Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
15:22:28 (49141): wrapper (7.7.26015): starting
15:22:28 (49141): wrapper: running run_atlas (--nthreads 2)
[2021-09-28 15:22:28] Arguments: --nthreads 2
[2021-09-28 15:22:28] Threads: 2
[2021-09-28 15:22:28] Checking for CVMFS
[2021-09-28 15:22:29] Probing /cvmfs/atlas.cern.ch... OK
[2021-09-28 15:22:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-09-28 15:22:29] Running cvmfs_config stat atlas.cern.ch
[2021-09-28 15:22:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-09-28 15:22:31] 2.9.0.0 147949 11120 71248 92996 3 81 2959916 4194305 5949 130560 0 98356585 99.993 810677 914 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 0
[2021-09-28 15:22:31] CVMFS is ok
[2021-09-28 15:22:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-09-28 15:22:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2021-09-28 15:22:31] Small home clusters do not require a local http proxy but it is suggested if
[2021-09-28 15:22:31] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2021-09-28 15:22:31] Further information can be found at the LHC@home message board.
[2021-09-28 15:22:31] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-09-28 15:22:31] Checking for singularity binary...
[2021-09-28 15:22:31] Using singularity found in PATH at /usr/local/bin/singularity
[2021-09-28 15:22:31] Running /usr/local/bin/singularity --version
[2021-09-28 15:22:31] singularity version 3.7.2+10-ga969f0f8c
[2021-09-28 15:22:31] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-09-28 15:22:32] E5-2670
[2021-09-28 15:22:32] Singularity works
[2021-09-28 15:22:33] Set ATHENA_PROC_NUMBER=2
[2021-09-28 15:22:33] Starting ATLAS job with PandaID=5204692306
[2021-09-28 15:22:33] Running command: /usr/local/bin/singularity exec --pwd /var/lib/boinc-client/slots/10 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-09-28 16:34:13]  *** The last 200 lines of the pilot log: ***
[2021-09-28 16:34:14]  filesize=2076648
[2021-09-28 16:34:14]  filetype=output
[2021-09-28 16:34:14]  guid=89345578-37A4-914A-9D2A-9D006889BCD5
[2021-09-28 16:34:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2021-09-28 16:34:14]  is_tar=False
[2021-09-28 16:34:14]  lfn=output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root
[2021-09-28 16:34:14]  mtime=0
[2021-09-28 16:34:14]  protocol_id=None
[2021-09-28 16:34:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}, {'endpoint': 'srm://srm.ndgf.org:8443/srm/managerv2?SFN=', 'flavour': '
[2021-09-28 16:34:14]  replicas=None
[2021-09-28 16:34:14]  scope=hc_test
[2021-09-28 16:34:14]  status=None
[2021-09-28 16:34:14]  status_code=0
[2021-09-28 16:34:14]  storage_token=
[2021-09-28 16:34:14]  surl=/var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root
[2021-09-28 16:34:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/f4/ad/output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root
[2021-09-28 16:34:14]  workdir=None
[2021-09-28 16:34:14] ]
[2021-09-28 16:34:14] 2021-09-28 20:33:04,456 | INFO     | transferring file output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root from /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/output.1.40c66b30-e4bc-4
[2021-09-28 16:34:14] 2021-09-28 20:33:04,465 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root /var/lib/boi
[2021-09-28 16:34:14] 2021-09-28 20:33:05,194 | INFO     | Adding to output.list: output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root davs://dav.ndgf.org:443;autodir=no;spacetoken=ATLASDATADISK/atlas/disk/atlasda
[2021-09-28 16:34:14] 2021-09-28 20:33:05,195 | INFO     | executing command: ps aux -q 61696
[2021-09-28 16:34:14] 2021-09-28 20:33:05,757 | INFO     | summary of transferred files:
[2021-09-28 16:34:14] 2021-09-28 20:33:05,758 | INFO     |  -- lfn=output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root, status_code=0, status=transferred
[2021-09-28 16:34:14] 2021-09-28 20:33:05,758 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306
[2021-09-28 16:34:14] 2021-09-28 20:33:06,261 | INFO     | monitor loop #48: job 0:5204692306 is in state 'stageout'
