Stderr output

<core_client_version>7.9.3</core_client_version>
<![CDATA[
<stderr_txt>
02:17:06 (67254): wrapper (7.7.26015): starting
02:17:06 (67254): wrapper: running run_atlas (--nthreads 2)
[2021-10-07 02:17:06] Arguments: --nthreads 2
[2021-10-07 02:17:06] Threads: 2
[2021-10-07 02:17:06] Checking for CVMFS
[2021-10-07 02:17:07] Probing /cvmfs/atlas.cern.ch... OK
[2021-10-07 02:17:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-10-07 02:17:08] Running cvmfs_config stat atlas.cern.ch
[2021-10-07 02:17:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-10-07 02:17:10] 2.9.0.0 147949 23295 70016 93518 0 62 4185935 4194304 5553 130560 0 203894276 99.994 1591597 975 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 0
[2021-10-07 02:17:10] CVMFS is ok
[2021-10-07 02:17:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-10-07 02:17:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2021-10-07 02:17:10] Small home clusters do not require a local http proxy but it is suggested if
[2021-10-07 02:17:10] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2021-10-07 02:17:10] Further information can be found at the LHC@home message board.
[2021-10-07 02:17:10] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-10-07 02:17:10] Checking for singularity binary...
[2021-10-07 02:17:10] Using singularity found in PATH at /usr/local/bin/singularity
[2021-10-07 02:17:10] Running /usr/local/bin/singularity --version
[2021-10-07 02:17:10] singularity version 3.7.2+10-ga969f0f8c
[2021-10-07 02:17:10] Checking singularity works with /usr/local/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-10-07 02:17:12] E5-2670
[2021-10-07 02:17:12] Singularity works
[2021-10-07 02:17:12] Set ATHENA_PROC_NUMBER=2
[2021-10-07 02:17:12] Starting ATLAS job with PandaID=5213158671
[2021-10-07 02:17:12] Running command: /usr/local/bin/singularity exec --pwd /var/lib/boinc-client/slots/4 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-10-07 03:21:58]  *** The last 200 lines of the pilot log: ***
[2021-10-07 03:21:58]  filesize=1780665
[2021-10-07 03:21:58]  filetype=output
[2021-10-07 03:21:58]  guid=B1B672B9-EFDA-274C-94C6-86E3761753B1
[2021-10-07 03:21:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2021-10-07 03:21:58]  is_tar=False
[2021-10-07 03:21:58]  lfn=output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root
[2021-10-07 03:21:58]  mtime=0
[2021-10-07 03:21:58]  protocol_id=None
[2021-10-07 03:21:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}, {'endpoint': 'srm://srm.ndgf.org:8443/srm/managerv2?SFN=', 'flavour': '
[2021-10-07 03:21:58]  replicas=None
[2021-10-07 03:21:58]  scope=hc_test
[2021-10-07 03:21:58]  status=None
[2021-10-07 03:21:58]  status_code=0
[2021-10-07 03:21:58]  storage_token=
[2021-10-07 03:21:58]  surl=/var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root
[2021-10-07 03:21:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/51/f4/output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root
[2021-10-07 03:21:58]  workdir=None
[2021-10-07 03:21:58] ]
[2021-10-07 03:21:58] 2021-10-07 07:20:44,529 | INFO     | transferring file output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root from /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/output.1.d83f4a13-db23-4d
[2021-10-07 03:21:58] 2021-10-07 07:20:44,541 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root /var/lib/boin
[2021-10-07 03:21:58] 2021-10-07 07:20:45,161 | INFO     | Adding to output.list: output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root davs://dav.ndgf.org:443;autodir=no;spacetoken=ATLASDATADISK/atlas/disk/atlasda
[2021-10-07 03:21:58] 2021-10-07 07:20:45,205 | INFO     | executing command: ps aux -q 79181
[2021-10-07 03:21:58] 2021-10-07 07:20:46,050 | INFO     | summary of transferred files:
[2021-10-07 03:21:58] 2021-10-07 07:20:46,051 | INFO     |  -- lfn=output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root, status_code=0, status=transferred
