Name qvrMDm5EBi1n7Olcko1bjSoqABFKDmABFKDmKFbSDmphIKDmoUFyVo_0
Workunit 2204646
Created 16 Aug 2022, 12:52:57 UTC
Sent 16 Aug 2022, 12:54:37 UTC
Report deadline 23 Aug 2022, 12:54:37 UTC
Received 16 Aug 2022, 13:00:59 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4688
Run time 6 min 5 sec
CPU time 5 min 5 sec
Validate state Valid
Credit 1.69
Device peak FLOPS 2.00 GFLOPS
Application version ATLAS Simulation v1.22 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.42 GB
Peak swap size 2.12 GB
Peak disk usage 83.55 MB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:54:43 (87862): wrapper (7.7.26015): starting
14:54:43 (87862): wrapper: running run_atlas (--nthreads 2)
[2022-08-16 14:54:43] Arguments: --nthreads 2
[2022-08-16 14:54:43] Threads: 2
[2022-08-16 14:54:43] Checking for CVMFS
[2022-08-16 14:54:45] Probing /cvmfs/atlas.cern.ch... OK
[2022-08-16 14:54:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2022-08-16 14:54:45] Running cvmfs_config stat atlas.cern.ch
[2022-08-16 14:54:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2022-08-16 14:54:45] 2.9.4.0 88058 0 29480 108239 4 1 1315296 4096000 0 130560 0 0 0.000 667 2077 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://137.138.148.246:3128 1
[2022-08-16 14:54:45] CVMFS is ok
[2022-08-16 14:54:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2022-08-16 14:54:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2022-08-16 14:54:45] Further information can be found at the LHC@home message board.
[2022-08-16 14:54:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2022-08-16 14:54:45] Checking for apptainer binary...
[2022-08-16 14:54:45] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2022-08-16 14:54:45] apptainer is not installed, using version from CVMFS
[2022-08-16 14:54:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2022-08-16 14:54:45] localhost.localdomain
[2022-08-16 14:54:45] apptainer works
[2022-08-16 14:54:45] Set ATHENA_PROC_NUMBER=2
[2022-08-16 14:54:45] Starting ATLAS job with PandaID=5564286951
[2022-08-16 14:54:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2022-08-16 15:00:46]  *** The last 200 lines of the pilot log: ***
[2022-08-16 15:00:46]  allow_wan=False
[2022-08-16 15:00:46]  checksum={'adler32': 'e19b1d2e'}
[2022-08-16 15:00:46]  dataset=hc_test.gangarbt.hc20248563.tid1184.BOINC-TEST.143
[2022-08-16 15:00:46]  ddm_activity=['write_lan', 'write_wan']
[2022-08-16 15:00:46]  ddmendpoint=NDGF-T1_DATADISK
[2022-08-16 15:00:46]  direct_access_lan=False
[2022-08-16 15:00:46]  direct_access_wan=False
[2022-08-16 15:00:46]  domain=
[2022-08-16 15:00:46]  filesize=1581585
[2022-08-16 15:00:46]  filetype=output
[2022-08-16 15:00:46]  guid=4434F786-5678-384B-9DC1-1B90B39993D3
[2022-08-16 15:00:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2022-08-16 15:00:46]  is_tar=False
[2022-08-16 15:00:46]  lfn=output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root
[2022-08-16 15:00:46]  mtime=0
[2022-08-16 15:00:46]  protocol_id=None
[2022-08-16 15:00:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2022-08-16 15:00:46]  replicas=None
[2022-08-16 15:00:46]  scope=hc_test
[2022-08-16 15:00:46]  status=None
[2022-08-16 15:00:46]  status_code=0
[2022-08-16 15:00:46]  storage_token=
[2022-08-16 15:00:46]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-5564286951/output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root
[2022-08-16 15:00:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/11/0e/output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root
[2022-08-16 15:00:46]  workdir=None
[2022-08-16 15:00:46] ]
[2022-08-16 15:00:46] 2022-08-16 12:59:54,214 | INFO     | transferring file output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root from /var/lib/boinc/slots/0/PanDA_Pilot-5564286951/output.1.3bd60fdf-d3fd-4d47-97c6
[2022-08-16 15:00:46] 2022-08-16 12:59:54,214 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-5564286951/output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root /var/lib/boinc/slots
[2022-08-16 15:00:46] 2022-08-16 12:59:54,231 | INFO     | Adding to output.list: output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/11/0e/output.1.
[2022-08-16 15:00:46] 2022-08-16 12:59:54,231 | INFO     | executing command: ps aux -q 92684
[2022-08-16 15:00:46] 2022-08-16 12:59:54,248 | INFO     | summary of transferred files:
[2022-08-16 15:00:46] 2022-08-16 12:59:54,248 | INFO     |  -- lfn=output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root, status_code=0, status=transferred
[2022-08-16 15:00:46] 2022-08-16 12:59:54,248 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0/PanDA_Pilot-5564286951
[2022-08-16 15:00:46] 2022-08-16 12:59:54,269 | WARNING  | failed to remove directory: /var/lib/boinc/slots/0/PanDA_Pilot-5564286951/output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root_001 (2, No such file or dir
[2022-08-16 15:00:46] 2022-08-16 12:59:54,269 | WARNING  | failed to remove directory: /var/lib/boinc/slots/0/PanDA_Pilot-5564286951/output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root_002 (2, No such file or dir
[2022-08-16 15:00:46] 2022-08-16 12:59:54,270 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0/PanDA_Pilot-5564286951
[2022-08-16 15:00:46] 2022-08-16 12:59:54,283 | INFO     | will create archive /var/lib/boinc/slots/0/3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz
[2022-08-16 15:00:46] 2022-08-16 12:59:54,284 | INFO     | executing command: pwd;tar cvfz /var/lib/boinc/slots/0/3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz tarball_PandaJob_5564286951_BOINC-TEST --dereferenc
[2022-08-16 15:00:46] 2022-08-16 12:59:54,330 | INFO     | copied /var/lib/boinc/slots/0/3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz to /var/lib/boinc/slots/0/PanDA_Pilot-5564286951
[2022-08-16 15:00:46] 2022-08-16 12:59:54,330 | INFO     | prepare to stage-out 1 log file(s)
[2022-08-16 15:00:46] 2022-08-16 12:59:54,330 | INFO     | stage-out will not be done in a container
[2022-08-16 15:00:46] 2022-08-16 12:59:54,330 | INFO     | configured copytools per activity: acopytools={'pr': ['mv'], 'pw': ['mv'], 'read_lan': ['mv'], 'write_lan': ['mv'], 'default': ['rucio']}
[2022-08-16 15:00:46] 2022-08-16 12:59:54,330 | INFO     | [prepare_destinations][pl]: allowed (local) destinations: ['NDGF-T1_DATADISK']
[2022-08-16 15:00:46] 2022-08-16 12:59:54,331 | INFO     | [prepare_destinations][pl]: resolved default destination ddm=NDGF-T1_DATADISK
[2022-08-16 15:00:46] 2022-08-16 12:59:54,331 | INFO     | trying to use copytool=mv for activity=['pl', 'pw', 'w', 'default']
[2022-08-16 15:00:46] 2022-08-16 12:59:54,389 | INFO     | Resolved protocol to be used for transfer: '{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}': l
[2022-08-16 15:00:46] 2022-08-16 12:59:54,390 | INFO     | ready to transfer (stage-out) files: [ accessmode=
[2022-08-16 15:00:46]  activity=['pl', 'pw', 'w', 'default']
[2022-08-16 15:00:46]  allow_lan=True
[2022-08-16 15:00:46]  allow_wan=False
[2022-08-16 15:00:46]  checksum={'adler32': 'e625677d'}
[2022-08-16 15:00:46]  dataset=hc_test.gangarbt.hc20248563.tid1184.BOINC-TEST.143
[2022-08-16 15:00:46]  ddm_activity=['write_lan', 'write_wan']
[2022-08-16 15:00:46]  ddmendpoint=NDGF-T1_DATADISK
[2022-08-16 15:00:46]  direct_access_lan=False
[2022-08-16 15:00:46]  direct_access_wan=False
[2022-08-16 15:00:46]  domain=
[2022-08-16 15:00:46]  filesize=426689
[2022-08-16 15:00:46]  filetype=log
[2022-08-16 15:00:46]  guid=d0f338a0-1bce-4357-a6b2-8f79ef8da5ac
[2022-08-16 15:00:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2022-08-16 15:00:46]  is_tar=False
[2022-08-16 15:00:46]  lfn=3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz
[2022-08-16 15:00:46]  mtime=0
[2022-08-16 15:00:46]  protocol_id=None
[2022-08-16 15:00:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2022-08-16 15:00:46]  replicas=None
[2022-08-16 15:00:46]  scope=hc_test
[2022-08-16 15:00:46]  status=None
[2022-08-16 15:00:46]  status_code=0