[2021-09-28 16:34:14] 2021-09-28 20:33:06,262 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 143171 B
[2021-09-28 16:34:14] 2021-09-28 20:33:06,262 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1410170 B
[2021-09-28 16:34:14] 2021-09-28 20:33:06,262 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13121 B
[2021-09-28 16:34:14] 2021-09-28 20:33:06,521 | WARNING  | failed to remove directory: /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root_002 (2, No such fil
[2021-09-28 16:34:14] 2021-09-28 20:33:06,522 | WARNING  | failed to remove directory: /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root_001 (2, No such fil
[2021-09-28 16:34:14] 2021-09-28 20:33:06,523 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306
[2021-09-28 16:34:14] 2021-09-28 20:33:06,653 | INFO     | sufficient remaining disk space (40449867776 B)
[2021-09-28 16:34:14] 2021-09-28 20:33:06,653 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2021-09-28 16:34:14] 2021-09-28 20:33:06,656 | INFO     | size of work directory /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306: 2589301 B (within 61362667520 B limit)
[2021-09-28 16:34:14] 2021-09-28 20:33:06,656 | INFO     | pfn file=/var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/EVNT.04972714._000029.pool.root.1 does not exist (skip from workdir size calculation)
[2021-09-28 16:34:14] 2021-09-28 20:33:06,656 | INFO     | pfn file=/var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root does not exist (skip from workdir size
[2021-09-28 16:34:14] 2021-09-28 20:33:06,656 | INFO     | total size of present input+output files: 0 B (workdir size: 2589301 B)
[2021-09-28 16:34:14] 2021-09-28 20:33:06,657 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root si
[2021-09-28 16:34:14] 2021-09-28 20:33:07,150 | INFO     | will create archive /var/lib/boinc-client/slots/10/tarball_PandaJob_5204692306_BOINC-TEST/40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz
[2021-09-28 16:34:14] 2021-09-28 20:33:07,151 | INFO     | executing command: pwd;tar cvfz /var/lib/boinc-client/slots/10/tarball_PandaJob_5204692306_BOINC-TEST/40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz tarb
[2021-09-28 16:34:14] 2021-09-28 20:33:07,355 | INFO     | number of running child processes to parent process 70840: 1
[2021-09-28 16:34:14] 2021-09-28 20:33:07,361 | INFO     | maximum number of monitored processes: 7
[2021-09-28 16:34:14] 2021-09-28 20:33:08,022 | INFO     | prepare to stage-out 1 log file(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:08,023 | INFO     | stage-out will not be done in a container
[2021-09-28 16:34:14] 2021-09-28 20:33:08,025 | INFO     | configured copytools per activity: acopytools={'pr': ['mv'], 'pw': ['mv'], 'read_lan': ['mv'], 'write_lan': ['mv'], 'default': ['rucio']}
[2021-09-28 16:34:14] 2021-09-28 20:33:08,025 | INFO     | [prepare_destinations][pl]: allowed (local) destinations: ['NDGF-T1_DATADISK']
[2021-09-28 16:34:14] 2021-09-28 20:33:08,025 | INFO     | [prepare_destinations][pl]: resolved default destination ddm=NDGF-T1_DATADISK
[2021-09-28 16:34:14] 2021-09-28 20:33:08,025 | INFO     | trying to use copytool=mv for activity=['pl', 'pw', 'w', 'default']
[2021-09-28 16:34:14] 2021-09-28 20:33:08,594 | INFO     | Resolved protocol to be used for transfer: '{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}': l
[2021-09-28 16:34:14] 2021-09-28 20:33:08,594 | INFO     | ready to transfer (stage-out) files: [ accessmode=
[2021-09-28 16:34:14]  activity=['pl', 'pw', 'w', 'default']
[2021-09-28 16:34:14]  allow_lan=True
[2021-09-28 16:34:14]  allow_wan=False
[2021-09-28 16:34:14]  checksum={'adler32': 'fd0c6c55'}
[2021-09-28 16:34:14]  dataset=hc_test.gangarbt.hc20217274.tid957.BOINC-TEST.19
[2021-09-28 16:34:14]  ddm_activity=<filter object at 0x7fcf4d4c1c90>
[2021-09-28 16:34:14]  ddmendpoint=NDGF-T1_DATADISK
[2021-09-28 16:34:14]  direct_access_lan=False
[2021-09-28 16:34:14]  direct_access_wan=False
[2021-09-28 16:34:14]  domain=
[2021-09-28 16:34:14]  filesize=463088
[2021-09-28 16:34:14]  filetype=log
[2021-09-28 16:34:14]  guid=3745993d-000a-4ba1-9838-dccdf1e8a72b