[2021-10-07 03:21:58] 2021-10-07 07:20:46,051 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671
[2021-10-07 03:21:58] 2021-10-07 07:20:46,945 | WARNING  | failed to remove directory: /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root_002 (2, No such file
[2021-10-07 03:21:58] 2021-10-07 07:20:46,945 | WARNING  | failed to remove directory: /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root_001 (2, No such file
[2021-10-07 03:21:58] 2021-10-07 07:20:46,947 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671
[2021-10-07 03:21:58] 2021-10-07 07:20:47,677 | INFO     | will create archive /var/lib/boinc-client/slots/4/tarball_PandaJob_5213158671_BOINC-TEST/d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz
[2021-10-07 03:21:58] 2021-10-07 07:20:47,678 | INFO     | executing command: pwd;tar cvfz /var/lib/boinc-client/slots/4/tarball_PandaJob_5213158671_BOINC-TEST/d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz tarba
[2021-10-07 03:21:58] 2021-10-07 07:20:48,734 | INFO     | prepare to stage-out 1 log file(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:48,734 | INFO     | stage-out will not be done in a container
[2021-10-07 03:21:58] 2021-10-07 07:20:48,739 | INFO     | configured copytools per activity: acopytools={'pr': ['mv'], 'pw': ['mv'], 'read_lan': ['mv'], 'write_lan': ['mv'], 'default': ['rucio']}
[2021-10-07 03:21:58] 2021-10-07 07:20:48,739 | INFO     | [prepare_destinations][pl]: allowed (local) destinations: ['NDGF-T1_DATADISK']
[2021-10-07 03:21:58] 2021-10-07 07:20:48,739 | INFO     | [prepare_destinations][pl]: resolved default destination ddm=NDGF-T1_DATADISK
[2021-10-07 03:21:58] 2021-10-07 07:20:48,739 | INFO     | trying to use copytool=mv for activity=['pl', 'pw', 'w', 'default']
[2021-10-07 03:21:58] 2021-10-07 07:20:49,467 | INFO     | Resolved protocol to be used for transfer: '{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}': l
[2021-10-07 03:21:58] 2021-10-07 07:20:49,468 | INFO     | ready to transfer (stage-out) files: [ accessmode=
[2021-10-07 03:21:58]  activity=['pl', 'pw', 'w', 'default']
[2021-10-07 03:21:58]  allow_lan=True
[2021-10-07 03:21:58]  allow_wan=False
[2021-10-07 03:21:58]  checksum={'adler32': '8f99a849'}
[2021-10-07 03:21:58]  dataset=hc_test.gangarbt.hc20223960.tid1036.BOINC-TEST.34
[2021-10-07 03:21:58]  ddm_activity=<filter object at 0x7f6312fc9510>
[2021-10-07 03:21:58]  ddmendpoint=NDGF-T1_DATADISK
[2021-10-07 03:21:58]  direct_access_lan=False
[2021-10-07 03:21:58]  direct_access_wan=False
[2021-10-07 03:21:58]  domain=
[2021-10-07 03:21:58]  filesize=457493
[2021-10-07 03:21:58]  filetype=log
[2021-10-07 03:21:58]  guid=5c983961-9114-4268-ad53-c3ef96b20de8
[2021-10-07 03:21:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2021-10-07 03:21:58]  is_tar=False
[2021-10-07 03:21:58]  lfn=d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz
[2021-10-07 03:21:58]  mtime=0
[2021-10-07 03:21:58]  protocol_id=None
[2021-10-07 03:21:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}, {'endpoint': 'srm://srm.ndgf.org:8443/srm/managerv2?SFN=', 'flavour': '
[2021-10-07 03:21:58]  replicas=None
[2021-10-07 03:21:58]  scope=hc_test
[2021-10-07 03:21:58]  status=None
[2021-10-07 03:21:58]  status_code=0
[2021-10-07 03:21:58]  storage_token=
[2021-10-07 03:21:58]  surl=/var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz
[2021-10-07 03:21:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/57/3c/d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz
[2021-10-07 03:21:58]  workdir=None
[2021-10-07 03:21:58] ]
[2021-10-07 03:21:58] 2021-10-07 07:20:49,728 | INFO     | transferring file d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz from /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/d83f4a13-db23-4d3b-8830-db3c4c
[2021-10-07 03:21:58] 2021-10-07 07:20:49,737 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz /var/lib/boinc-cli
