| Name | 8RQMDmbKLk1n7Olcko1bjSoqABFKDmABFKDmKFbSDmIyIKDmnrnkVo_0 |
| Workunit | 2205579 |
| Created | 22 Aug 2022, 12:03:35 UTC |
| Sent | 22 Aug 2022, 12:12:22 UTC |
| Report deadline | 29 Aug 2022, 12:12:22 UTC |
| Received | 22 Aug 2022, 12:17:19 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 4636 |
| Run time | 4 min 36 sec |
| CPU time | 8 sec |
| Validate state | Valid |
| Credit | 19.75 |
| Device peak FLOPS | 30.89 GFLOPS |
| Application version | ATLAS Simulation v1.24 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 62.47 MB |
| Peak swap size | 1.42 GB |
| Peak disk usage | 78.48 MB |
Stderr output
<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
14:12:31 (2498264): wrapper (7.7.26015): starting
14:12:31 (2498264): wrapper: running run_atlas (--nthreads 4)
[2022-08-22 14:12:31] Arguments: --nthreads 4
[2022-08-22 14:12:31] Threads: 4
[2022-08-22 14:12:31] Checking for CVMFS
[2022-08-22 14:12:31] Probing /cvmfs/atlas.cern.ch... OK
[2022-08-22 14:12:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2022-08-22 14:12:31] Running cvmfs_config stat atlas.cern.ch
[2022-08-22 14:12:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2022-08-22 14:12:31] 2.8.2.0 2497526 0 26760 108507 3 5 3118816 4096000 20 130560 0 1067 99.907 664 2220 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://137.138.63.73:3128 1
[2022-08-22 14:12:31] CVMFS is ok
[2022-08-22 14:12:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2022-08-22 14:12:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2022-08-22 14:12:31] Further information can be found at the LHC@home message board.
[2022-08-22 14:12:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2022-08-22 14:12:31] Checking for apptainer binary...
[2022-08-22 14:12:31] Using apptainer found in PATH at /usr/bin/apptainer
[2022-08-22 14:12:31] Running /usr/bin/apptainer --version
[2022-08-22 14:12:32] apptainer version 1.1.0-rc.2
[2022-08-22 14:12:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2022-08-22 14:12:32] pcoslo6
[2022-08-22 14:12:32] apptainer works
[2022-08-22 14:12:32] Set ATHENA_PROC_NUMBER=4
[2022-08-22 14:12:32] Starting ATLAS job with PandaID=5515971838
[2022-08-22 14:12:32] Try creating a directory in /tmp
[2022-08-22 14:12:32] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 mktemp /tmp/tmp.XXXXX
[2022-08-22 14:12:32] /usr/bin/mktemp: failed to create file via template '/tmp/tmp.XXXXX': Read-only file system
[2022-08-22 14:12:32] mktemp /tmp failed
[2022-08-22 14:12:32] Try creating a directory in /var/tmp
[2022-08-22 14:12:32] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 mktemp /var/tmp/tmp.XXXXX
[2022-08-22 14:12:32] /usr/bin/mktemp: failed to create file via template '/var/tmp/tmp.XXXXX': Read-only file system
[2022-08-22 14:12:32] mktemp /var/tmp failed
[2022-08-22 14:12:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2022-08-22 14:17:04] *** The last 200 lines of the pilot log: ***
[2022-08-22 14:17:04] inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2022-08-22 14:17:04] is_tar=False
[2022-08-22 14:17:04] lfn=8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz
[2022-08-22 14:17:04] mtime=0
[2022-08-22 14:17:04] protocol_id=None
[2022-08-22 14:17:04] protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2022-08-22 14:17:04] replicas=None
[2022-08-22 14:17:04] scope=hc_test
[2022-08-22 14:17:04] status=None
[2022-08-22 14:17:04] status_code=0
[2022-08-22 14:17:04] storage_token=
[2022-08-22 14:17:04] surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz
[2022-08-22 14:17:04] turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/de/d1/8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz
[2022-08-22 14:17:04] workdir=None
[2022-08-22 14:17:04] ]
[2022-08-22 14:17:04] 2022-08-22 12:14:17,026 | INFO | transferring file 8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz from /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/8a6e718d-c92a-4ece
[2022-08-22 14:17:04] 2022-08-22 12:14:17,026 | INFO | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz /var/l
[2022-08-22 14:17:04] 2022-08-22 12:14:17,035 | INFO | Adding to output.list: 8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/de/d1/8a
[2022-08-22 14:17:04] 2022-08-22 12:14:17,036 | INFO | executing command: ps aux -q 2507082
[2022-08-22 14:17:04] 2022-08-22 12:14:17,048 | INFO | summary of transferred files:
[2022-08-22 14:17:04] 2022-08-22 12:14:17,048 | INFO | -- lfn=8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz, status_code=0, status=transferred
[2022-08-22 14:17:04] 2022-08-22 12:14:17,048 | INFO | stage-out finished correctly
[2022-08-22 14:17:04] 2022-08-22 12:14:17,104 | INFO | finished stage-out (of log) for failed payload
[2022-08-22 14:17:04] 2022-08-22 12:14:17,765 | INFO | job 5515971838 has state=failed
[2022-08-22 14:17:04] 2022-08-22 12:14:17,766 | INFO | preparing for final server update for job 5515971838 in state='failed'
[2022-08-22 14:17:04] 2022-08-22 12:14:59,959 | INFO | 142.6437647342682s have passed since pilot start
[2022-08-22 14:17:04] 2022-08-22 12:15:00,935 | INFO | monitor loop #1: job 0:5515971838 is in state 'failed'
[2022-08-22 14:17:04] 2022-08-22 12:15:00,935 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2022-08-22 14:17:04] 2022-08-22 12:16:02,543 | INFO | monitor loop #2: job 0:5515971838 is in state 'failed'
[2022-08-22 14:17:04] 2022-08-22 12:16:02,543 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2022-08-22 14:17:04] 2022-08-22 12:16:13,195 | INFO | proceeding with final server update
[2022-08-22 14:17:04] 2022-08-22 12:16:13,196 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2022-08-22 14:17:04] 2022-08-22 12:16:13,196 | INFO | job 5515971838 has failed - writing final server update
[2022-08-22 14:17:04] 2022-08-22 12:16:13,196 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | WARNING | found no stored workdir sizes
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | INFO | will not add max space = 0 B to job metrics
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | INFO | payload/TRF did not report the number of read events
[2022-08-22 14:17:04] 2022-08-22 12:16:13,217 | INFO | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | neither /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/memory_monitor_summary.json, nor /var/lib/boinc-client/slots/1/memory_monitor_summary.json exist
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | WARNING | file does not exist either: /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/memory_monitor_output.txt
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | memory summary dictionary not yet available
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | ..............................
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . Timing measurements:
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . get job = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . initial setup = 21 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . payload setup = 1 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . total setup = 22 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . stage-in = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . payload execution = 2 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . stage-out = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | ..............................
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | building log extracts (sent to the server as 'pilotLog')
[2022-08-22 14:17:04] 2022-08-22 12:16:13,271 | INFO | executing command: tail -n 20 /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/pilotlog.txt
[2022-08-22 14:17:04] 2022-08-22 12:16:13,277 | WARNING | detected the following tail of warning/fatal messages in the pilot log:
[2022-08-22 14:17:04] - Log from pilotlog.txt -
[2022-08-22 14:17:04] 2022-08-22 12:16:13,196 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | WARNING | found no stored workdir sizes
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | INFO | will not add max space = 0 B to job metrics
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | INFO | payload/TRF did not report the number of read events
[2022-08-22 14:17:04] 2022-08-22 12:16:13,217 | INFO | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | neither /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/memory_monitor_summary.json, nor /var/lib/boinc-client/slots/1/memory_monitor_summary.json exist
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | WARNING | file does not exist either: /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/memory_monitor_output.txt
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | memory summary dictionary not yet available
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | ..............................
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . Timing measurements:
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . get job = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . initial setup = 21 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . payload setup = 1 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . total setup = 22 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . stage-in = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . payload execution = 2 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . stage-out = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | ..............................
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | building log extracts (sent to the server as 'pilotLog')
[2022-08-22 14:17:04] 2022-08-22 12:16:13,271 | INFO | executing command: tail -n 20 /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/pilotlog.txt
[2022-08-22 14:17:04] 2022-08-22 12:16:13,277 | WARNING |
[2022-08-22 14:17:04] [begin log extracts]
[2022-08-22 14:17:04] - Log from pilotlog.txt -
[2022-08-22 14:17:04] 2022-08-22 12:16:13,196 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | WARNING | found no stored workdir sizes
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | INFO | will not add max space = 0 B to job metrics
[2022-08-22 14:17:04] 2022-08-22 12:16:13,197 | INFO | payload/TRF did not report the number of read events
[2022-08-22 14:17:04] 2022-08-22 12:16:13,217 | INFO | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | neither /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/memory_monitor_summary.json, nor /var/lib/boinc-client/slots/1/memory_monitor_summary.json exist
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | WARNING | file does not exist either: /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/memory_monitor_output.txt
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | memory summary dictionary not yet available
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | ..............................
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . Timing measurements:
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . get job = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . initial setup = 21 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . payload setup = 1 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . total setup = 22 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . stage-in = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . payload execution = 2 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | . stage-out = 0 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | ..............................
[2022-08-22 14:17:04] 2022-08-22 12:16:13,270 | INFO | building log extracts (sent to the server as 'pilotLog')
[2022-08-22 14:17:04] 2022-08-22 12:16:13,271 | INFO | executing command: tail -n 20 /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/pilotlog.txt
[2022-08-22 14:17:04] [end log extracts]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,277 | WARNING | pilotErrorCodes = [1305, 1187] (will report primary/first error code)
[2022-08-22 14:17:04] 2022-08-22 12:16:13,277 | WARNING | pilotErrorDiags = ["Failed to execute payload:mktemp: failed to create file via template '/tmp/asetup_XXXXXX.sh': Read-only file system\n/bin/bash: Sim_tf.py: comm
[2022-08-22 14:17:04] 2022-08-22 12:16:13,702 | INFO |
[2022-08-22 14:17:04] 2022-08-22 12:16:13,702 | INFO | job summary report
[2022-08-22 14:17:04] 2022-08-22 12:16:13,702 | INFO | --------------------------------------------------
[2022-08-22 14:17:04] 2022-08-22 12:16:13,703 | INFO | PanDA job id: 5515971838
[2022-08-22 14:17:04] 2022-08-22 12:16:13,703 | INFO | task id: NULL
[2022-08-22 14:17:04] 2022-08-22 12:16:13,703 | INFO | error 1/2: 1305: Failed to execute payload:mktemp: failed to create file via template '/tmp/asetup_XXXXXX.sh': Read-only file system
[2022-08-22 14:17:04] /bin/bash: Sim_tf.py: command not found
[2022-08-22 14:17:04]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,703 | INFO | error 2/2: 1187: Payload metadata does not exist
[2022-08-22 14:17:04] 2022-08-22 12:16:13,703 | INFO | pilot error code: 1187
[2022-08-22 14:17:04] 2022-08-22 12:16:13,704 | INFO | pilot error diag: metadata does not exist: /var/lib/boinc-client/slots/1/PanDA_Pilot-5515971838/metadata.xml
[2022-08-22 14:17:04] 2022-08-22 12:16:13,704 | INFO | status: LOG_TRANSFER = DONE
[2022-08-22 14:17:04] 2022-08-22 12:16:13,704 | INFO | pilot state: failed
[2022-08-22 14:17:04] 2022-08-22 12:16:13,704 | INFO | transexitcode: 127
[2022-08-22 14:17:04] 2022-08-22 12:16:13,704 | INFO | exeerrorcode: 0
[2022-08-22 14:17:04] 2022-08-22 12:16:13,705 | INFO | exeerrordiag:
[2022-08-22 14:17:04] 2022-08-22 12:16:13,705 | INFO | exitcode: 0
[2022-08-22 14:17:04] 2022-08-22 12:16:13,705 | INFO | exitmsg:
[2022-08-22 14:17:04] 2022-08-22 12:16:13,705 | INFO | cpuconsumptiontime: 3 s
[2022-08-22 14:17:04] 2022-08-22 12:16:13,705 | INFO | nevents: 0
[2022-08-22 14:17:04] 2022-08-22 12:16:13,706 | INFO | neventsw: 0
[2022-08-22 14:17:04] 2022-08-22 12:16:13,706 | INFO | pid: 2510329
[2022-08-22 14:17:04] 2022-08-22 12:16:13,706 | INFO | pgrp: 2510328
[2022-08-22 14:17:04] 2022-08-22 12:16:13,706 | INFO | corecount: 4
[2022-08-22 14:17:04] 2022-08-22 12:16:13,706 | INFO | event service: False
[2022-08-22 14:17:04] 2022-08-22 12:16:13,706 | INFO | sizes: {0: 2650565, 11: 2650565, 67: 2659339, 183: 2659283}
[2022-08-22 14:17:04] 2022-08-22 12:16:13,707 | INFO | --------------------------------------------------
[2022-08-22 14:17:04] 2022-08-22 12:16:13,707 | INFO |
[2022-08-22 14:17:04] 2022-08-22 12:16:13,707 | INFO | executing command: ls -lF /var/lib/boinc-client/slots/1
[2022-08-22 14:17:04] 2022-08-22 12:16:13,744 | INFO | queue jobs had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,744 | INFO | queue payloads had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,744 | INFO | queue data_in had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,744 | INFO | queue data_out had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,744 | INFO | queue current_data_in had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,744 | INFO | queue validated_jobs had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue validated_payloads had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue monitored_payloads had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue finished_jobs had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue finished_payloads had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue finished_data_in had 1 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue finished_data_out had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue failed_jobs had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue failed_payloads had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue failed_data_in had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue failed_data_out had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue completed_jobs had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue completed_jobids has 1 job(s)
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | queue realtimelog_payloads had 0 job(s) [purged]
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | job 5515971838 has completed (purged errors)
[2022-08-22 14:17:04] 2022-08-22 12:16:13,745 | INFO | overall cleanup function is called
[2022-08-22 14:17:04] 2022-08-22 12:16:14,751 | INFO | --- collectZombieJob: --- 10, [2510329]
[2022-08-22 14:17:04] 2022-08-22 12:16:14,751 | INFO | zombie collector trying to kill pid 2510329
[2022-08-22 14:17:04] 2022-08-22 12:16:14,752 | INFO | harmless exception when collecting zombies: [Errno 10] No child processes
[2022-08-22 14:17:04] 2022-08-22 12:16:15,757 | INFO | collected zombie processes
[2022-08-22 14:17:04] 2022-08-22 12:16:15,758 | INFO | will now attempt to kill all subprocesses of pid=2510329
[2022-08-22 14:17:04] 2022-08-22 12:16:15,823 | INFO | process IDs to be killed: [2510329] (in reverse order)
[2022-08-22 14:17:04] 2022-08-22 12:16:15,843 | WARNING | found no corresponding commands to process id(s)
[2022-08-22 14:17:04] 2022-08-22 12:16:15,843 | INFO | Do not look for orphan processes in BOINC jobs
[2022-08-22 14:17:04] 2022-08-22 12:16:15,844 | INFO | ready for new job
[2022-08-22 14:17:04] 2022-08-22 12:16:15,844 | INFO | pilot has finished for previous job - re-establishing logging
[2022-08-22 14:17:04] 2022-08-22 12:16:15,844 | INFO | ***************************************
[2022-08-22 14:17:04] 2022-08-22 12:16:15,844 | INFO | *** PanDA Pilot version 3.3.3 (1) ***
[2022-08-22 14:17:04] 2022-08-22 12:16:15,844 | INFO | ***************************************
[2022-08-22 14:17:04] 2022-08-22 12:16:15,844 | INFO |
[2022-08-22 14:17:04] 2022-08-22 12:16:15,863 | INFO | architecture information:
[2022-08-22 14:17:04] 2022-08-22 12:16:15,896 | INFO |
[2022-08-22 14:17:04] LSB Version: :core-4.1-amd64:core-4.1-noarch
[2022-08-22 14:17:04] Distributor ID: CentOS
[2022-08-22 14:17:04] Description: CentOS Linux release 7.9.2009 (Core)
[2022-08-22 14:17:04] Release: 7.9.2009
[2022-08-22 14:17:04] Codename: Core
[2022-08-22 14:17:04] 2022-08-22 12:16:15,896 | INFO | ***************************************
[2022-08-22 14:17:04] 2022-08-22 12:16:16,401 | INFO | executing command: df -mP /var/lib/boinc-client/slots/1
[2022-08-22 14:17:04] 2022-08-22 12:16:16,416 | INFO | sufficient remaining disk space (150546153472 B)
[2022-08-22 14:17:04] 2022-08-22 12:16:16,416 | WARNING | since timefloor is set to 0, pilot was only allowed to run one job
[2022-08-22 14:17:04] 2022-08-22 12:16:16,416 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2022-08-22 14:17:04] 2022-08-22 12:16:16,495 | INFO | [payload] validate_post thread has finished
[2022-08-22 14:17:04] 2022-08-22 12:16:16,891 | INFO | [payload] execute_payloads thread has finished
[2022-08-22 14:17:04] 2022-08-22 12:16:17,039 | INFO | [payload] validate_pre thread has finished
[2022-08-22 14:17:04] 2022-08-22 12:16:17,107 | INFO | [payload] failed_post thread has finished
[2022-08-22 14:17:04] 2022-08-22 12:16:17,115 | INFO | [monitor] control thread has ended
[2022-08-22 14:17:04] 2022-08-22 12:16:17,720 | WARNING | data:copytool_out:received graceful stop - abort after this iteration
[2022-08-22 14:17:04] 2022-08-22 12:16:18,315 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2022-08-22 14:17:04] 2022-08-22 12:16:32,503 | INFO | [payload] run_realtimelog thread has finished
[2022-08-22 14:17:04] 2022-08-22 12:17:04,067 | WARNING | no jobs in monitored_payloads queue (waited for 62 s)
[2022-08-22 14:17:04] 2022-08-22 12:17:04,383 | INFO | end of generic workflow (traces error code: 0)
[2022-08-22 14:17:04] 2022-08-22 12:17:04,383 | INFO | traces error code: 0
[2022-08-22 14:17:04] 2022-08-22 12:17:04,383 | INFO | pilot has finished
[2022-08-22 14:17:04] 2022-08-22 12:17:04,407 [wrapper] ==== pilot stdout END ====
[2022-08-22 14:17:04] 2022-08-22 12:17:04,409 [wrapper] ==== wrapper stdout RESUME ====
[2022-08-22 14:17:04] 2022-08-22 12:17:04,412 [wrapper] pilotpid: 2507082
[2022-08-22 14:17:04] 2022-08-22 12:17:04,414 [wrapper] Pilot exit status: 0
[2022-08-22 14:17:04] 2022-08-22 12:17:04,420 [wrapper] pandaids: 5515971838
[2022-08-22 14:17:04] 2022-08-22 12:17:04,424 [wrapper] apfmon messages muted
[2022-08-22 14:17:04] 2022-08-22 12:17:04,425 [wrapper] Test setup, not cleaning
[2022-08-22 14:17:04] 2022-08-22 12:17:04,427 [wrapper] ==== wrapper stdout END ====
[2022-08-22 14:17:04] 2022-08-22 12:17:04,429 [wrapper] ==== wrapper stderr END ====
[2022-08-22 14:17:04] 2022-08-22 12:17:04,432 [wrapper] wrapperexiting ec=0, duration=272
[2022-08-22 14:17:04] 2022-08-22 12:17:04,434 [wrapper] apfmon messages muted
[2022-08-22 14:17:04] *** Error codes and diagnostics ***
[2022-08-22 14:17:04] "exeErrorCode": 0,
[2022-08-22 14:17:04] "exeErrorDiag": "",
[2022-08-22 14:17:04] "pilotErrorCode": 1305,
[2022-08-22 14:17:04] "pilotErrorDiag": "Failed to execute payload:mktemp: failed to create file via template '/tmp/asetup_XXXXXX.sh': Read-only file system\n/bin/bash: Sim_tf.py: command not found\n",
[2022-08-22 14:17:04] *** Listing of results directory ***
[2022-08-22 14:17:04] total 40840
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 358966 Aug 22 13:28 pilot3.tar.gz
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 4534 Aug 22 14:03 queuedata.json
[2022-08-22 14:17:04] -rwx------ 1 boinc boinc 27162 Aug 22 14:03 runpilot2-wrapper.sh
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 107 Aug 22 14:12 wrapper_26015_x86_64-pc-linux-gnu
[2022-08-22 14:17:04] -rwxr-xr-x 1 boinc boinc 8176 Aug 22 14:12 run_atlas
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 112 Aug 22 14:12 job.xml
[2022-08-22 14:17:04] -rw-r--r-- 2 boinc boinc 37960264 Aug 22 14:12 EVNT.04972714._000040.pool.root.1
[2022-08-22 14:17:04] -rw-r--r-- 2 boinc boinc 16697 Aug 22 14:12 start_atlas.sh
[2022-08-22 14:17:04] drwxrwx--x 2 boinc boinc 4096 Aug 22 14:12 shared
[2022-08-22 14:17:04] -rw-r--r-- 2 boinc boinc 369750 Aug 22 14:12 input.tar.gz
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 6541 Aug 22 14:12 init_data.xml
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 0 Aug 22 14:12 boinc_lockfile
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 2802 Aug 22 14:12 pandaJob.out
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 1015354 Aug 22 14:12 agis_schedconf.cvmfs.json
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 1778034 Aug 22 14:12 agis_ddmendpoints.agis.ALL.json
[2022-08-22 14:17:04] drwx------ 4 boinc boinc 4096 Aug 22 14:12 pilot3
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 6411 Aug 22 14:14 8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log.tgz
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 2277 Aug 22 14:16 heartbeat.json
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 528 Aug 22 14:16 boinc_task_state.xml
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 22 Aug 22 14:17 wrapper_checkpoint.txt
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 8192 Aug 22 14:17 boinc_mmap_file
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 1974 Aug 22 14:17 pilotlog.txt
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 64351 Aug 22 14:17 8a6e718d-c92a-4ece-9644-0006492493097-1661169808_98767.1.job.log
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 251 Aug 22 14:17 output.list
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 9352 Aug 22 14:17 runtime_log.err
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 722 Aug 22 14:17 runtime_log
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 81920 Aug 22 14:17 result.tar.gz
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 549 Aug 22 14:17 8RQMDmbKLk1n7Olcko1bjSoqABFKDmABFKDmKFbSDmIyIKDmnrnkVo.diag
[2022-08-22 14:17:04] -rw-r--r-- 1 boinc boinc 23003 Aug 22 14:17 stderr.txt
[2022-08-22 14:17:04] No HITS result produced
[2022-08-22 14:17:04] *** Contents of shared directory: ***
[2022-08-22 14:17:04] total 37536
[2022-08-22 14:17:04] -rw-r--r-- 2 boinc boinc 37960264 Aug 22 14:12 ATLAS.root_0
[2022-08-22 14:17:04] -rw-r--r-- 2 boinc boinc 16697 Aug 22 14:12 start_atlas.sh
[2022-08-22 14:17:04] -rw-r--r-- 2 boinc boinc 369750 Aug 22 14:12 input.tar.gz
[2022-08-22 14:17:04] -rw------- 1 boinc boinc 81920 Aug 22 14:17 result.tar.gz
14:17:05 (2498264): run_atlas exited; CPU time 8.806008
14:17:05 (2498264): called boinc_finish(0)
</stderr_txt>
]]>
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