[2021-09-28 16:34:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2021-09-28 16:34:14]  is_tar=False
[2021-09-28 16:34:14]  lfn=40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz
[2021-09-28 16:34:14]  mtime=0
[2021-09-28 16:34:14]  protocol_id=None
[2021-09-28 16:34:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}, {'endpoint': 'srm://srm.ndgf.org:8443/srm/managerv2?SFN=', 'flavour': '
[2021-09-28 16:34:14]  replicas=None
[2021-09-28 16:34:14]  scope=hc_test
[2021-09-28 16:34:14]  status=None
[2021-09-28 16:34:14]  status_code=0
[2021-09-28 16:34:14]  storage_token=
[2021-09-28 16:34:14]  surl=/var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz
[2021-09-28 16:34:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/e1/a3/40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz
[2021-09-28 16:34:14]  workdir=None
[2021-09-28 16:34:14] ]
[2021-09-28 16:34:14] 2021-09-28 20:33:08,906 | INFO     | transferring file 40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz from /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/40c66b30-e4bc-4c75-8b11-daefd
[2021-09-28 16:34:14] 2021-09-28 20:33:08,917 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz /var/lib/boinc-cl
[2021-09-28 16:34:14] 2021-09-28 20:33:09,461 | INFO     | Adding to output.list: 40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz davs://dav.ndgf.org:443;autodir=no;spacetoken=ATLASDATADISK/atlas/disk/atlasdatadis
[2021-09-28 16:34:14] 2021-09-28 20:33:09,462 | INFO     | executing command: ps aux -q 61696
[2021-09-28 16:34:14] 2021-09-28 20:33:09,972 | INFO     | summary of transferred files:
[2021-09-28 16:34:14] 2021-09-28 20:33:09,972 | INFO     |  -- lfn=40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz, status_code=0, status=transferred
[2021-09-28 16:34:14] 2021-09-28 20:33:09,972 | INFO     | stage-out finished correctly
[2021-09-28 16:34:14] 2021-09-28 20:33:10,232 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2021-09-28 16:34:14] 2021-09-28 20:33:12,753 | INFO     | job 5204692306 has state=finished
[2021-09-28 16:34:14] 2021-09-28 20:33:12,757 | INFO     | preparing for final server update for job 5204692306 in state='finished'
[2021-09-28 16:34:14] 2021-09-28 20:33:12,757 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2021-09-28 16:34:14] 2021-09-28 20:33:12,758 | INFO     | job 5204692306 has finished - writing final server update
[2021-09-28 16:34:14] 2021-09-28 20:33:12,759 | INFO     | fitting pss+swap vs Time
[2021-09-28 16:34:14] 2021-09-28 20:33:12,760 | INFO     | current memory leak: -141.79 B/s (using 54 data points, chi2=12812605)
[2021-09-28 16:34:14] 2021-09-28 20:33:12,760 | INFO     | mean actualcorecount: 4.565217
[2021-09-28 16:34:14] 2021-09-28 20:33:12,761 | INFO     | total number of processed events: 2 (read)
[2021-09-28 16:34:14] 2021-09-28 20:33:12,794 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2021-09-28 16:34:14] 2021-09-28 20:33:13,402 | INFO     | using path: /var/lib/boinc-client/slots/10/PanDA_Pilot-5204692306/memory_monitor_summary.json (trf name=prmon)
[2021-09-28 16:34:14] 2021-09-28 20:33:13,404 | INFO     | extracted standard info from prmon json
[2021-09-28 16:34:14] 2021-09-28 20:33:13,404 | INFO     | extracted standard memory fields from prmon json
[2021-09-28 16:34:14] 2021-09-28 20:33:13,404 | INFO     | ..............................
[2021-09-28 16:34:14] 2021-09-28 20:33:13,409 | INFO     | . Timing measurements:
[2021-09-28 16:34:14] 2021-09-28 20:33:13,409 | INFO     | . get job = 0 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,409 | INFO     | . initial setup = 3 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,409 | INFO     | . payload setup = 162 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,409 | INFO     | . total setup = 165 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,409 | INFO     | . stage-in = 1 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,410 | INFO     | . payload execution = 3806 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,410 | INFO     | . stage-out = 6 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,410 | INFO     | ..............................