[2021-10-07 03:21:58] 2021-10-07 07:20:50,049 | INFO     | monitor loop #43: job 0:5213158671 is in state 'stageout'
[2021-10-07 03:21:58] 2021-10-07 07:20:50,070 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 145505 B
[2021-10-07 03:21:58] 2021-10-07 07:20:50,070 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 1408642 B
[2021-10-07 03:21:58] 2021-10-07 07:20:50,070 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13119 B
[2021-10-07 03:21:58] 2021-10-07 07:20:50,609 | INFO     | sufficient remaining disk space (45711622144 B)
[2021-10-07 03:21:58] 2021-10-07 07:20:50,613 | INFO     | work directory size check will use 61362667520 B as a max limit (10% grace limit added)
[2021-10-07 03:21:58] 2021-10-07 07:20:50,615 | INFO     | size of work directory /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671: 3043279 B (within 61362667520 B limit)
[2021-10-07 03:21:58] 2021-10-07 07:20:50,616 | INFO     | pfn file=/var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/EVNT.04972714._000023.pool.root.1 does not exist (skip from workdir size calculation)
[2021-10-07 03:21:58] 2021-10-07 07:20:50,616 | INFO     | pfn file=/var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root does not exist (skip from workdir size 
[2021-10-07 03:21:58] 2021-10-07 07:20:50,616 | INFO     | total size of present input+output files: 0 B (workdir size: 3043279 B)
[2021-10-07 03:21:58] 2021-10-07 07:20:50,616 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root sin
[2021-10-07 03:21:58] 2021-10-07 07:20:50,705 | INFO     | Adding to output.list: d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz davs://dav.ndgf.org:443;autodir=no;spacetoken=ATLASDATADISK/atlas/disk/atlasdatadis
[2021-10-07 03:21:58] 2021-10-07 07:20:50,706 | INFO     | executing command: ps aux -q 79181
[2021-10-07 03:21:58] 2021-10-07 07:20:51,818 | INFO     | summary of transferred files:
[2021-10-07 03:21:58] 2021-10-07 07:20:51,826 | INFO     |  -- lfn=d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz, status_code=0, status=transferred
[2021-10-07 03:21:58] 2021-10-07 07:20:51,826 | INFO     | stage-out finished correctly
[2021-10-07 03:21:58] 2021-10-07 07:20:51,845 | INFO     | number of running child processes to parent process 86651: 1
[2021-10-07 03:21:58] 2021-10-07 07:20:51,846 | INFO     | maximum number of monitored processes: 10
[2021-10-07 03:21:58] 2021-10-07 07:20:54,493 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2021-10-07 03:21:58] 2021-10-07 07:20:56,115 | INFO     | job 5213158671 has state=finished
[2021-10-07 03:21:58] 2021-10-07 07:20:56,117 | INFO     | preparing for final server update for job 5213158671 in state='finished'
[2021-10-07 03:21:58] 2021-10-07 07:20:56,121 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2021-10-07 03:21:58] 2021-10-07 07:20:56,122 | INFO     | job 5213158671 has finished - writing final server update
[2021-10-07 03:21:58] 2021-10-07 07:20:56,150 | INFO     | fitting pss+swap vs Time
[2021-10-07 03:21:58] 2021-10-07 07:20:56,151 | INFO     | current memory leak: -171.54 B/s (using 46 data points, chi2=10830921)
[2021-10-07 03:21:58] 2021-10-07 07:20:56,151 | INFO     | mean actualcorecount: 4.950000
[2021-10-07 03:21:58] 2021-10-07 07:20:56,151 | INFO     | total number of processed events: 2 (read)
[2021-10-07 03:21:58] 2021-10-07 07:20:56,171 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2021-10-07 03:21:58] 2021-10-07 07:20:56,881 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-5213158671/memory_monitor_summary.json (trf name=prmon)
[2021-10-07 03:21:58] 2021-10-07 07:20:56,883 | INFO     | extracted standard info from prmon json
[2021-10-07 03:21:58] 2021-10-07 07:20:56,884 | INFO     | extracted standard memory fields from prmon json
[2021-10-07 03:21:58] 2021-10-07 07:20:56,884 | INFO     | ..............................
[2021-10-07 03:21:58] 2021-10-07 07:20:56,884 | INFO     | . Timing measurements:
[2021-10-07 03:21:58] 2021-10-07 07:20:56,884 | INFO     | . get job = 0 s
[2021-10-07 03:21:58] 2021-10-07 07:20:56,884 | INFO     | . initial setup = 3 s
[2021-10-07 03:21:58] 2021-10-07 07:20:56,884 | INFO     | . payload setup = 192 s
[2021-10-07 03:21:58] 2021-10-07 07:20:56,889 | INFO     | . total setup = 195 s
[2021-10-07 03:21:58] 2021-10-07 07:20:56,889 | INFO     | . stage-in = 0 s
[2021-10-07 03:21:58] 2021-10-07 07:20:56,889 | INFO     | . payload execution = 3317 s
[2021-10-07 03:21:58] 2021-10-07 07:20:56,889 | INFO     | . stage-out = 8 s
[2021-10-07 03:21:58] 2021-10-07 07:20:56,889 | INFO     | ..............................
[2021-10-07 03:21:58] 2021-10-07 07:20:57,320 | INFO     | 
[2021-10-07 03:21:58] 2021-10-07 07:20:57,320 | INFO     | job summary report
[2021-10-07 03:21:58] 2021-10-07 07:20:57,320 | INFO     | --------------------------------------------------
[2021-10-07 03:21:58] 2021-10-07 07:20:57,320 | INFO     | PanDA job id: 5213158671
[2021-10-07 03:21:58] 2021-10-07 07:20:57,333 | INFO     | task id: NULL
[2021-10-07 03:21:58] 2021-10-07 07:20:57,333 | INFO     | errors: (none)
[2021-10-07 03:21:58] 2021-10-07 07:20:57,333 | INFO     | status: LOG_TRANSFER = DONE 
[2021-10-07 03:21:58] 2021-10-07 07:20:57,345 | INFO     | pilot state: finished 
[2021-10-07 03:21:58] 2021-10-07 07:20:57,345 | INFO     | transexitcode: 0
[2021-10-07 03:21:58] 2021-10-07 07:20:57,345 | INFO     | exeerrorcode: 0
[2021-10-07 03:21:58] 2021-10-07 07:20:57,345 | INFO     | exeerrordiag: 
[2021-10-07 03:21:58] 2021-10-07 07:20:57,349 | INFO     | exitcode: 0
[2021-10-07 03:21:58] 2021-10-07 07:20:57,349 | INFO     | exitmsg: OK
[2021-10-07 03:21:58] 2021-10-07 07:20:57,349 | INFO     | cpuconsumptiontime: 1694 s
[2021-10-07 03:21:58] 2021-10-07 07:20:57,349 | INFO     | nevents: 2
[2021-10-07 03:21:58] 2021-10-07 07:20:57,349 | INFO     | neventsw: 0
[2021-10-07 03:21:58] 2021-10-07 07:20:57,350 | INFO     | pid: 86651
[2021-10-07 03:21:58] 2021-10-07 07:20:57,350 | INFO     | pgrp: 86651
[2021-10-07 03:21:58] 2021-10-07 07:20:57,350 | INFO     | corecount: 2
[2021-10-07 03:21:58] 2021-10-07 07:20:57,350 | INFO     | event service: False
[2021-10-07 03:21:58] 2021-10-07 07:20:57,350 | INFO     | sizes: {18980934: 3917073, 18980935: 3917242, 18980936: 3917350, 18980947: 3917350, 18984463: 3942791, 18984472: 3952315, 18984475: 3952499, 18984477: 3952721}
[2021-10-07 03:21:58] 2021-10-07 07:20:57,350 | INFO     | --------------------------------------------------
[2021-10-07 03:21:58] 2021-10-07 07:20:57,350 | INFO     | 
[2021-10-07 03:21:58] 2021-10-07 07:20:57,351 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2021-10-07 03:21:58] 2021-10-07 07:20:58,210 | INFO     | queue jobs has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,210 | INFO     | queue payloads has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,210 | INFO     | queue data_in has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,210 | INFO     | queue data_out has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,210 | INFO     | queue current_data_in has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue validated_jobs has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue validated_payloads has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue monitored_payloads has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue finished_jobs has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue finished_payloads has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue finished_data_in has 1 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue finished_data_out has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,211 | INFO     | queue failed_jobs has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,212 | INFO     | queue failed_payloads has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,212 | INFO     | queue failed_data_in has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,212 | INFO     | queue failed_data_out has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,212 | INFO     | queue completed_jobs has 0 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,212 | INFO     | queue completed_jobids has 1 job(s)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,212 | INFO     | job 5213158671 has completed (purged errors)
[2021-10-07 03:21:58] 2021-10-07 07:20:58,212 | INFO     | overall cleanup function is called
[2021-10-07 03:21:58] 2021-10-07 07:20:59,245 | INFO     | --- collectZombieJob: --- 10, [86651]
[2021-10-07 03:21:58] 2021-10-07 07:20:59,245 | INFO     | zombie collector trying to kill pid 86651
[2021-10-07 03:21:58] 2021-10-07 07:20:59,245 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2021-10-07 03:21:58] 2021-10-07 07:21:00,252 | INFO     | collected zombie processes
[2021-10-07 03:21:58] 2021-10-07 07:21:00,253 | INFO     | will now attempt to kill all subprocesses of pid=86651
[2021-10-07 03:21:58] 2021-10-07 07:21:01,313 | INFO     | process IDs to be killed: [86651] (in reverse order)
[2021-10-07 03:21:58] 2021-10-07 07:21:02,470 | WARNING  | found no corresponding commands to process id(s)
[2021-10-07 03:21:58] 2021-10-07 07:21:02,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2021-10-07 03:21:58] 2021-10-07 07:21:02,470 | INFO     | ready for new job
[2021-10-07 03:21:58] 2021-10-07 07:21:02,470 | INFO     | pilot has finished for previous job - re-establishing logging
[2021-10-07 03:21:58] 2021-10-07 07:21:02,472 | INFO     | ****************************************
[2021-10-07 03:21:58] 2021-10-07 07:21:02,472 | INFO     | ***  PanDA Pilot version 2.12.6 (1)  ***
[2021-10-07 03:21:58] 2021-10-07 07:21:02,472 | INFO     | ****************************************
[2021-10-07 03:21:58] 2021-10-07 07:21:02,472 | INFO     | 
[2021-10-07 03:21:58] 2021-10-07 07:21:02,486 | INFO     | architecture information:
[2021-10-07 03:21:58] 2021-10-07 07:21:06,957 | INFO     | 
[2021-10-07 03:21:58] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2021-10-07 03:21:58] Distributor ID:	CentOS
[2021-10-07 03:21:58] Description:	CentOS Linux release 7.8.2003 (Core)
[2021-10-07 03:21:58] Release:	7.8.2003
[2021-10-07 03:21:58] Codename:	Core
[2021-10-07 03:21:58] 2021-10-07 07:21:06,957 | INFO     | ****************************************
[2021-10-07 03:21:58] 2021-10-07 07:21:07,749 | INFO     | sufficient remaining disk space (45713719296 B)
[2021-10-07 03:21:58] 2021-10-07 07:21:07,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2021-10-07 03:21:58] 2021-10-07 07:21:07,757 | WARNING  | aborting monitor loop since graceful_stop has been set
[2021-10-07 03:21:58] 2021-10-07 07:21:07,758 | INFO     | [monitor] control thread has ended
[2021-10-07 03:21:58] 2021-10-07 07:21:07,793 | INFO     | [payload] failed_post thread has finished
[2021-10-07 03:21:58] 2021-10-07 07:21:08,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2021-10-07 03:21:58] 2021-10-07 07:21:08,765 | INFO     | [payload] execute_payloads thread has finished
[2021-10-07 03:21:58] 2021-10-07 07:21:09,073 | INFO     | [payload] validate_pre thread has finished
[2021-10-07 03:21:58] 2021-10-07 07:21:09,217 | INFO     | [payload] validate_post thread has finished
[2021-10-07 03:21:58] 2021-10-07 07:21:10,013 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2021-10-07 03:21:58] 2021-10-07 07:21:10,385 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2021-10-07 03:21:58] 2021-10-07 07:21:53,453 | WARNING  | no jobs in monitored_payloads queue (waited for 63 s)
[2021-10-07 03:21:58] 2021-10-07 07:21:54,081 | INFO     | end of generic workflow (traces error code: 0)
[2021-10-07 03:21:58] 2021-10-07 07:21:54,081 | INFO     | traces error code: 0
[2021-10-07 03:21:58] 2021-10-07 07:21:54,081 | INFO     | pilot has finished
[2021-10-07 03:21:58] 2021-10-07 07:21:54,377 [wrapper] ==== pilot stdout END ====
[2021-10-07 03:21:58] 2021-10-07 07:21:54,575 [wrapper] ==== wrapper stdout RESUME ====
[2021-10-07 03:21:58] 2021-10-07 07:21:54,673 [wrapper] Pilot exit status: 0
[2021-10-07 03:21:58] 2021-10-07 07:21:55,389 [wrapper] pandaids: 5213158671
[2021-10-07 03:21:58] 2021-10-07 07:21:55,865 [wrapper] apfmon messages muted
[2021-10-07 03:21:58] 2021-10-07 07:21:55,973 [wrapper] Test setup, not cleaning
[2021-10-07 03:21:58] 2021-10-07 07:21:56,143 [wrapper] ==== wrapper stdout END ====
[2021-10-07 03:21:58] 2021-10-07 07:21:56,289 [wrapper] ==== wrapper stderr END ====
[2021-10-07 03:21:58] 2021-10-07 07:21:56,701 [wrapper] wrapperexiting ec=0, duration=3880
[2021-10-07 03:21:58] 2021-10-07 07:21:56,901 [wrapper] apfmon messages muted
[2021-10-07 03:21:58]  *** Error codes and diagnostics ***
[2021-10-07 03:21:58]     "exeErrorCode": 0,
[2021-10-07 03:21:58]     "exeErrorDiag": "",
[2021-10-07 03:21:58]     "pilotErrorCode": 0,
[2021-10-07 03:21:58]     "pilotErrorDiag": "",
[2021-10-07 03:21:58]  *** Listing of results directory ***
[2021-10-07 03:21:58] total 45680
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc   344681 Oct  7 00:24 pilot2.tar.gz
[2021-10-07 03:21:58] -rwx------ 1 boinc boinc    20631 Oct  7 01:04 runpilot2-wrapper.sh
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc     3214 Oct  7 01:04 queuedata.json
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc      107 Oct  7 02:17 wrapper_26015_x86_64-pc-linux-gnu
[2021-10-07 03:21:58] -rwxr-xr-x 1 boinc boinc     6966 Oct  7 02:17 run_atlas
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc      112 Oct  7 02:17 job.xml
[2021-10-07 03:21:58] drwxrwx--x 2 boinc boinc     4096 Oct  7 02:17 shared
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc     6167 Oct  7 02:17 init_data.xml
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc        0 Oct  7 02:17 boinc_lockfile
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc 38019645 Oct  7 02:17 EVNT.04972714._000023.pool.root.1
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc    16573 Oct  7 02:17 start_atlas.sh
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc   354484 Oct  7 02:17 input.tar.gz
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc     2609 Oct  7 02:17 pandaJob.out
[2021-10-07 03:21:58] -rw------- 1 boinc boinc  1079305 Oct  7 02:21 agis_schedconf.cvmfs.json
[2021-10-07 03:21:58] -rw------- 1 boinc boinc  1972815 Oct  7 02:21 cric_ddmendpoints.json
[2021-10-07 03:21:58] drwx------ 4 boinc boinc     4096 Oct  7 02:21 pilot2
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc      535 Oct  7 02:54 boinc_task_state.xml
[2021-10-07 03:21:58] -rw------- 1 boinc boinc  1780665 Oct  7 03:20 output.1.d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.pool.root
[2021-10-07 03:21:58] -rw------- 1 boinc boinc     1021 Oct  7 03:20 memory_monitor_summary.json
[2021-10-07 03:21:58] -rw------- 1 boinc boinc   457493 Oct  7 03:20 d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log.tgz
[2021-10-07 03:21:58] -rw------- 1 boinc boinc     7925 Oct  7 03:20 heartbeat.json
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc     8192 Oct  7 03:21 boinc_mmap_file
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc       26 Oct  7 03:21 wrapper_checkpoint.txt
[2021-10-07 03:21:58] -rw------- 1 boinc boinc     1893 Oct  7 03:21 pilotlog.txt
[2021-10-07 03:21:58] -rw------- 1 boinc boinc   161629 Oct  7 03:21 d83f4a13-db23-4d3b-8830-db3c4cbb8dee_93457.1.job.log
[2021-10-07 03:21:58] -rw------- 1 boinc boinc      536 Oct  7 03:21 output.list
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc      748 Oct  7 03:21 runtime_log
[2021-10-07 03:21:58] -rw------- 1 boinc boinc  2416640 Oct  7 03:21 result.tar.gz
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc     9553 Oct  7 03:21 runtime_log.err
[2021-10-07 03:21:58] -rw------- 1 boinc boinc      565 Oct  7 03:21 OwXLDmKlaszn7Olcko1bjSoqABFKDmABFKDmZr2WDmeYFKDmEXfTlm.diag
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc    22482 Oct  7 03:21 stderr.txt
[2021-10-07 03:21:58] HITS file was successfully produced:
[2021-10-07 03:21:58] -rw------- 1 boinc boinc 1780665 Oct  7 03:20 shared/HITS.pool.root.1
[2021-10-07 03:21:58]  *** Contents of shared directory: ***
[2021-10-07 03:21:58] total 41604
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc    16573 Oct  7 02:17 start_atlas.sh
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc   354484 Oct  7 02:17 input.tar.gz
[2021-10-07 03:21:58] -rw-r--r-- 1 boinc boinc 38019645 Oct  7 02:17 ATLAS.root_0
[2021-10-07 03:21:58] -rw------- 1 boinc boinc  1780665 Oct  7 03:20 HITS.pool.root.1
[2021-10-07 03:21:58] -rw------- 1 boinc boinc  2416640 Oct  7 03:21 result.tar.gz
03:22:00 (67254): run_atlas exited; CPU time 1520.102467
03:22:00 (67254): called boinc_finish(0)

</stderr_txt>
]]>

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