Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
21:18:47 (79475): wrapper (7.7.26015): starting
21:18:47 (79475): wrapper: running run_atlas (--nthreads 2)
[2021-10-02 21:18:47] Arguments: --nthreads 2
[2021-10-02 21:18:47] Threads: 2
[2021-10-02 21:18:47] Checking for CVMFS
[2021-10-02 21:18:48] Probing /cvmfs/atlas.cern.ch... OK
[2021-10-02 21:18:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-10-02 21:18:48] Running cvmfs_config stat atlas.cern.ch
[2021-10-02 21:18:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-10-02 21:18:50] 2.9.0.0 147949 17237 68588 93259 1 62 3620207 4194304 5260 130560 0 151568414 99.994 1187675 914 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 0
[2021-10-02 21:18:50] CVMFS is ok
[2021-10-02 21:18:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-10-02 21:18:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2021-10-02 21:18:50] Small home clusters do not require a local http proxy but it is suggested if
[2021-10-02 21:18:50] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2021-10-02 21:18:50] Further information can be found at the LHC@home message board.
[2021-10-02 21:18:50] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-10-02 21:18:50] Checking for singularity binary...
[2021-10-02 21:18:50] Using singularity found in PATH at /usr/local/bin/singularity
[2021-10-02 21:18:50] Running /usr/local/bin/singularity --version
[2021-10-02 21:18:50] singularity version 3.7.2+10-ga969f0f8c
[2021-10-02 21:18:50] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-10-02 21:18:51] E5-2670
[2021-10-02 21:18:51] Singularity works
[2021-10-02 21:18:52] Set ATHENA_PROC_NUMBER=2
[2021-10-02 21:18:52] Starting ATLAS job with PandaID=5209418810
[2021-10-02 21:18:52] Running command: /usr/local/bin/singularity exec --pwd /var/lib/boinc-client/slots/1 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-10-02 22:36:02]  *** The last 200 lines of the pilot log: ***
[2021-10-02 22:36:02]  domain=
[2021-10-02 22:36:02]  filesize=1269198
[2021-10-02 22:36:02]  filetype=output
[2021-10-02 22:36:02]  guid=20C2BF3D-F58D-2940-A45F-30EC8D90C9D7
[2021-10-02 22:36:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2021-10-02 22:36:02]  is_tar=False
[2021-10-02 22:36:02]  lfn=output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root
[2021-10-02 22:36:02]  mtime=0
[2021-10-02 22:36:02]  protocol_id=None
[2021-10-02 22:36:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}, {'endpoint': 'srm://srm.ndgf.org:8443/srm/managerv2?SFN=', 'flavour': '
[2021-10-02 22:36:02]  replicas=None
[2021-10-02 22:36:02]  scope=hc_test
[2021-10-02 22:36:02]  status=None
[2021-10-02 22:36:02]  status_code=0
[2021-10-02 22:36:02]  storage_token=
[2021-10-02 22:36:02]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root
[2021-10-02 22:36:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/2d/7b/output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root
[2021-10-02 22:36:02]  workdir=None
[2021-10-02 22:36:02] ]
[2021-10-02 22:36:02] 2021-10-03 02:34:52,123 | INFO     | transferring file output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root from /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/output.1.d163ce5a-a260-40
[2021-10-02 22:36:02] 2021-10-03 02:34:52,124 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root /var/lib/boin
[2021-10-02 22:36:02] 2021-10-03 02:34:52,700 | INFO     | Adding to output.list: output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root davs://dav.ndgf.org:443;autodir=no;spacetoken=ATLASDATADISK/atlas/disk/atlasda
[2021-10-02 22:36:02] 2021-10-03 02:34:52,725 | INFO     | executing command: ps aux -q 93360
[2021-10-02 22:36:02] 2021-10-03 02:34:53,417 | INFO     | summary of transferred files:
[2021-10-02 22:36:02] 2021-10-03 02:34:53,417 | INFO     |  -- lfn=output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root, status_code=0, status=transferred
[2021-10-02 22:36:02] 2021-10-03 02:34:53,418 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810
[2021-10-02 22:36:02] 2021-10-03 02:34:53,913 | WARNING  | failed to remove directory: /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root_001 (2, No such file