[2021-09-28 16:34:14] 2021-09-28 20:33:13,933 | INFO     | 
[2021-09-28 16:34:14] 2021-09-28 20:33:13,945 | INFO     | job summary report
[2021-09-28 16:34:14] 2021-09-28 20:33:13,945 | INFO     | --------------------------------------------------
[2021-09-28 16:34:14] 2021-09-28 20:33:13,945 | INFO     | PanDA job id: 5204692306
[2021-09-28 16:34:14] 2021-09-28 20:33:13,945 | INFO     | task id: NULL
[2021-09-28 16:34:14] 2021-09-28 20:33:13,945 | INFO     | errors: (none)
[2021-09-28 16:34:14] 2021-09-28 20:33:13,945 | INFO     | status: LOG_TRANSFER = DONE 
[2021-09-28 16:34:14] 2021-09-28 20:33:13,946 | INFO     | pilot state: finished 
[2021-09-28 16:34:14] 2021-09-28 20:33:13,946 | INFO     | transexitcode: 0
[2021-09-28 16:34:14] 2021-09-28 20:33:13,946 | INFO     | exeerrorcode: 0
[2021-09-28 16:34:14] 2021-09-28 20:33:13,946 | INFO     | exeerrordiag: 
[2021-09-28 16:34:14] 2021-09-28 20:33:13,946 | INFO     | exitcode: 0
[2021-09-28 16:34:14] 2021-09-28 20:33:13,946 | INFO     | exitmsg: OK
[2021-09-28 16:34:14] 2021-09-28 20:33:13,946 | INFO     | cpuconsumptiontime: 2236 s
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | nevents: 2
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | neventsw: 0
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | pid: 70840
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | pgrp: 70840
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | corecount: 2
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | event service: False
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | sizes: {18250417: 3894267, 18250418: 3894380, 18250420: 3894546, 18250429: 3894488, 18254403: 3920166, 18254404: 3920165, 18254410: 3929875, 18254411: 3929931, 182
[2021-09-28 16:34:14] 2021-09-28 20:33:13,947 | INFO     | --------------------------------------------------
[2021-09-28 16:34:14] 2021-09-28 20:33:13,948 | INFO     | 
[2021-09-28 16:34:14] 2021-09-28 20:33:13,948 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/10
[2021-09-28 16:34:14] 2021-09-28 20:33:14,742 | INFO     | queue jobs has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,742 | INFO     | queue payloads has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,742 | INFO     | queue data_in has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,742 | INFO     | queue data_out has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,743 | INFO     | queue current_data_in has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,743 | INFO     | queue validated_jobs has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,743 | INFO     | queue validated_payloads has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,743 | INFO     | queue monitored_payloads has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,743 | INFO     | queue finished_jobs has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,743 | INFO     | queue finished_payloads has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,743 | INFO     | queue finished_data_in has 1 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,744 | INFO     | queue finished_data_out has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,744 | INFO     | queue failed_jobs has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,744 | INFO     | queue failed_payloads has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,744 | INFO     | queue failed_data_in has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,744 | INFO     | queue failed_data_out has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,744 | INFO     | queue completed_jobs has 0 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,744 | INFO     | queue completed_jobids has 1 job(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,749 | INFO     | job 5204692306 has completed (purged errors)
[2021-09-28 16:34:14] 2021-09-28 20:33:14,749 | INFO     | overall cleanup function is called
[2021-09-28 16:34:14] 2021-09-28 20:33:15,765 | INFO     | --- collectZombieJob: --- 10, [70840]
[2021-09-28 16:34:14] 2021-09-28 20:33:15,765 | INFO     | zombie collector trying to kill pid 70840
[2021-09-28 16:34:14] 2021-09-28 20:33:15,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2021-09-28 16:34:14] 2021-09-28 20:33:16,769 | INFO     | collected zombie processes
[2021-09-28 16:34:14] 2021-09-28 20:33:16,769 | INFO     | will now attempt to kill all subprocesses of pid=70840
[2021-09-28 16:34:14] 2021-09-28 20:33:17,622 | INFO     | process IDs to be killed: [70840] (in reverse order)
[2021-09-28 16:34:14] 2021-09-28 20:33:18,291 | WARNING  | found no corresponding commands to process id(s)
[2021-09-28 16:34:14] 2021-09-28 20:33:18,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2021-09-28 16:34:14] 2021-09-28 20:33:18,292 | INFO     | ready for new job
[2021-09-28 16:34:14] 2021-09-28 20:33:18,292 | INFO     | pilot has finished for previous job - re-establishing logging
[2021-09-28 16:34:14] 2021-09-28 20:33:18,297 | INFO     | ****************************************
[2021-09-28 16:34:14] 2021-09-28 20:33:18,298 | INFO     | ***  PanDA Pilot version 2.12.6 (1)  ***
[2021-09-28 16:34:14] 2021-09-28 20:33:18,298 | INFO     | ****************************************
[2021-09-28 16:34:14] 2021-09-28 20:33:18,298 | INFO     | 
[2021-09-28 16:34:14] 2021-09-28 20:33:18,319 | INFO     | architecture information:
[2021-09-28 16:34:14] 2021-09-28 20:33:22,205 | INFO     | 
[2021-09-28 16:34:14] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2021-09-28 16:34:14] Distributor ID:	CentOS
[2021-09-28 16:34:14] Description:	CentOS Linux release 7.8.2003 (Core)
[2021-09-28 16:34:14] Release:	7.8.2003
[2021-09-28 16:34:14] Codename:	Core
[2021-09-28 16:34:14] 2021-09-28 20:33:22,205 | INFO     | ****************************************
[2021-09-28 16:34:14] 2021-09-28 20:33:23,025 | INFO     | sufficient remaining disk space (40451964928 B)
[2021-09-28 16:34:14] 2021-09-28 20:33:23,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2021-09-28 16:34:14] 2021-09-28 20:33:23,028 | WARNING  | aborting monitor loop since graceful_stop has been set
[2021-09-28 16:34:14] 2021-09-28 20:33:23,028 | INFO     | [monitor] control thread has ended
[2021-09-28 16:34:14] 2021-09-28 20:33:23,033 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2021-09-28 16:34:14] 2021-09-28 20:33:23,113 | INFO     | [payload] validate_post thread has finished
[2021-09-28 16:34:14] 2021-09-28 20:33:23,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2021-09-28 16:34:14] 2021-09-28 20:33:23,857 | INFO     | [payload] failed_post thread has finished
[2021-09-28 16:34:14] 2021-09-28 20:33:24,141 | INFO     | [payload] validate_pre thread has finished
[2021-09-28 16:34:14] 2021-09-28 20:33:24,141 | INFO     | [payload] execute_payloads thread has finished
[2021-09-28 16:34:14] 2021-09-28 20:33:25,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2021-09-28 16:34:14] 2021-09-28 20:34:08,997 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
[2021-09-28 16:34:14] 2021-09-28 20:34:09,705 | INFO     | end of generic workflow (traces error code: 0)
[2021-09-28 16:34:14] 2021-09-28 20:34:09,705 | INFO     | traces error code: 0
[2021-09-28 16:34:14] 2021-09-28 20:34:09,705 | INFO     | pilot has finished
[2021-09-28 16:34:14] 2021-09-28 20:34:10,017 [wrapper] ==== pilot stdout END ====
[2021-09-28 16:34:14] 2021-09-28 20:34:10,177 [wrapper] ==== wrapper stdout RESUME ====
[2021-09-28 16:34:14] 2021-09-28 20:34:10,309 [wrapper] Pilot exit status: 0
[2021-09-28 16:34:14] 2021-09-28 20:34:10,965 [wrapper] pandaids: 5204692306
[2021-09-28 16:34:14] 2021-09-28 20:34:11,242 [wrapper] apfmon messages muted
[2021-09-28 16:34:14] 2021-09-28 20:34:11,401 [wrapper] Test setup, not cleaning
[2021-09-28 16:34:14] 2021-09-28 20:34:11,525 [wrapper] ==== wrapper stdout END ====
[2021-09-28 16:34:14] 2021-09-28 20:34:11,729 [wrapper] ==== wrapper stderr END ====
[2021-09-28 16:34:14] 2021-09-28 20:34:12,057 [wrapper] wrapperexiting ec=0, duration=4295
[2021-09-28 16:34:14] 2021-09-28 20:34:12,273 [wrapper] apfmon messages muted
[2021-09-28 16:34:14]  *** Error codes and diagnostics ***
[2021-09-28 16:34:14]     "exeErrorCode": 0,
[2021-09-28 16:34:14]     "exeErrorDiag": "",
[2021-09-28 16:34:14]     "pilotErrorCode": 0,
[2021-09-28 16:34:14]     "pilotErrorDiag": "",
[2021-09-28 16:34:14]  *** Listing of results directory ***
[2021-09-28 16:34:14] total 45920
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc   344681 Sep 28 13:28 pilot2.tar.gz
[2021-09-28 16:34:14] -rwx------ 1 boinc boinc    20816 Sep 28 13:40 runpilot2-wrapper.sh
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc     3214 Sep 28 13:40 queuedata.json
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc      107 Sep 28 15:22 wrapper_26015_x86_64-pc-linux-gnu
[2021-09-28 16:34:14] -rwxr-xr-x 1 boinc boinc     6966 Sep 28 15:22 run_atlas
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc      112 Sep 28 15:22 job.xml
[2021-09-28 16:34:14] drwxrwx--x 2 boinc boinc     4096 Sep 28 15:22 shared
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc     6168 Sep 28 15:22 init_data.xml
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc        0 Sep 28 15:22 boinc_lockfile
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc 37658468 Sep 28 15:22 EVNT.04972714._000029.pool.root.1
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc    16541 Sep 28 15:22 start_atlas.sh
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc   354545 Sep 28 15:22 input.tar.gz
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc     2612 Sep 28 15:22 pandaJob.out
[2021-09-28 16:34:14] -rw------- 1 boinc boinc  1080950 Sep 28 15:26 agis_schedconf.cvmfs.json
[2021-09-28 16:34:14] -rw------- 1 boinc boinc  1948362 Sep 28 15:26 cric_ddmendpoints.json
[2021-09-28 16:34:14] drwx------ 4 boinc boinc     4096 Sep 28 15:26 pilot2
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc      535 Sep 28 16:10 boinc_task_state.xml
[2021-09-28 16:34:14] -rw------- 1 boinc boinc  2076648 Sep 28 16:32 output.1.40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.pool.root
[2021-09-28 16:34:14] -rw------- 1 boinc boinc     1021 Sep 28 16:32 memory_monitor_summary.json
[2021-09-28 16:34:14] -rw------- 1 boinc boinc   463088 Sep 28 16:33 40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log.tgz
[2021-09-28 16:34:14] -rw------- 1 boinc boinc     7913 Sep 28 16:33 heartbeat.json
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc     8192 Sep 28 16:34 boinc_mmap_file
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc       26 Sep 28 16:34 wrapper_checkpoint.txt
[2021-09-28 16:34:14] -rw------- 1 boinc boinc     1893 Sep 28 16:34 pilotlog.txt
[2021-09-28 16:34:14] -rw------- 1 boinc boinc   175598 Sep 28 16:34 40c66b30-e4bc-4c75-8b11-daefd18385a0_42061.1.job.log
[2021-09-28 16:34:14] -rw------- 1 boinc boinc      536 Sep 28 16:34 output.list
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc      748 Sep 28 16:34 runtime_log
[2021-09-28 16:34:14] -rw------- 1 boinc boinc  2734080 Sep 28 16:34 result.tar.gz
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc     9557 Sep 28 16:34 runtime_log.err
[2021-09-28 16:34:14] -rw------- 1 boinc boinc      565 Sep 28 16:34 m15LDmiGWpzn7Olcko1bjSoqABFKDmABFKDmZr2WDm6OFKDmsXhKFm.diag
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc    22492 Sep 28 16:34 stderr.txt
[2021-09-28 16:34:14] HITS file was successfully produced:
[2021-09-28 16:34:14] -rw------- 1 boinc boinc 2076648 Sep 28 16:32 shared/HITS.pool.root.1
[2021-09-28 16:34:14]  *** Contents of shared directory: ***
[2021-09-28 16:34:14] total 41844
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc    16541 Sep 28 15:22 start_atlas.sh
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc   354545 Sep 28 15:22 input.tar.gz
[2021-09-28 16:34:14] -rw-r--r-- 1 boinc boinc 37658468 Sep 28 15:22 ATLAS.root_0
[2021-09-28 16:34:14] -rw------- 1 boinc boinc  2076648 Sep 28 16:32 HITS.pool.root.1
[2021-09-28 16:34:14] -rw------- 1 boinc boinc  2734080 Sep 28 16:34 result.tar.gz
16:34:15 (49141): run_atlas exited; CPU time 2052.932148
16:34:15 (49141): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN