Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)
</message>
<stderr_txt>
13:37:37 (5782): wrapper (7.7.26015): starting
13:37:37 (5782): wrapper: running run_atlas (--nthreads 2)
[2021-11-20 13:37:37] Arguments: --nthreads 2
[2021-11-20 13:37:37] Threads: 2
[2021-11-20 13:37:37] Checking for CVMFS
[2021-11-20 13:37:37] Probing /cvmfs/atlas.cern.ch... OK
[2021-11-20 13:37:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2021-11-20 13:37:37] Running cvmfs_config stat atlas.cern.ch
[2021-11-20 13:37:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2021-11-20 13:37:37] 2.5.1.0 13013 256350 77844 96310 1 107 3871727 4096000 1 65024 1 345817466 99.9611 13544044 16839 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://137.138.63.73:3128 1
[2021-11-20 13:37:37] CVMFS is ok
[2021-11-20 13:37:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2021-11-20 13:37:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2021-11-20 13:37:37] Further information can be found at the LHC@home message board.
[2021-11-20 13:37:37] Using singularity image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2021-11-20 13:37:37] Checking for singularity binary...
[2021-11-20 13:37:37] which: no singularity in (/usr/sue/sbin:/usr/sue/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/opt/puppetlabs/bin:/root/bin)
[2021-11-20 13:37:37] Singularity is not installed, using version from CVMFS
[2021-11-20 13:37:37] Checking singularity works with /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2021-11-20 13:37:38] dcameron04.cern.ch
[2021-11-20 13:37:38] Singularity works
[2021-11-20 13:37:38] Set ATHENA_PROC_NUMBER=2
[2021-11-20 13:37:38] Starting ATLAS job with PandaID=5263923092
[2021-11-20 13:37:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/singularity/x86_64-el7/current/bin/singularity exec --pwd /root/boinc/slots/0 -B /cvmfs,/root /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2021-11-20 13:37:38] Job failed
[2021-11-20 13:37:38] ++ pwd
[2021-11-20 13:37:38] + export RUNTIME_CONFIG_DIR=/root/boinc/slots/0/
[2021-11-20 13:37:38] + RUNTIME_CONFIG_DIR=/root/boinc/slots/0/
[2021-11-20 13:37:38] + mv ATLAS.root_0 EVNT.04972714._000030.pool.root.1
[2021-11-20 13:37:38] + tar --strip-components=5 -xvf input.tar.gz
[2021-11-20 13:37:38] + umask 077
[2021-11-20 13:37:38] + echo 'Detecting resource accounting method available for the job.'
[2021-11-20 13:37:38] Detecting resource accounting method available for the job.
[2021-11-20 13:37:38] + JOB_ACCOUNTING=
[2021-11-20 13:37:38] + command -v arc-job-cgroup
[2021-11-20 13:37:38] + '[' -z '' ']'
[2021-11-20 13:37:38] + GNU_TIME=/usr/bin/time
[2021-11-20 13:37:38] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2021-11-20 13:37:38] Looking for /usr/bin/time tool for accounting measurements
[2021-11-20 13:37:38] + '[' '!' -z /usr/bin/time ']'
[2021-11-20 13:37:38] + /usr/bin/time --version
[2021-11-20 13:37:38] + echo 'GNU time found and will be used for job accounting.'
[2021-11-20 13:37:38] GNU time found and will be used for job accounting.
[2021-11-20 13:37:38] + JOB_ACCOUNTING=gnutime
[2021-11-20 13:37:38] + '[' -z gnutime ']'
[2021-11-20 13:37:38] + export PANDA_JSID=harvester-CERN_central_ACTA
[2021-11-20 13:37:38] + PANDA_JSID=harvester-CERN_central_ACTA
[2021-11-20 13:37:38] + export GTAG=http://aipanda404.cern.ch/data/jobs/2021-11-20/BOINC-TEST/5263923092.out
[2021-11-20 13:37:38] + GTAG=http://aipanda404.cern.ch/data/jobs/2021-11-20/BOINC-TEST/5263923092.out
[2021-11-20 13:37:38] + export PILOT_NOKILL=YES
[2021-11-20 13:37:38] + PILOT_NOKILL=YES
[2021-11-20 13:37:38] + export GRID_GLOBAL_JOBID=SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m
[2021-11-20 13:37:38] + GRID_GLOBAL_JOBID=SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m
[2021-11-20 13:37:38] + export GRID_GLOBAL_JOBURL=https://arc-boinc-04.cern.ch:443/arex/SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m
[2021-11-20 13:37:38] + GRID_GLOBAL_JOBURL=https://arc-boinc-04.cern.ch:443/arex/SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m
[2021-11-20 13:37:38] + export GRID_GLOBAL_JOBINTERFACE=org.ogf.glue.emies.activitycreation
[2021-11-20 13:37:38] + GRID_GLOBAL_JOBINTERFACE=org.ogf.glue.emies.activitycreation
[2021-11-20 13:37:38] + export GRID_GLOBAL_JOBHOST=arc-boinc-04.cern.ch
[2021-11-20 13:37:38] + GRID_GLOBAL_JOBHOST=arc-boinc-04.cern.ch
[2021-11-20 13:37:38] ++ pwd
[2021-11-20 13:37:38] + RUNTIME_JOB_DIR=/root/boinc/slots/0
[2021-11-20 13:37:38] + RUNTIME_JOB_STDIN=/dev/null
[2021-11-20 13:37:38] ++ pwd
[2021-11-20 13:37:38] + RUNTIME_JOB_STDOUT=/root/boinc/slots/0/4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log
[2021-11-20 13:37:38] ++ pwd
[2021-11-20 13:37:38] + RUNTIME_JOB_STDERR=/root/boinc/slots/0/4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log
[2021-11-20 13:37:38] ++ pwd
[2021-11-20 13:37:38] + RUNTIME_JOB_DIAG=/root/boinc/slots/0.diag
[2021-11-20 13:37:38] + '[' '!' -z '' ']'
[2021-11-20 13:37:38] + RUNTIME_LOCAL_SCRATCH_DIR=
[2021-11-20 13:37:38] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2021-11-20 13:37:38] + RUNTIME_FRONTEND_SEES_NODE=
[2021-11-20 13:37:38] + RUNTIME_NODE_SEES_FRONTEND=yes
[2021-11-20 13:37:38] + '[' '!' -z '' ']'
[2021-11-20 13:37:38] + '[' -z yes ']'
[2021-11-20 13:37:38] ++ pwd
[2021-11-20 13:37:38] + RUNTIME_JOB_DIAG=/root/boinc/slots/0/SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m.diag
[2021-11-20 13:37:38] + runtimeenvironments=
[2021-11-20 13:37:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2021-11-20 13:37:38] + RTE_function_0 1
[2021-11-20 13:37:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-11-20 13:37:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-11-20 13:37:38] + export BOINC_APP=ATLAS
[2021-11-20 13:37:38] + BOINC_APP=ATLAS
[2021-11-20 13:37:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-11-20 13:37:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-11-20 13:37:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-11-20 13:37:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-11-20 13:37:38] + '[' -z 1 ']'
[2021-11-20 13:37:38] + '[' 1 == 1 ']'
[2021-11-20 13:37:38] + shift
[2021-11-20 13:37:38] + '[' -e /root/boinc/slots/0/init_data.xml ']'
[2021-11-20 13:37:38] + grep '<use_http_proxy/>' /root/boinc/slots/0/init_data.xml
[2021-11-20 13:37:38] + '[' -e /root/boinc/slots/0/init_data.xml ']'
[2021-11-20 13:37:38] + grep '.cern.ch</domain_name>' /root/boinc/slots/0/init_data.xml
[2021-11-20 13:37:38] + export ATLAS_LOCAL_AREA=/root/boinc/slots/0/
[2021-11-20 13:37:38] + ATLAS_LOCAL_AREA=/root/boinc/slots/0/
[2021-11-20 13:37:38] + FRONTIER_SERVER_URLS='(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(serverurl=http://ccfrontier.in2p3.fr:23128/ccin2p3-AtlasFrontier)'