[2022-08-16 15:00:46]  storage_token=
[2022-08-16 15:00:46]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-5564286951/3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz
[2022-08-16 15:00:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/54/95/3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz
[2022-08-16 15:00:46]  workdir=None
[2022-08-16 15:00:46] ]
[2022-08-16 15:00:46] 2022-08-16 12:59:54,413 | INFO     | transferring file 3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz from /var/lib/boinc/slots/0/PanDA_Pilot-5564286951/3bd60fdf-d3fd-4d47-97c6-ccda63394225_
[2022-08-16 15:00:46] 2022-08-16 12:59:54,413 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-5564286951/3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz /var/lib/boinc/slots/0/3b
[2022-08-16 15:00:46] 2022-08-16 12:59:54,429 | INFO     | Adding to output.list: 3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/54/95/3bd60fdf-d3fd-
[2022-08-16 15:00:46] 2022-08-16 12:59:54,430 | INFO     | executing command: ps aux -q 92684
[2022-08-16 15:00:46] 2022-08-16 12:59:54,446 | INFO     | summary of transferred files:
[2022-08-16 15:00:46] 2022-08-16 12:59:54,447 | INFO     |  -- lfn=3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz, status_code=0, status=transferred
[2022-08-16 15:00:46] 2022-08-16 12:59:54,447 | INFO     | stage-out finished correctly
[2022-08-16 15:00:46] 2022-08-16 12:59:56,367 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2022-08-16 15:00:46] 2022-08-16 12:59:56,517 | INFO     | job 5564286951 has state=finished
[2022-08-16 15:00:46] 2022-08-16 12:59:56,518 | INFO     | preparing for final server update for job 5564286951 in state='finished'
[2022-08-16 15:00:46] 2022-08-16 12:59:56,518 | INFO     | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /var/lib/boinc/slots/0/PanDA_Pilot-5564286951
[2022-08-16 15:00:46] 2022-08-16 12:59:58,454 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2022-08-16 15:00:46] 2022-08-16 12:59:58,455 | INFO     | job 5564286951 has finished - writing final server update
[2022-08-16 15:00:46] 2022-08-16 12:59:58,456 | INFO     | will not add max space = -35626372 B to job metrics
[2022-08-16 15:00:46] 2022-08-16 12:59:58,458 | WARNING  | wrong length of table data, x=[1660654518.0, 1660654579.0, 1660654640.0, 1660654701.0, 1660654762.0], y=[3293.0, 1172548.0, 1775675.0, 1798307.0, 797318.0] (must b
[2022-08-16 15:00:46] 2022-08-16 12:59:58,460 | INFO     | total number of processed events: 2 (read)
[2022-08-16 15:00:46] 2022-08-16 12:59:58,461 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-16 15:00:46] 2022-08-16 12:59:58,591 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-5564286951/memory_monitor_summary.json (trf name=prmon)
[2022-08-16 15:00:46] 2022-08-16 12:59:58,595 | INFO     | extracted standard info from prmon json
[2022-08-16 15:00:46] 2022-08-16 12:59:58,596 | INFO     | extracted standard memory fields from prmon json
[2022-08-16 15:00:46] 2022-08-16 12:59:58,597 | INFO     | ..............................
[2022-08-16 15:00:46] 2022-08-16 12:59:58,597 | INFO     | . Timing measurements:
[2022-08-16 15:00:46] 2022-08-16 12:59:58,598 | INFO     | . get job = 0 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,598 | INFO     | . initial setup = 1 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,598 | INFO     | . payload setup = 6 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,598 | INFO     | . total setup = 7 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,599 | INFO     | . stage-in = 0 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,599 | INFO     | . payload execution = 276 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,599 | INFO     | . stage-out = 0 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,599 | INFO     | ..............................
[2022-08-16 15:00:46] 2022-08-16 12:59:58,727 | INFO     | 
[2022-08-16 15:00:46] 2022-08-16 12:59:58,727 | INFO     | job summary report
[2022-08-16 15:00:46] 2022-08-16 12:59:58,727 | INFO     | --------------------------------------------------
[2022-08-16 15:00:46] 2022-08-16 12:59:58,728 | INFO     | PanDA job id: 5564286951
[2022-08-16 15:00:46] 2022-08-16 12:59:58,728 | INFO     | task id: NULL
[2022-08-16 15:00:46] 2022-08-16 12:59:58,728 | INFO     | errors: (none)
[2022-08-16 15:00:46] 2022-08-16 12:59:58,728 | INFO     | status: LOG_TRANSFER = DONE 
[2022-08-16 15:00:46] 2022-08-16 12:59:58,728 | INFO     | pilot state: finished 
[2022-08-16 15:00:46] 2022-08-16 12:59:58,728 | INFO     | transexitcode: 0
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | exeerrorcode: 0
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | exeerrordiag: 
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | exitcode: 0
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | exitmsg: OK
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | cpuconsumptiontime: 367 s
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | nevents: 2
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | neventsw: 0
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | pid: 95745
[2022-08-16 15:00:46] 2022-08-16 12:59:58,729 | INFO     | pgrp: 95745
[2022-08-16 15:00:46] 2022-08-16 12:59:58,730 | INFO     | corecount: 2
[2022-08-16 15:00:46] 2022-08-16 12:59:58,730 | INFO     | event service: False
[2022-08-16 15:00:46] 2022-08-16 12:59:58,730 | INFO     | sizes: {0: 2645397, 11: 2645397, 286: 2678271, 288: 2678271, 290: 2679173}
[2022-08-16 15:00:46] 2022-08-16 12:59:58,730 | INFO     | --------------------------------------------------
[2022-08-16 15:00:46] 2022-08-16 12:59:58,730 | INFO     | 
[2022-08-16 15:00:46] 2022-08-16 12:59:58,730 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue jobs had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue payloads had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue data_in had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue data_out had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue current_data_in had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,760 | INFO     | queue completed_jobids has 1 job(s)
[2022-08-16 15:00:46] 2022-08-16 12:59:58,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2022-08-16 15:00:46] 2022-08-16 12:59:58,761 | INFO     | job 5564286951 has completed (purged errors)
[2022-08-16 15:00:46] 2022-08-16 12:59:58,761 | INFO     | overall cleanup function is called
[2022-08-16 15:00:46] 2022-08-16 12:59:59,764 | INFO     | --- collectZombieJob: --- 10, [95745]
[2022-08-16 15:00:46] 2022-08-16 12:59:59,764 | INFO     | zombie collector trying to kill pid 95745
[2022-08-16 15:00:46] 2022-08-16 12:59:59,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2022-08-16 15:00:46] 2022-08-16 13:00:00,772 | INFO     | collected zombie processes
[2022-08-16 15:00:46] 2022-08-16 13:00:00,772 | INFO     | will now attempt to kill all subprocesses of pid=95745
[2022-08-16 15:00:46] 2022-08-16 13:00:00,824 | INFO     | process IDs to be killed: [95745] (in reverse order)
[2022-08-16 15:00:46] 2022-08-16 13:00:00,850 | WARNING  | found no corresponding commands to process id(s)
[2022-08-16 15:00:46] 2022-08-16 13:00:00,851 | INFO     | Do not look for orphan processes in BOINC jobs
[2022-08-16 15:00:46] 2022-08-16 13:00:00,851 | INFO     | ready for new job
[2022-08-16 15:00:46] 2022-08-16 13:00:00,851 | INFO     | pilot has finished for previous job - re-establishing logging
[2022-08-16 15:00:46] 2022-08-16 13:00:00,851 | INFO     | ***************************************
