,606 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
[2021-06-28 12:25:00] 2021-06-28 16:24:58,606 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | will not set job_aborted yet
[2021-06-28 12:25:00] 2021-06-28 16:24:58,607 | DEBUG    | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:24:59,459 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
[2021-06-28 12:25:00] 2021-06-28 16:24:59,459 | DEBUG    | job_monitor         | pilot.util.processes             | threads_aborted           | aborting since the last relevant thread is about to finish
[2021-06-28 12:25:00] 2021-06-28 16:24:59,459 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | will proceed to set job_aborted
[2021-06-28 12:25:00] 2021-06-28 16:24:59,459 | DEBUG    | job_monitor         | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
[2021-06-28 12:25:00] 2021-06-28 16:25:00,333 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
[2021-06-28 12:25:00] 2021-06-28 16:25:00,333 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
[2021-06-28 12:25:00] 2021-06-28 16:25:00,334 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
[2021-06-28 12:25:00] 2021-06-28 16:25:00,373 [wrapper] ==== pilot stdout END ====
[2021-06-28 12:25:00] 2021-06-28 16:25:00,377 [wrapper] ==== wrapper stdout RESUME ====
[2021-06-28 12:25:00] 2021-06-28 16:25:00,381 [wrapper] Pilot exit status: 0
[2021-06-28 12:25:00] 2021-06-28 16:25:00,395 [wrapper] pandaids: 5102340541
[2021-06-28 12:25:00] 2021-06-28 16:25:00,402 [wrapper] apfmon messages muted
[2021-06-28 12:25:00] 2021-06-28 16:25:00,406 [wrapper] Test setup, not cleaning
[2021-06-28 12:25:00] 2021-06-28 16:25:00,409 [wrapper] ==== wrapper stdout END ====
[2021-06-28 12:25:00] 2021-06-28 16:25:00,413 [wrapper] ==== wrapper stderr END ====
[2021-06-28 12:25:00] 2021-06-28 16:25:00,420 [wrapper] wrapperexiting ec=0, duration=656
[2021-06-28 12:25:00] 2021-06-28 16:25:00,424 [wrapper] apfmon messages muted
[2021-06-28 12:25:00]  *** Error codes and diagnostics ***
[2021-06-28 12:25:00]     "exeErrorCode": 0,
[2021-06-28 12:25:00]     "exeErrorDiag": "",
[2021-06-28 12:25:00]     "pilotErrorCode": 0,
[2021-06-28 12:25:00]     "pilotErrorDiag": "",
[2021-06-28 12:25:00]  *** Listing of results directory ***
[2021-06-28 12:25:00] total 42724
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc   320775 Jun 28 08:28 pilot2.tar.gz
[2021-06-28 12:25:00] -rwx------ 1 boinc boinc    20456 Jun 28 08:52 runpilot2-wrapper.sh
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     3209 Jun 28 08:52 queuedata.json
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      107 Jun 28 12:14 wrapper_26015_x86_64-pc-linux-gnu
[2021-06-28 12:25:00] -rwxr-xr-x 1 boinc boinc     6966 Jun 28 12:14 run_atlas
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      112 Jun 28 12:14 job.xml
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     8875 Jun 28 12:14 init_data.xml
[2021-06-28 12:25:00] drwxrwx--x 2 boinc boinc     4096 Jun 28 12:14 shared
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc        0 Jun 28 12:14 boinc_lockfile
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc    16539 Jun 28 12:14 start_atlas.sh
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc   330781 Jun 28 12:14 input.tar.gz
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc 37727106 Jun 28 12:14 EVNT.04972714._000037.pool.root.1
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     2655 Jun 28 12:14 pandaJob.out
[2021-06-28 12:25:00] -rw------- 1 boinc boinc  1060175 Jun 28 12:14 agis_schedconf.cvmfs.json
[2021-06-28 12:25:00] -rw------- 1 boinc boinc  1962838 Jun 28 12:14 cric_ddmendpoints.json
[2021-06-28 12:25:00] drwx------ 4 boinc boinc     4096 Jun 28 12:14 pilot2
[2021-06-28 12:25:00] -rw------- 1 boinc boinc  1257626 Jun 28 12:23 Hits.hc_20204040.BOINC-TEST.cfb27375-23a3-4cbf-93ae-668ccfe7ac5f_3654.HITS.pool.root
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      532 Jun 28 12:24 boinc_task_state.xml
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     8192 Jun 28 12:24 boinc_mmap_file
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc       24 Jun 28 12:24 wrapper_checkpoint.txt
[2021-06-28 12:25:00] -rw------- 1 boinc boinc     1005 Jun 28 12:24 memory_monitor_summary.json
[2021-06-28 12:25:00] -rw------- 1 boinc boinc   258495 Jun 28 12:24 cfb27375-23a3-4cbf-93ae-668ccfe7ac5f_3654.job.log.tgz
[2021-06-28 12:25:00] -rw------- 1 boinc boinc     6586 Jun 28 12:24 heartbeat.json
[2021-06-28 12:25:00] -rw------- 1 boinc boinc     8687 Jun 28 12:25 pilotlog.txt
[2021-06-28 12:25:00] -rw------- 1 boinc boinc   172969 Jun 28 12:25 cfb27375-23a3-4cbf-93ae-668ccfe7ac5f_3654.job.log
[2021-06-28 12:25:00] -rw------- 1 boinc boinc      578 Jun 28 12:25 output.list
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc     9187 Jun 28 12:25 runtime_log.err
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc      677 Jun 28 12:25 runtime_log
[2021-06-28 12:25:00] -rw------- 1 boinc boinc   450560 Jun 28 12:25 result.tar.gz
[2021-06-28 12:25:00] -rw------- 1 boinc boinc      559 Jun 28 12:25 MvMODmHv5Hzn7Olcko1bjSoqABFKDmABFKDmumdXDmvSFKDmU5xH1n.diag
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc    32857 Jun 28 12:25 stderr.txt
[2021-06-28 12:25:00] HITS file was successfully produced:
[2021-06-28 12:25:00] -rw------- 1 boinc boinc 1257626 Jun 28 12:23 shared/HITS.pool.root.1
[2021-06-28 12:25:00]  *** Contents of shared directory: ***
[2021-06-28 12:25:00] total 38860
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc 37727106 Jun 28 12:14 ATLAS.root_0
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc    16539 Jun 28 12:14 start_atlas.sh
[2021-06-28 12:25:00] -rw-r--r-- 1 boinc boinc   330781 Jun 28 12:14 input.tar.gz
[2021-06-28 12:25:00] -rw------- 1 boinc boinc  1257626 Jun 28 12:23 HITS.pool.root.1
[2021-06-28 12:25:00] -rw------- 1 boinc boinc   450560 Jun 28 12:25 result.tar.gz
12:25:01 (2076274): run_atlas exited; CPU time 266.338246
12:25:01 (2076274): called boinc_finish(0)

</stderr_txt>
]]>


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