[2021-10-02 22:36:02] 2021-10-03 02:34:53,913 | WARNING  | failed to remove directory: /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root_002 (2, No such file
[2021-10-02 22:36:02] 2021-10-03 02:34:53,915 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810
[2021-10-02 22:36:02] 2021-10-03 02:34:54,228 | INFO     | will create archive /var/lib/boinc-client/slots/1/tarball_PandaJob_5209418810_BOINC-TEST/d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz
[2021-10-02 22:36:02] 2021-10-03 02:34:54,228 | INFO     | executing command: pwd;tar cvfz /var/lib/boinc-client/slots/1/tarball_PandaJob_5209418810_BOINC-TEST/d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz tarba
[2021-10-02 22:36:02] 2021-10-03 02:34:55,001 | INFO     | prepare to stage-out 1 log file(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:55,001 | INFO     | stage-out will not be done in a container
[2021-10-02 22:36:02] 2021-10-03 02:34:55,002 | INFO     | configured copytools per activity: acopytools={'pr': ['mv'], 'pw': ['mv'], 'read_lan': ['mv'], 'write_lan': ['mv'], 'default': ['rucio']}
[2021-10-02 22:36:02] 2021-10-03 02:34:55,002 | INFO     | [prepare_destinations][pl]: allowed (local) destinations: ['NDGF-T1_DATADISK']
[2021-10-02 22:36:02] 2021-10-03 02:34:55,003 | INFO     | [prepare_destinations][pl]: resolved default destination ddm=NDGF-T1_DATADISK
[2021-10-02 22:36:02] 2021-10-03 02:34:55,003 | INFO     | trying to use copytool=mv for activity=['pl', 'pw', 'w', 'default']
[2021-10-02 22:36:02] 2021-10-03 02:34:55,109 | INFO     | monitor loop #51: job 0:5209418810 is in state 'stageout'
[2021-10-02 22:36:02] 2021-10-03 02:34:55,109 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 144102 B
[2021-10-02 22:36:02] 2021-10-03 02:34:55,110 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1397291 B
[2021-10-02 22:36:02] 2021-10-03 02:34:55,110 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13119 B
[2021-10-02 22:36:02] 2021-10-03 02:34:55,477 | INFO     | sufficient remaining disk space (43713036288 B)
[2021-10-02 22:36:02] 2021-10-03 02:34:55,477 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2021-10-02 22:36:02] 2021-10-03 02:34:55,480 | INFO     | size of work directory /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810: 3032690 B (within 61362667520 B limit)
[2021-10-02 22:36:02] 2021-10-03 02:34:55,480 | INFO     | pfn file=/var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/EVNT.04972714._000033.pool.root.1 does not exist (skip from workdir size calculation)
[2021-10-02 22:36:02] 2021-10-03 02:34:55,480 | INFO     | pfn file=/var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root does not exist (skip from workdir size 
[2021-10-02 22:36:02] 2021-10-03 02:34:55,480 | INFO     | total size of present input+output files: 0 B (workdir size: 3032690 B)
[2021-10-02 22:36:02] 2021-10-03 02:34:55,480 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root sin
[2021-10-02 22:36:02] 2021-10-03 02:34:55,685 | INFO     | Resolved protocol to be used for transfer: '{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}': l
[2021-10-02 22:36:02] 2021-10-03 02:34:55,686 | INFO     | ready to transfer (stage-out) files: [ accessmode=
[2021-10-02 22:36:02]  activity=['pl', 'pw', 'w', 'default']
[2021-10-02 22:36:02]  allow_lan=True
[2021-10-02 22:36:02]  allow_wan=False
[2021-10-02 22:36:02]  checksum={'adler32': 'd08b7d71'}
[2021-10-02 22:36:02]  dataset=hc_test.gangarbt.hc20217333.tid1028.BOINC-TEST.148
[2021-10-02 22:36:02]  ddm_activity=<filter object at 0x7f6ab581bd50>
[2021-10-02 22:36:02]  ddmendpoint=NDGF-T1_DATADISK
[2021-10-02 22:36:02]  direct_access_lan=False
[2021-10-02 22:36:02]  direct_access_wan=False
[2021-10-02 22:36:02]  domain=
[2021-10-02 22:36:02]  filesize=459889
[2021-10-02 22:36:02]  filetype=log
[2021-10-02 22:36:02]  guid=aef6f8a4-37d3-49e2-a861-bc90116eba9a
[2021-10-02 22:36:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2021-10-02 22:36:02]  is_tar=False
[2021-10-02 22:36:02]  lfn=d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz
[2021-10-02 22:36:02]  mtime=0
[2021-10-02 22:36:02]  protocol_id=None
[2021-10-02 22:36:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}, {'endpoint': 'srm://srm.ndgf.org:8443/srm/managerv2?SFN=', 'flavour': '
[2021-10-02 22:36:02]  replicas=None
[2021-10-02 22:36:02]  scope=hc_test
[2021-10-02 22:36:02]  status=None
[2021-10-02 22:36:02]  status_code=0
[2021-10-02 22:36:02]  storage_token=
[2021-10-02 22:36:02]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz
[2021-10-02 22:36:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/c0/fe/d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz
[2021-10-02 22:36:02]  workdir=None
[2021-10-02 22:36:02] ]
[2021-10-02 22:36:02] 2021-10-03 02:34:55,864 | INFO     | transferring file d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz from /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/d163ce5a-a260-4067-9988-4f6361
[2021-10-02 22:36:02] 2021-10-03 02:34:55,864 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz /var/lib/boinc-cli
[2021-10-02 22:36:02] 2021-10-03 02:34:56,029 | INFO     | number of running child processes to parent process 104640: 1
[2021-10-02 22:36:02] 2021-10-03 02:34:56,030 | INFO     | maximum number of monitored processes: 10
[2021-10-02 22:36:02] 2021-10-03 02:34:56,354 | INFO     | Adding to output.list: d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz davs://dav.ndgf.org:443;autodir=no;spacetoken=ATLASDATADISK/atlas/disk/atlasdatadis
[2021-10-02 22:36:02] 2021-10-03 02:34:56,354 | INFO     | executing command: ps aux -q 93360
[2021-10-02 22:36:02] 2021-10-03 02:34:56,925 | INFO     | summary of transferred files:
[2021-10-02 22:36:02] 2021-10-03 02:34:56,925 | INFO     |  -- lfn=d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz, status_code=0, status=transferred
[2021-10-02 22:36:02] 2021-10-03 02:34:56,926 | INFO     | stage-out finished correctly
[2021-10-02 22:36:02] 2021-10-03 02:34:57,384 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2021-10-02 22:36:02] 2021-10-03 02:34:57,679 | INFO     | job 5209418810 has state=finished
[2021-10-02 22:36:02] 2021-10-03 02:34:57,679 | INFO     | preparing for final server update for job 5209418810 in state='finished'
[2021-10-02 22:36:02] 2021-10-03 02:34:57,680 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2021-10-02 22:36:02] 2021-10-03 02:34:57,680 | INFO     | job 5209418810 has finished - writing final server update
[2021-10-02 22:36:02] 2021-10-03 02:34:57,682 | INFO     | fitting pss+swap vs Time
[2021-10-02 22:36:02] 2021-10-03 02:34:57,701 | INFO     | current memory leak: -15.93 B/s (using 56 data points, chi2=14915833)
[2021-10-02 22:36:02] 2021-10-03 02:34:57,701 | INFO     | mean actualcorecount: 4.562500
[2021-10-02 22:36:02] 2021-10-03 02:34:57,701 | INFO     | total number of processed events: 2 (read)
[2021-10-02 22:36:02] 2021-10-03 02:34:57,722 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2021-10-02 22:36:02] 2021-10-03 02:34:58,121 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-5209418810/memory_monitor_summary.json (trf name=prmon)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,126 | INFO     | extracted standard info from prmon json
[2021-10-02 22:36:02] 2021-10-03 02:34:58,127 | INFO     | extracted standard memory fields from prmon json
[2021-10-02 22:36:02] 2021-10-03 02:34:58,127 | INFO     | ..............................
[2021-10-02 22:36:02] 2021-10-03 02:34:58,127 | INFO     | . Timing measurements:
[2021-10-02 22:36:02] 2021-10-03 02:34:58,127 | INFO     | . get job = 0 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,127 | INFO     | . initial setup = 4 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,127 | INFO     | . payload setup = 232 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,127 | INFO     | . total setup = 236 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,128 | INFO     | . stage-in = 2 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,128 | INFO     | . payload execution = 3992 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,128 | INFO     | . stage-out = 5 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,128 | INFO     | ..............................
[2021-10-02 22:36:02] 2021-10-03 02:34:58,657 | INFO     | 
[2021-10-02 22:36:02] 2021-10-03 02:34:58,657 | INFO     | job summary report
[2021-10-02 22:36:02] 2021-10-03 02:34:58,657 | INFO     | --------------------------------------------------
[2021-10-02 22:36:02] 2021-10-03 02:34:58,657 | INFO     | PanDA job id: 5209418810
[2021-10-02 22:36:02] 2021-10-03 02:34:58,657 | INFO     | task id: NULL
[2021-10-02 22:36:02] 2021-10-03 02:34:58,658 | INFO     | errors: (none)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,658 | INFO     | status: LOG_TRANSFER = DONE 
[2021-10-02 22:36:02] 2021-10-03 02:34:58,658 | INFO     | pilot state: finished 
[2021-10-02 22:36:02] 2021-10-03 02:34:58,658 | INFO     | transexitcode: 0
[2021-10-02 22:36:02] 2021-10-03 02:34:58,658 | INFO     | exeerrorcode: 0
[2021-10-02 22:36:02] 2021-10-03 02:34:58,658 | INFO     | exeerrordiag: 
[2021-10-02 22:36:02] 2021-10-03 02:34:58,658 | INFO     | exitcode: 0
[2021-10-02 22:36:02] 2021-10-03 02:34:58,659 | INFO     | exitmsg: OK
[2021-10-02 22:36:02] 2021-10-03 02:34:58,659 | INFO     | cpuconsumptiontime: 1332 s
[2021-10-02 22:36:02] 2021-10-03 02:34:58,659 | INFO     | nevents: 2
[2021-10-02 22:36:02] 2021-10-03 02:34:58,659 | INFO     | neventsw: 0
[2021-10-02 22:36:02] 2021-10-03 02:34:58,659 | INFO     | pid: 104640
[2021-10-02 22:36:02] 2021-10-03 02:34:58,659 | INFO     | pgrp: 104640
[2021-10-02 22:36:02] 2021-10-03 02:34:58,659 | INFO     | corecount: 2
[2021-10-02 22:36:02] 2021-10-03 02:34:58,660 | INFO     | event service: False
[2021-10-02 22:36:02] 2021-10-03 02:34:58,660 | INFO     | sizes: {18617467: 3901887, 18617468: 3902056, 18617469: 3902056, 18617470: 3899237, 18617471: 3902220, 18617480: 3902276, 18621711: 3928265, 18621712: 3928264, 186
[2021-10-02 22:36:02] 2021-10-03 02:34:58,660 | INFO     | --------------------------------------------------
[2021-10-02 22:36:02] 2021-10-03 02:34:58,660 | INFO     | 
[2021-10-02 22:36:02] 2021-10-03 02:34:58,660 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2021-10-02 22:36:02] 2021-10-03 02:34:58,985 | INFO     | queue jobs has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,985 | INFO     | queue payloads has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue data_in has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue data_out has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue current_data_in has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue validated_jobs has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue validated_payloads has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue monitored_payloads has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue finished_jobs has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,986 | INFO     | queue finished_payloads has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,987 | INFO     | queue finished_data_in has 1 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,987 | INFO     | queue finished_data_out has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,987 | INFO     | queue failed_jobs has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,987 | INFO     | queue failed_payloads has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,987 | INFO     | queue failed_data_in has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,987 | INFO     | queue failed_data_out has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,987 | INFO     | queue completed_jobs has 0 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,988 | INFO     | queue completed_jobids has 1 job(s)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,988 | INFO     | job 5209418810 has completed (purged errors)
[2021-10-02 22:36:02] 2021-10-03 02:34:58,988 | INFO     | overall cleanup function is called
[2021-10-02 22:36:02] 2021-10-03 02:35:00,005 | INFO     | --- collectZombieJob: --- 10, [104640]
[2021-10-02 22:36:02] 2021-10-03 02:35:00,005 | INFO     | zombie collector trying to kill pid 104640