[2022-08-16 15:00:46] 2022-08-16 13:00:00,851 | INFO     | ***  PanDA Pilot version 3.3.3 (1)  ***
[2022-08-16 15:00:46] 2022-08-16 13:00:00,851 | INFO     | ***************************************
[2022-08-16 15:00:46] 2022-08-16 13:00:00,851 | INFO     | 
[2022-08-16 15:00:46] 2022-08-16 13:00:00,852 | INFO     | pilot is running in a VM
[2022-08-16 15:00:46] 2022-08-16 13:00:00,852 | INFO     | architecture information:
[2022-08-16 15:00:46] 2022-08-16 13:00:00,907 | INFO     | 
[2022-08-16 15:00:46] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2022-08-16 15:00:46] Distributor ID:	CentOS
[2022-08-16 15:00:46] Description:	CentOS Linux release 7.9.2009 (Core)
[2022-08-16 15:00:46] Release:	7.9.2009
[2022-08-16 15:00:46] Codename:	Core
[2022-08-16 15:00:46] 2022-08-16 13:00:00,908 | INFO     | ***************************************
[2022-08-16 15:00:46] 2022-08-16 13:00:01,410 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2022-08-16 15:00:46] 2022-08-16 13:00:01,439 | INFO     | sufficient remaining disk space (16948133888 B)
[2022-08-16 15:00:46] 2022-08-16 13:00:01,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2022-08-16 15:00:46] 2022-08-16 13:00:01,629 | INFO     | [payload] execute_payloads thread has finished
[2022-08-16 15:00:46] 2022-08-16 13:00:02,149 | INFO     | [monitor] control thread has ended
[2022-08-16 15:00:46] 2022-08-16 13:00:02,151 | INFO     | [payload] validate_post thread has finished
[2022-08-16 15:00:46] 2022-08-16 13:00:02,509 | INFO     | [payload] validate_pre thread has finished
[2022-08-16 15:00:46] 2022-08-16 13:00:02,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2022-08-16 15:00:46] 2022-08-16 13:00:02,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2022-08-16 15:00:46] 2022-08-16 13:00:02,986 | INFO     | [payload] failed_post thread has finished
[2022-08-16 15:00:46] 2022-08-16 13:00:03,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2022-08-16 15:00:46] 2022-08-16 13:00:11,490 | INFO     | [payload] run_realtimelog thread has finished
[2022-08-16 15:00:46] 2022-08-16 13:00:45,740 | WARNING  | no jobs in monitored_payloads queue (waited for 72 s)
[2022-08-16 15:00:46] 2022-08-16 13:00:46,379 | INFO     | end of generic workflow (traces error code: 0)
[2022-08-16 15:00:46] 2022-08-16 13:00:46,380 | INFO     | traces error code: 0
[2022-08-16 15:00:46] 2022-08-16 13:00:46,380 | INFO     | pilot has finished
[2022-08-16 15:00:46] 2022-08-16 13:00:46,425 [wrapper] ==== pilot stdout END ====
[2022-08-16 15:00:46] 2022-08-16 13:00:46,428 [wrapper] ==== wrapper stdout RESUME ====
[2022-08-16 15:00:46] 2022-08-16 13:00:46,431 [wrapper] pilotpid: 92684
[2022-08-16 15:00:46] 2022-08-16 13:00:46,434 [wrapper] Pilot exit status: 0
[2022-08-16 15:00:46] 2022-08-16 13:00:46,444 [wrapper] pandaids: 5564286951
[2022-08-16 15:00:46] 2022-08-16 13:00:46,450 [wrapper] apfmon messages muted
[2022-08-16 15:00:46] 2022-08-16 13:00:46,452 [wrapper] Test setup, not cleaning
[2022-08-16 15:00:46] 2022-08-16 13:00:46,455 [wrapper] ==== wrapper stdout END ====
[2022-08-16 15:00:46] 2022-08-16 13:00:46,458 [wrapper] ==== wrapper stderr END ====
[2022-08-16 15:00:46] 2022-08-16 13:00:46,464 [wrapper] wrapperexiting ec=0, duration=360
[2022-08-16 15:00:46] 2022-08-16 13:00:46,467 [wrapper] apfmon messages muted
[2022-08-16 15:00:46]  *** Error codes and diagnostics ***
[2022-08-16 15:00:46]     "exeErrorCode": 0,
[2022-08-16 15:00:46]     "exeErrorDiag": "",
[2022-08-16 15:00:46]     "pilotErrorCode": 0,
[2022-08-16 15:00:46]     "pilotErrorDiag": "",
[2022-08-16 15:00:46]  *** Listing of results directory ***
[2022-08-16 15:00:46] total 46396
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc   358966 Aug 16 14:24 pilot3.tar.gz
[2022-08-16 15:00:46] -rwx------. 1 boinc boinc    27162 Aug 16 14:52 runpilot2-wrapper.sh
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc     4534 Aug 16 14:52 queuedata.json
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc      107 Aug 16 14:54 wrapper_26015_x86_64-pc-linux-gnu
[2022-08-16 15:00:46] -rwxr-xr-x. 1 boinc boinc     7811 Aug 16 14:54 run_atlas
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc      112 Aug 16 14:54 job.xml
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc     6109 Aug 16 14:54 init_data.xml
[2022-08-16 15:00:46] -rw-r--r--. 2 boinc boinc 39611081 Aug 16 14:54 EVNT.04972714._000022.pool.root.1
[2022-08-16 15:00:46] -rw-r--r--. 2 boinc boinc    16636 Aug 16 14:54 start_atlas.sh
[2022-08-16 15:00:46] drwxrwx--x. 2 boinc boinc       68 Aug 16 14:54 shared
[2022-08-16 15:00:46] -rw-r--r--. 2 boinc boinc   369740 Aug 16 14:54 input.tar.gz
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc        0 Aug 16 14:54 boinc_lockfile
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc     2745 Aug 16 14:54 pandaJob.out
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc  1020921 Aug 16 14:54 agis_schedconf.cvmfs.json
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc  1776900 Aug 16 14:54 agis_ddmendpoints.agis.ALL.json
[2022-08-16 15:00:46] drwx------. 4 boinc boinc     4096 Aug 16 14:54 pilot3
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc      532 Aug 16 14:58 boinc_task_state.xml
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc  1581585 Aug 16 14:59 output.1.3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.pool.root
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc      999 Aug 16 14:59 memory_monitor_summary.json
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc   426689 Aug 16 14:59 3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log.tgz
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc     8586 Aug 16 14:59 heartbeat.json
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc     8192 Aug 16 15:00 boinc_mmap_file
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc       24 Aug 16 15:00 wrapper_checkpoint.txt
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc     2028 Aug 16 15:00 pilotlog.txt
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc    67721 Aug 16 15:00 3bd60fdf-d3fd-4d47-97c6-ccda63394225_89817.1.job.log
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc      464 Aug 16 15:00 output.list
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc      748 Aug 16 15:00 runtime_log
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc  2099200 Aug 16 15:00 result.tar.gz
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc     9517 Aug 16 15:00 runtime_log.err
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc      575 Aug 16 15:00 qvrMDm5EBi1n7Olcko1bjSoqABFKDmABFKDmKFbSDmphIKDmoUFyVo.diag
[2022-08-16 15:00:46] -rw-r--r--. 1 boinc boinc    21395 Aug 16 15:00 stderr.txt
[2022-08-16 15:00:46] HITS file was successfully produced:
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc 1581585 Aug 16 14:59 shared/HITS.pool.root.1
[2022-08-16 15:00:46]  *** Contents of shared directory: ***
[2022-08-16 15:00:46] total 42668
[2022-08-16 15:00:46] -rw-r--r--. 2 boinc boinc 39611081 Aug 16 14:54 ATLAS.root_0
[2022-08-16 15:00:46] -rw-r--r--. 2 boinc boinc    16636 Aug 16 14:54 start_atlas.sh
[2022-08-16 15:00:46] -rw-r--r--. 2 boinc boinc   369740 Aug 16 14:54 input.tar.gz
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc  1581585 Aug 16 14:59 HITS.pool.root.1
[2022-08-16 15:00:46] -rw-------. 1 boinc boinc  2099200 Aug 16 15:00 result.tar.gz
15:00:47 (87862): run_atlas exited; CPU time 353.202922
15:00:47 (87862): called boinc_finish(0)

</stderr_txt>
]]>


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