[2021-11-20 13:37:38] + FRONTIER_PROXY_URLS='(proxyurl=http://ca-proxy-atlas.cern.ch:3128)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://atlas-db-squid.grid.uio.no:3128)(proxyurl=http://dcache.ijs.si:3128)(proxyurl=http://atlasbpfrontier.cern.ch:3127)(proxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2021-11-20 13:37:38] + echo 'export FRONTIER_SERVER="(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(serverurl=http://ccfrontier.in2p3.fr:23128/ccin2p3-AtlasFrontier)(proxyurl=http://ca-proxy-atlas.cern.ch:3128)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://atlas-db-squid.grid.uio.no:3128)(proxyurl=http://dcache.ijs.si:3128)(proxyurl=http://atlasbpfrontier.cern.ch:3127)(proxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2021-11-20 13:37:38] + '[' 0 -ne 0 ']'
[2021-11-20 13:37:38] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2021-11-20 13:37:38] + '[' -f /etc/os-release ']'
[2021-11-20 13:37:38] +++ cat /etc/os-release
[2021-11-20 13:37:38] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2021-11-20 13:37:38] +++ NAME='CentOS Linux'
[2021-11-20 13:37:38] +++ VERSION='7 (Core)'
[2021-11-20 13:37:38] +++ ID=centos
[2021-11-20 13:37:38] +++ ID_LIKE='rhel fedora'
[2021-11-20 13:37:38] +++ VERSION_ID=7
[2021-11-20 13:37:38] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2021-11-20 13:37:38] +++ ANSI_COLOR='0;31'
[2021-11-20 13:37:38] +++ CPE_NAME=cpe:/o:centos:centos:7
[2021-11-20 13:37:38] +++ HOME_URL=https://www.centos.org/
[2021-11-20 13:37:38] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2021-11-20 13:37:38] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2021-11-20 13:37:38] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2021-11-20 13:37:38] +++ REDHAT_SUPPORT_PRODUCT=centos
[2021-11-20 13:37:38] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2021-11-20 13:37:38] ++ echo 'CentOS Linux 7 (Core)'
[2021-11-20 13:37:38] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2021-11-20 13:37:38] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2021-11-20 13:37:38] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2021-11-20 13:37:38] + HOME=/root/boinc/slots/0
[2021-11-20 13:37:38] + export HOME
[2021-11-20 13:37:38] + cd /root/boinc/slots/0
[2021-11-20 13:37:38] + '[' '!' -z '' ']'
[2021-11-20 13:37:38] + '[' -z '' ']'
[2021-11-20 13:37:38] ++ /bin/hostname -f
[2021-11-20 13:37:38] + nodename=dcameron04.cern.ch
[2021-11-20 13:37:38] + echo nodename=dcameron04.cern.ch
[2021-11-20 13:37:38] + echo Processors=1
[2021-11-20 13:37:38] + echo Benchmark=HEPSPEC:1.0
[2021-11-20 13:37:38] + executable=./runpilot2-wrapper.sh
[2021-11-20 13:37:38] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2021-11-20 13:37:38] ++ dd if=./runpilot2-wrapper.sh count=1
[2021-11-20 13:37:38] ++ head -n 1
[2021-11-20 13:37:38] + line1='#!/bin/bash'
[2021-11-20 13:37:38] ++ echo '#!/bin/bash'
[2021-11-20 13:37:38] ++ sed -n 's/^#! *//p'
[2021-11-20 13:37:38] + shebang=/bin/bash
[2021-11-20 13:37:38] ++ echo /bin/bash
[2021-11-20 13:37:38] ++ awk '{print $1}'
[2021-11-20 13:37:38] + interpreter=/bin/bash
[2021-11-20 13:37:38] + '[' /bin/bash = /usr/bin/env ']'
[2021-11-20 13:37:38] + '[' x/bin/bash = x ']'
[2021-11-20 13:37:38] + type /bin/bash
[2021-11-20 13:37:38] + '[' xgnutime = xgnutime ']'
[2021-11-20 13:37:38] + /usr/bin/time -o /root/boinc/slots/0/SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC-TEST -r BOINC-TEST -s BOINC-TEST -j rc_test2 --pilot-user ATLAS -w generic --job-type managed --resource-type SCORE -d -i RC --pythonversion 3 -z -t --piloturl local --mute
[2021-11-20 13:37:38] + RESULT=1
[2021-11-20 13:37:38] + sed -i -e /nodename=/d /root/boinc/slots/0/SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m.diag
[2021-11-20 13:37:38] ++ grep domain_name init_data.xml
[2021-11-20 13:37:38] ++ awk -F '>' '{print $2}'
[2021-11-20 13:37:38] ++ awk -F '<' '{print $1}'
[2021-11-20 13:37:38] ++ sed -e 's# #_#g'
[2021-11-20 13:37:38] + hostname=dcameron04.cern.ch
[2021-11-20 13:37:38] ++ grep user_name init_data.xml
[2021-11-20 13:37:38] ++ awk -F '>' '{print $2}'
[2021-11-20 13:37:38] ++ awk -F '<' '{print $1}'
[2021-11-20 13:37:38] ++ sed -e 's# #_#g'
[2021-11-20 13:37:38] + username=David_Cameron
[2021-11-20 13:37:38] + nodename=David_Cameron@dcameron04.cern.ch
[2021-11-20 13:37:38] + echo nodename=David_Cameron@dcameron04.cern.ch
[2021-11-20 13:37:38] + '[' -n 2 ']'
[2021-11-20 13:37:38] + sed -i -e s/Processors=1/Processors=2/ /root/boinc/slots/0/SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m.diag
[2021-11-20 13:37:38] + echo exitcode=1
[2021-11-20 13:37:38] + runtimeenvironments=
[2021-11-20 13:37:38] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2021-11-20 13:37:38] + RTE_function_0 2
[2021-11-20 13:37:38] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-11-20 13:37:38] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome-dev
[2021-11-20 13:37:38] + export BOINC_APP=ATLAS
[2021-11-20 13:37:38] + BOINC_APP=ATLAS
[2021-11-20 13:37:38] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-11-20 13:37:38] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2021-11-20 13:37:38] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-11-20 13:37:38] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2021-11-20 13:37:38] + '[' -z 2 ']'
[2021-11-20 13:37:38] + '[' 2 == 1 ']'
[2021-11-20 13:37:38] + '[' 0 -ne 0 ']'
[2021-11-20 13:37:38] + echo 'zip all output files'
[2021-11-20 13:37:38] + flist='*.diag '
[2021-11-20 13:37:38] + for f in ./heartbeat.json ./output.list ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./gmlog
[2021-11-20 13:37:38] + '[' -e ./heartbeat.json ']'
[2021-11-20 13:37:38] + for f in ./heartbeat.json ./output.list ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./gmlog
[2021-11-20 13:37:38] + '[' -e ./output.list ']'
[2021-11-20 13:37:38] + for f in ./heartbeat.json ./output.list ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./gmlog
[2021-11-20 13:37:38] + '[' -e ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ']'
[2021-11-20 13:37:38] + flist='*.diag  ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log'
[2021-11-20 13:37:38] + for f in ./heartbeat.json ./output.list ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./gmlog
[2021-11-20 13:37:38] + '[' -e ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ']'
[2021-11-20 13:37:38] + flist='*.diag  ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log'
[2021-11-20 13:37:38] + for f in ./heartbeat.json ./output.list ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./gmlog
[2021-11-20 13:37:38] + '[' -e ./gmlog ']'
[2021-11-20 13:37:38] + '[' -f output.list ']'
[2021-11-20 13:37:38] + tar cvf result.tar.gz SuWLDmBAe8zn7Olcko1bjSoqABFKDmABFKDmZr2WDmSTGKDmUMHe0m.diag ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log
[2021-11-20 13:37:38] + '[' xgnutime = xcgroup ']'
[2021-11-20 13:37:38] + '[' -n '' ']'
[2021-11-20 13:37:38] + '[' -n '' ']'
[2021-11-20 13:37:38] + echo exitcode=1
[2021-11-20 13:37:38] + exit 1
[2021-11-20 13:37:38] ./runtime_log
[2021-11-20 13:37:38] ./runtime_log.err
[2021-11-20 13:37:38] ./4e004e19-6708-41cd-9664-7fc0c7001e37_86515.job.log
[2021-11-20 13:37:38] ./pilot3/pilot/util/realtimelogger.py
13:47:39 (5782): run_atlas exited; CPU time 0.336990
13:47:39 (5782): app exit status: 0x1
13:47:39 (5782): called boinc_finish(195)

</stderr_txt>
]]>

©2024 CERN