[2021-10-02 22:36:02] 2021-10-03 02:35:00,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2021-10-02 22:36:02] 2021-10-03 02:35:01,013 | INFO     | collected zombie processes
[2021-10-02 22:36:02] 2021-10-03 02:35:01,013 | INFO     | will now attempt to kill all subprocesses of pid=104640
[2021-10-02 22:36:02] 2021-10-03 02:35:01,349 | INFO     | process IDs to be killed: [104640] (in reverse order)
[2021-10-02 22:36:02] 2021-10-03 02:35:01,855 | WARNING  | found no corresponding commands to process id(s)
[2021-10-02 22:36:02] 2021-10-03 02:35:01,855 | INFO     | Do not look for orphan processes in BOINC jobs
[2021-10-02 22:36:02] 2021-10-03 02:35:01,856 | INFO     | ready for new job
[2021-10-02 22:36:02] 2021-10-03 02:35:01,856 | INFO     | pilot has finished for previous job - re-establishing logging
[2021-10-02 22:36:02] 2021-10-03 02:35:01,857 | INFO     | ****************************************
[2021-10-02 22:36:02] 2021-10-03 02:35:01,857 | INFO     | ***  PanDA Pilot version 2.12.6 (1)  ***
[2021-10-02 22:36:02] 2021-10-03 02:35:01,857 | INFO     | ****************************************
[2021-10-02 22:36:02] 2021-10-03 02:35:01,857 | INFO     | 
[2021-10-02 22:36:02] 2021-10-03 02:35:01,882 | INFO     | architecture information:
[2021-10-02 22:36:02] 2021-10-03 02:35:03,880 | INFO     | 
[2021-10-02 22:36:02] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2021-10-02 22:36:02] Distributor ID:	CentOS
[2021-10-02 22:36:02] Description:	CentOS Linux release 7.8.2003 (Core)
[2021-10-02 22:36:02] Release:	7.8.2003
[2021-10-02 22:36:02] Codename:	Core
[2021-10-02 22:36:02] 2021-10-03 02:35:03,880 | INFO     | ****************************************
[2021-10-02 22:36:02] 2021-10-03 02:35:04,709 | INFO     | sufficient remaining disk space (43715133440 B)
[2021-10-02 22:36:02] 2021-10-03 02:35:04,709 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2021-10-02 22:36:02] 2021-10-03 02:35:05,325 | INFO     | [monitor] control thread has ended
[2021-10-02 22:36:02] 2021-10-03 02:35:05,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2021-10-02 22:36:02] 2021-10-03 02:35:05,541 | INFO     | [payload] failed_post thread has finished
[2021-10-02 22:36:02] 2021-10-03 02:35:05,861 | INFO     | [payload] execute_payloads thread has finished
[2021-10-02 22:36:02] 2021-10-03 02:35:05,897 | INFO     | [payload] validate_pre thread has finished
[2021-10-02 22:36:02] 2021-10-03 02:35:06,241 | INFO     | [payload] validate_post thread has finished
[2021-10-02 22:36:02] 2021-10-03 02:35:07,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2021-10-02 22:36:02] 2021-10-03 02:35:08,221 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2021-10-02 22:36:02] 2021-10-03 02:35:57,649 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
[2021-10-02 22:36:02] 2021-10-03 02:35:58,153 | INFO     | end of generic workflow (traces error code: 0)
[2021-10-02 22:36:02] 2021-10-03 02:35:58,153 | INFO     | traces error code: 0
[2021-10-02 22:36:02] 2021-10-03 02:35:58,161 | INFO     | pilot has finished
[2021-10-02 22:36:02] 2021-10-03 02:35:58,379 [wrapper] ==== pilot stdout END ====
[2021-10-02 22:36:02] 2021-10-03 02:35:58,509 [wrapper] ==== wrapper stdout RESUME ====
[2021-10-02 22:36:02] 2021-10-03 02:35:58,725 [wrapper] Pilot exit status: 0
[2021-10-02 22:36:02] 2021-10-03 02:35:59,188 [wrapper] pandaids: 5209418810
[2021-10-02 22:36:02] 2021-10-03 02:35:59,301 [wrapper] apfmon messages muted
[2021-10-02 22:36:02] 2021-10-03 02:35:59,469 [wrapper] Test setup, not cleaning
[2021-10-02 22:36:02] 2021-10-03 02:35:59,697 [wrapper] ==== wrapper stdout END ====
[2021-10-02 22:36:02] 2021-10-03 02:35:59,908 [wrapper] ==== wrapper stderr END ====
[2021-10-02 22:36:02] 2021-10-03 02:36:00,189 [wrapper] wrapperexiting ec=0, duration=4625
[2021-10-02 22:36:02] 2021-10-03 02:36:00,545 [wrapper] apfmon messages muted
[2021-10-02 22:36:02]  *** Error codes and diagnostics ***
[2021-10-02 22:36:02]     "exeErrorCode": 0,
