Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
01:54:19 (24452): wrapper (7.7.26015): starting
01:54:19 (24452): wrapper: running run_atlas (--nthreads 2)
[2021-09-30 01:54:19] Arguments: --nthreads 2
[2021-09-30 01:54:19] Threads: 2
[2021-09-30 01:54:19] Checking for CVMFS
[2021-09-30 01:54:21] Probing /cvmfs/atlas.cern.ch... OK
[2021-09-30 01:54:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-09-30 01:54:22] Running cvmfs_config stat atlas.cern.ch
[2021-09-30 01:54:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-09-30 01:54:23] 2.9.0.0 147949 13192 68796 93085 3 77 3732904 4194305 6785 130560 0 117108874 99.994 884744 869 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 0
[2021-09-30 01:54:23] CVMFS is ok
[2021-09-30 01:54:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-09-30 01:54:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2021-09-30 01:54:23] Small home clusters do not require a local http proxy but it is suggested if
[2021-09-30 01:54:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2021-09-30 01:54:23] Further information can be found at the LHC@home message board.
[2021-09-30 01:54:23] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-09-30 01:54:23] Checking for singularity binary...
[2021-09-30 01:54:23] Using singularity found in PATH at /usr/local/bin/singularity
[2021-09-30 01:54:23] Running /usr/local/bin/singularity --version
[2021-09-30 01:54:23] singularity version 3.7.2+10-ga969f0f8c
[2021-09-30 01:54:23] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-09-30 01:54:25] E5-2670
[2021-09-30 01:54:25] Singularity works
[2021-09-30 01:54:25] Set ATHENA_PROC_NUMBER=2
[2021-09-30 01:54:25] Starting ATLAS job with PandaID=5206087045
[2021-09-30 01:54:25] Running command: /usr/local/bin/singularity exec --pwd /var/lib/boinc-client/slots/1 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-09-30 01:54:38] Job failed
[2021-09-30 01:54:38] ++ pwd
[2021-09-30 01:54:38] + export RUNTIME_CONFIG_DIR=/var/lib/boinc-client/slots/1/
[2021-09-30 01:54:38] + RUNTIME_CONFIG_DIR=/var/lib/boinc-client/slots/1/
[2021-09-30 01:54:38] + mv ATLAS.root_0 EVNT.04972714._000024.pool.root.1
[2021-09-30 01:54:38] + tar --strip-components=5 -xvf input.tar.gz
[2021-09-30 01:54:38] + umask 077
[2021-09-30 01:54:38] + echo 'Detecting resource accounting method available for the job.'
[2021-09-30 01:54:38] Detecting resource accounting method available for the job.
[2021-09-30 01:54:38] + JOB_ACCOUNTING=
[2021-09-30 01:54:38] + command -v arc-job-cgroup
[2021-09-30 01:54:38] + '[' -z '' ']'
[2021-09-30 01:54:38] + GNU_TIME=/usr/bin/time
[2021-09-30 01:54:38] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2021-09-30 01:54:38] Looking for /usr/bin/time tool for accounting measurements
[2021-09-30 01:54:38] + '[' '!' -z /usr/bin/time ']'
[2021-09-30 01:54:38] + /usr/bin/time --version
[2021-09-30 01:54:38] + echo 'GNU time found and will be used for job accounting.'
[2021-09-30 01:54:38] GNU time found and will be used for job accounting.
[2021-09-30 01:54:38] + JOB_ACCOUNTING=gnutime
[2021-09-30 01:54:38] + '[' -z gnutime ']'
[2021-09-30 01:54:38] + export PANDA_JSID=harvester-CERN_central_ACTA
[2021-09-30 01:54:38] + PANDA_JSID=harvester-CERN_central_ACTA
[2021-09-30 01:54:38] + export GTAG=http://aipanda404.cern.ch/data/jobs/2021-09-30/BOINC-TEST/5206087045.out
[2021-09-30 01:54:38] + GTAG=http://aipanda404.cern.ch/data/jobs/2021-09-30/BOINC-TEST/5206087045.out
[2021-09-30 01:54:38] + export PILOT_NOKILL=YES
[2021-09-30 01:54:38] + PILOT_NOKILL=YES
[2021-09-30 01:54:38] + export GRID_GLOBAL_JOBID=R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo
[2021-09-30 01:54:38] + GRID_GLOBAL_JOBID=R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo
[2021-09-30 01:54:38] + export GRID_GLOBAL_JOBURL=https://arc-boinc-04.cern.ch:443/arex/R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo
[2021-09-30 01:54:38] + GRID_GLOBAL_JOBURL=https://arc-boinc-04.cern.ch:443/arex/R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo
[2021-09-30 01:54:38] + export GRID_GLOBAL_JOBINTERFACE=org.ogf.glue.emies.activitycreation
[2021-09-30 01:54:38] + GRID_GLOBAL_JOBINTERFACE=org.ogf.glue.emies.activitycreation
[2021-09-30 01:54:38] + export GRID_GLOBAL_JOBHOST=arc-boinc-04.cern.ch
[2021-09-30 01:54:38] + GRID_GLOBAL_JOBHOST=arc-boinc-04.cern.ch
[2021-09-30 01:54:38] ++ pwd
[2021-09-30 01:54:38] + RUNTIME_JOB_DIR=/var/lib/boinc-client/slots/1
[2021-09-30 01:54:38] + RUNTIME_JOB_STDIN=/dev/null
[2021-09-30 01:54:38] ++ pwd
[2021-09-30 01:54:38] + RUNTIME_JOB_STDOUT=/var/lib/boinc-client/slots/1/67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log
[2021-09-30 01:54:38] ++ pwd
[2021-09-30 01:54:38] + RUNTIME_JOB_STDERR=/var/lib/boinc-client/slots/1/67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log
[2021-09-30 01:54:38] ++ pwd
[2021-09-30 01:54:38] + RUNTIME_JOB_DIAG=/var/lib/boinc-client/slots/1.diag
[2021-09-30 01:54:38] + '[' '!' -z '' ']'
[2021-09-30 01:54:38] + RUNTIME_LOCAL_SCRATCH_DIR=
[2021-09-30 01:54:38] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2021-09-30 01:54:38] + RUNTIME_FRONTEND_SEES_NODE=
[2021-09-30 01:54:38] + RUNTIME_NODE_SEES_FRONTEND=yes
[2021-09-30 01:54:38] + '[' '!' -z '' ']'
[2021-09-30 01:54:38] + '[' -z yes ']'
[2021-09-30 01:54:38] ++ pwd
[2021-09-30 01:54:38] + RUNTIME_JOB_DIAG=/var/lib/boinc-client/slots/1/R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo.diag
[2021-09-30 01:54:38] + runtimeenvironments=
[2021-09-30 01:54:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2021-09-30 01:54:38] + RTE_function_0 1
[2021-09-30 01:54:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-09-30 01:54:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-09-30 01:54:38] + export BOINC_APP=ATLAS
[2021-09-30 01:54:38] + BOINC_APP=ATLAS
[2021-09-30 01:54:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-09-30 01:54:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-09-30 01:54:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-09-30 01:54:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-09-30 01:54:38] + '[' -z 1 ']'
[2021-09-30 01:54:38] + '[' 1 == 1 ']'
[2021-09-30 01:54:38] + shift
[2021-09-30 01:54:38] + '[' -e /var/lib/boinc-client/slots/1/init_data.xml ']'
[2021-09-30 01:54:38] + grep '<use_http_proxy/>' /var/lib/boinc-client/slots/1/init_data.xml
[2021-09-30 01:54:38] + '[' -e /var/lib/boinc-client/slots/1/init_data.xml ']'
[2021-09-30 01:54:38] + grep '.cern.ch</domain_name>' /var/lib/boinc-client/slots/1/init_data.xml
[2021-09-30 01:54:38] + '[' 0 -ne 0 ']'
[2021-09-30 01:54:38] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2021-09-30 01:54:38] + '[' -f /etc/os-release ']'
[2021-09-30 01:54:38] +++ cat /etc/os-release
[2021-09-30 01:54:38] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2021-09-30 01:54:38] +++ NAME='CentOS Linux'
[2021-09-30 01:54:38] +++ VERSION='7 (Core)'
[2021-09-30 01:54:38] +++ ID=centos
[2021-09-30 01:54:38] +++ ID_LIKE='rhel fedora'
[2021-09-30 01:54:38] +++ VERSION_ID=7
[2021-09-30 01:54:38] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2021-09-30 01:54:38] +++ ANSI_COLOR='0;31'
[2021-09-30 01:54:38] +++ CPE_NAME=cpe:/o:centos:centos:7
[2021-09-30 01:54:38] +++ HOME_URL=https://www.centos.org/
[2021-09-30 01:54:38] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2021-09-30 01:54:38] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2021-09-30 01:54:38] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2021-09-30 01:54:38] +++ REDHAT_SUPPORT_PRODUCT=centos
[2021-09-30 01:54:38] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2021-09-30 01:54:38] ++ echo 'CentOS Linux 7 (Core)'
[2021-09-30 01:54:38] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2021-09-30 01:54:38] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2021-09-30 01:54:38] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2021-09-30 01:54:38] + HOME=/var/lib/boinc-client/slots/1
[2021-09-30 01:54:38] + export HOME
[2021-09-30 01:54:38] + cd /var/lib/boinc-client/slots/1
[2021-09-30 01:54:38] + '[' '!' -z '' ']'
[2021-09-30 01:54:38] + '[' -z '' ']'
[2021-09-30 01:54:38] ++ /bin/hostname -f
[2021-09-30 01:54:38] + nodename=E5-2670
[2021-09-30 01:54:38] + echo nodename=E5-2670
[2021-09-30 01:54:38] + echo Processors=1
[2021-09-30 01:54:38] + echo Benchmark=HEPSPEC:1.0
[2021-09-30 01:54:38] + executable=./runpilot2-wrapper.sh
[2021-09-30 01:54:38] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2021-09-30 01:54:38] ++ head -n 1
[2021-09-30 01:54:38] ++ dd if=./runpilot2-wrapper.sh count=1
[2021-09-30 01:54:38] + line1='#!/bin/bash'
[2021-09-30 01:54:38] ++ sed -n 's/^#! *//p'
[2021-09-30 01:54:38] ++ echo '#!/bin/bash'
[2021-09-30 01:54:38] + shebang=/bin/bash
[2021-09-30 01:54:38] ++ awk '{print $1}'
[2021-09-30 01:54:38] ++ echo /bin/bash
[2021-09-30 01:54:38] + interpreter=/bin/bash
[2021-09-30 01:54:38] + '[' /bin/bash = /usr/bin/env ']'
[2021-09-30 01:54:38] + '[' x/bin/bash = x ']'
[2021-09-30 01:54:38] + type /bin/bash
[2021-09-30 01:54:38] + '[' xgnutime = xgnutime ']'
[2021-09-30 01:54:38] + /usr/bin/time -o /var/lib/boinc-client/slots/1/R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC-TEST -r BOINC-TEST -s BOINC-TEST -j rc_test2 --pilot-user ATLAS -w generic --job-type managed --resource-type SCORE -d -i RC --pythonversion 3 -z -t --piloturl local --mute
[2021-09-30 01:54:38] + RESULT=1
[2021-09-30 01:54:38] + sed -i -e /nodename=/d /var/lib/boinc-client/slots/1/R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo.diag
[2021-09-30 01:54:38] ++ awk -F '<' '{print $1}'
[2021-09-30 01:54:38] ++ grep domain_name init_data.xml
[2021-09-30 01:54:38] ++ sed -e 's# #_#g'
[2021-09-30 01:54:38] ++ awk -F '>' '{print $2}'
[2021-09-30 01:54:38] + hostname=E5-2670
[2021-09-30 01:54:38] ++ awk -F '>' '{print $2}'
[2021-09-30 01:54:38] ++ grep user_name init_data.xml
[2021-09-30 01:54:38] ++ awk -F '<' '{print $1}'
[2021-09-30 01:54:38] ++ sed -e 's# #_#g'
[2021-09-30 01:54:38] + username=mmonnin
[2021-09-30 01:54:38] + nodename=mmonnin@E5-2670
[2021-09-30 01:54:38] + echo nodename=mmonnin@E5-2670
[2021-09-30 01:54:38] + '[' -n 2 ']'
[2021-09-30 01:54:38] + sed -i -e s/Processors=1/Processors=2/ /var/lib/boinc-client/slots/1/R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo.diag
[2021-09-30 01:54:38] + echo exitcode=1
[2021-09-30 01:54:38] + runtimeenvironments=
[2021-09-30 01:54:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2021-09-30 01:54:38] + RTE_function_0 2
[2021-09-30 01:54:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-09-30 01:54:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-09-30 01:54:38] + export BOINC_APP=ATLAS
[2021-09-30 01:54:38] + BOINC_APP=ATLAS
[2021-09-30 01:54:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-09-30 01:54:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-09-30 01:54:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-09-30 01:54:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-09-30 01:54:38] + '[' -z 2 ']'
[2021-09-30 01:54:38] + '[' 2 == 1 ']'
[2021-09-30 01:54:38] + '[' 0 -ne 0 ']'
[2021-09-30 01:54:38] + echo 'zip all output files'
[2021-09-30 01:54:38] + flist='*.diag '
[2021-09-30 01:54:38] + for f in ./heartbeat.json ./output.list ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./gmlog
[2021-09-30 01:54:38] + '[' -e ./heartbeat.json ']'
[2021-09-30 01:54:38] + for f in ./heartbeat.json ./output.list ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./gmlog
[2021-09-30 01:54:38] + '[' -e ./output.list ']'
[2021-09-30 01:54:38] + for f in ./heartbeat.json ./output.list ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./gmlog
[2021-09-30 01:54:38] + '[' -e ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ']'
[2021-09-30 01:54:38] + flist='*.diag  ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log'
[2021-09-30 01:54:38] + for f in ./heartbeat.json ./output.list ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./gmlog
[2021-09-30 01:54:38] + '[' -e ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ']'
[2021-09-30 01:54:38] + flist='*.diag  ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log'
[2021-09-30 01:54:38] + for f in ./heartbeat.json ./output.list ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./gmlog
[2021-09-30 01:54:38] + '[' -e ./gmlog ']'
[2021-09-30 01:54:38] + '[' -f output.list ']'
[2021-09-30 01:54:38] + tar cvf result.tar.gz R58MDmEG3pzn7Olcko1bjSoqABFKDmABFKDmZr2WDmRQFKDmDubOMo.diag ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log
[2021-09-30 01:54:38] + '[' xgnutime = xcgroup ']'
[2021-09-30 01:54:38] + '[' -n '' ']'
[2021-09-30 01:54:38] + '[' -n '' ']'
[2021-09-30 01:54:38] + echo exitcode=1
[2021-09-30 01:54:38] + exit 1
[2021-09-30 01:54:38] ./runtime_log.err
[2021-09-30 01:54:38] ./runtime_log
[2021-09-30 01:54:38] ./67cdb445-1072-49db-9f8d-696d8d8ba52f_94932.1.job.log
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/setuptools/_distutils/log.py
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/setuptools/_distutils/__pycache__/log.cpython-37.pyc
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/pip/_internal/utils/_log.py
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/pip/_internal/utils/logging.py
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/pip/_internal/utils/__pycache__/_log.cpython-37.pyc
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/pip/_internal/utils/__pycache__/logging.cpython-37.pyc
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/pip/_vendor/pep517/colorlog.py
[2021-09-30 01:54:38] ./pilot3/venv/lib/python3.7/site-packages/pip/_vendor/pep517/__pycache__/colorlog.cpython-37.pyc
02:04:38 (24452): run_atlas exited; CPU time 0.842408
02:04:38 (24452): app exit status: 0x1
02:04:38 (24452): called boinc_finish(195)

</stderr_txt>
]]>

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