[2021-10-02 22:36:02]     "exeErrorDiag": "",
[2021-10-02 22:36:02]     "pilotErrorCode": 0,
[2021-10-02 22:36:02]     "pilotErrorDiag": "",
[2021-10-02 22:36:02]  *** Listing of results directory ***
[2021-10-02 22:36:02] total 44168
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc   344681 Oct  2 20:37 pilot2.tar.gz
[2021-10-02 22:36:02] -rwx------ 1 boinc boinc    20816 Oct  2 20:58 runpilot2-wrapper.sh
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc     3214 Oct  2 20:58 queuedata.json
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc      107 Oct  2 21:18 wrapper_26015_x86_64-pc-linux-gnu
[2021-10-02 22:36:02] -rwxr-xr-x 1 boinc boinc     6966 Oct  2 21:18 run_atlas
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc      112 Oct  2 21:18 job.xml
[2021-10-02 22:36:02] drwxrwx--x 2 boinc boinc     4096 Oct  2 21:18 shared
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc     6167 Oct  2 21:18 init_data.xml
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc        0 Oct  2 21:18 boinc_lockfile
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc    16545 Oct  2 21:18 start_atlas.sh
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc   354522 Oct  2 21:18 input.tar.gz
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc 37438704 Oct  2 21:18 EVNT.04972714._000033.pool.root.1
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc     2589 Oct  2 21:18 pandaJob.out
[2021-10-02 22:36:02] -rw------- 1 boinc boinc  1081995 Oct  2 21:24 agis_schedconf.cvmfs.json
[2021-10-02 22:36:02] -rw------- 1 boinc boinc  1966446 Oct  2 21:24 cric_ddmendpoints.json
[2021-10-02 22:36:02] drwx------ 4 boinc boinc     4096 Oct  2 21:24 pilot2
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc      534 Oct  2 22:22 boinc_task_state.xml
[2021-10-02 22:36:02] -rw------- 1 boinc boinc  1269198 Oct  2 22:34 output.1.d163ce5a-a260-4067-9988-4f6361fc9233_69614.pool.root
[2021-10-02 22:36:02] -rw------- 1 boinc boinc     1018 Oct  2 22:34 memory_monitor_summary.json
[2021-10-02 22:36:02] -rw------- 1 boinc boinc   459889 Oct  2 22:34 d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log.tgz
[2021-10-02 22:36:02] -rw------- 1 boinc boinc     7912 Oct  2 22:34 heartbeat.json
[2021-10-02 22:36:02] -rw------- 1 boinc boinc     1801 Oct  2 22:35 pilotlog.txt
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc       25 Oct  2 22:35 wrapper_checkpoint.txt
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc     8192 Oct  2 22:35 boinc_mmap_file
[2021-10-02 22:36:02] -rw------- 1 boinc boinc   180823 Oct  2 22:36 d163ce5a-a260-4067-9988-4f6361fc9233_69614.1.job.log
[2021-10-02 22:36:02] -rw------- 1 boinc boinc      536 Oct  2 22:36 output.list
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc      748 Oct  2 22:36 runtime_log
[2021-10-02 22:36:02] -rw------- 1 boinc boinc  1935360 Oct  2 22:36 result.tar.gz
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc     9543 Oct  2 22:36 runtime_log.err
[2021-10-02 22:36:02] -rw------- 1 boinc boinc      565 Oct  2 22:36 nYXNDmD14qzn7Olcko1bjSoqABFKDmABFKDmZr2WDm5UFKDmWci76m.diag
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc    22411 Oct  2 22:36 stderr.txt
[2021-10-02 22:36:02] HITS file was successfully produced:
[2021-10-02 22:36:02] -rw------- 1 boinc boinc 1269198 Oct  2 22:34 shared/HITS.pool.root.1
[2021-10-02 22:36:02]  *** Contents of shared directory: ***
[2021-10-02 22:36:02] total 40064
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc 37438704 Oct  2 21:18 ATLAS.root_0
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc    16545 Oct  2 21:18 start_atlas.sh
[2021-10-02 22:36:02] -rw-r--r-- 1 boinc boinc   354522 Oct  2 21:18 input.tar.gz
[2021-10-02 22:36:02] -rw------- 1 boinc boinc  1269198 Oct  2 22:34 HITS.pool.root.1
[2021-10-02 22:36:02] -rw------- 1 boinc boinc  1935360 Oct  2 22:36 result.tar.gz
22:36:04 (79475): run_atlas exited; CPU time 1158.382499
22:36:04 (79475): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN