Name 4sXKDmQLLk1n7Olcko1bjSoqABFKDmABFKDmKFbSDm3yIKDmf1symn_0
Workunit 2205626
Created 22 Aug 2022, 12:04:25 UTC
Sent 22 Aug 2022, 12:57:27 UTC
Report deadline 29 Aug 2022, 12:57:27 UTC
Received 22 Aug 2022, 13:11:07 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4636
Run time 5 min 44 sec
CPU time 7 sec
Validate state Valid
Credit 3.19
Device peak FLOPS 4.00 GFLOPS
Application version ATLAS Simulation v1.24 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 61.64 MB
Peak swap size 1.42 GB
Peak disk usage 78.47 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
15:05:11 (2628142): wrapper (7.7.26015): starting
15:05:11 (2628142): wrapper: running run_atlas (--nthreads 4)
[2022-08-22 15:05:11] Arguments: --nthreads 4
[2022-08-22 15:05:11] Threads: 4
[2022-08-22 15:05:11] Checking for CVMFS
[2022-08-22 15:05:11] Probing /cvmfs/atlas.cern.ch... OK
[2022-08-22 15:05:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2022-08-22 15:05:11] Running cvmfs_config stat atlas.cern.ch
[2022-08-22 15:05:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2022-08-22 15:05:11] 2.8.2.0 2564521 19 33344 108507 0 25 3123584 4096001 79 130560 0 183154 100.000 2 5 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://137.138.123.72:3128 1
[2022-08-22 15:05:11] CVMFS is ok
[2022-08-22 15:05:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2022-08-22 15:05:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2022-08-22 15:05:11] Further information can be found at the LHC@home message board.
[2022-08-22 15:05:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2022-08-22 15:05:11] Checking for apptainer binary...
[2022-08-22 15:05:11] Using apptainer found in PATH at /usr/bin/apptainer
[2022-08-22 15:05:11] Running /usr/bin/apptainer --version
[2022-08-22 15:05:11] apptainer version 1.1.0-rc.2
[2022-08-22 15:05:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2022-08-22 15:05:11] pcoslo6
[2022-08-22 15:05:11] apptainer works
[2022-08-22 15:05:11] Set ATHENA_PROC_NUMBER=4
[2022-08-22 15:05:11] Starting ATLAS job with PandaID=5515971838
[2022-08-22 15:05:11] Try creating a directory in /tmp
[2022-08-22 15:05:11] /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /tmp/tmp.XXXXX
[2022-08-22 15:05:11] /usr/bin/mktemp: failed to create file via template '/tmp/tmp.XXXXX': Read-only file system
[2022-08-22 15:05:11] mktemp /tmp failed
[2022-08-22 15:05:11] Try creating a directory in /var/tmp
[2022-08-22 15:05:11] /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /var/tmp/tmp.XXXXX
[2022-08-22 15:05:12] /usr/bin/mktemp: failed to create file via template '/var/tmp/tmp.XXXXX': Read-only file system
[2022-08-22 15:05:12] mktemp /var/tmp failed
[2022-08-22 15:05:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2022-08-22 15:10:53]  *** The last 200 lines of the pilot log: ***
[2022-08-22 15:10:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2022-08-22 15:10:53]  is_tar=False
[2022-08-22 15:10:53]  lfn=8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz
[2022-08-22 15:10:53]  mtime=0
[2022-08-22 15:10:53]  protocol_id=None
[2022-08-22 15:10:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2022-08-22 15:10:53]  replicas=None
[2022-08-22 15:10:53]  scope=hc_test
[2022-08-22 15:10:53]  status=None
[2022-08-22 15:10:53]  status_code=0
[2022-08-22 15:10:53]  storage_token=
[2022-08-22 15:10:53]  surl=/home/boinc/slots/0/PanDA_Pilot-5515971838/8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz
[2022-08-22 15:10:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/36/e7/8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz
[2022-08-22 15:10:53]  workdir=None
[2022-08-22 15:10:53] ]
[2022-08-22 15:10:53] 2022-08-22 13:08:07,402 | INFO     | transferring file 8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz from /home/boinc/slots/0/PanDA_Pilot-5515971838/8a6e718d-c92a-4ece-9644-0006
[2022-08-22 15:10:53] 2022-08-22 13:08:07,402 | INFO     | executing command: /usr/bin/env mv /home/boinc/slots/0/PanDA_Pilot-5515971838/8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz /home/boinc/slot
[2022-08-22 15:10:53] 2022-08-22 13:08:07,413 | INFO     | Adding to output.list: 8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/36/e7/8a
[2022-08-22 15:10:53] 2022-08-22 13:08:07,413 | INFO     | executing command: ps aux -q 2642967
[2022-08-22 15:10:53] 2022-08-22 13:08:07,425 | INFO     | summary of transferred files:
[2022-08-22 15:10:53] 2022-08-22 13:08:07,425 | INFO     |  -- lfn=8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz, status_code=0, status=transferred
[2022-08-22 15:10:53] 2022-08-22 13:08:07,425 | INFO     | stage-out finished correctly
[2022-08-22 15:10:53] 2022-08-22 13:08:08,775 | INFO     | finished stage-out (of log) for failed payload
[2022-08-22 15:10:53] 2022-08-22 13:08:08,805 | INFO     | job 5515971838 has state=failed
[2022-08-22 15:10:53] 2022-08-22 13:08:08,805 | INFO     | preparing for final server update for job 5515971838 in state='failed'
[2022-08-22 15:10:53] 2022-08-22 13:08:49,867 | INFO     | monitor loop #0: job 0:5515971838 is in state 'failed'
[2022-08-22 15:10:53] 2022-08-22 13:08:49,867 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2022-08-22 15:10:53] 2022-08-22 13:09:50,347 | INFO     | 142.48897695541382s have passed since pilot start
[2022-08-22 15:10:53] 2022-08-22 13:09:51,467 | INFO     | monitor loop #1: job 0:5515971838 is in state 'failed'
[2022-08-22 15:10:53] 2022-08-22 13:09:51,467 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,229 | INFO     | proceeding with final server update
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | job 5515971838 has failed - writing final server update
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | found no stored workdir sizes
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | will not add max space = 0 B to job metrics
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | wrong length of table data, x=[], y=[] (must be same and length>=4)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | payload/TRF did not report the number of read events
[2022-08-22 15:10:53] 2022-08-22 13:10:04,247 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-22 15:10:53] 2022-08-22 13:10:04,266 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-5515971838/memory_monitor_summary.json (trf name=prmon)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | memory information not available: 'Max'
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | ..............................
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . Timing measurements:
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . get job = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . initial setup = 20 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . payload setup = 1 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . total setup = 21 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . stage-in = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . payload execution = 2 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . stage-out = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | ..............................
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-5515971838/pilotlog.txt
[2022-08-22 15:10:53] 2022-08-22 13:10:04,275 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2022-08-22 15:10:53] - Log from pilotlog.txt -
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | found no stored workdir sizes
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | will not add max space = 0 B to job metrics
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | wrong length of table data, x=[], y=[] (must be same and length>=4)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | payload/TRF did not report the number of read events
[2022-08-22 15:10:53] 2022-08-22 13:10:04,247 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-22 15:10:53] 2022-08-22 13:10:04,266 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-5515971838/memory_monitor_summary.json (trf name=prmon)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | memory information not available: 'Max'
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | ..............................
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . Timing measurements:
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . get job = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . initial setup = 20 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . payload setup = 1 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . total setup = 21 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . stage-in = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . payload execution = 2 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . stage-out = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | ..............................
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-5515971838/pilotlog.txt
[2022-08-22 15:10:53] 2022-08-22 13:10:04,275 | WARNING  | 
[2022-08-22 15:10:53] [begin log extracts]
[2022-08-22 15:10:53] - Log from pilotlog.txt -
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | found no stored workdir sizes
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | will not add max space = 0 B to job metrics
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | WARNING  | wrong length of table data, x=[], y=[] (must be same and length>=4)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,230 | INFO     | payload/TRF did not report the number of read events
[2022-08-22 15:10:53] 2022-08-22 13:10:04,247 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-22 15:10:53] 2022-08-22 13:10:04,266 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-5515971838/memory_monitor_summary.json (trf name=prmon)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | memory information not available: 'Max'
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | ..............................
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . Timing measurements:
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . get job = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . initial setup = 20 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . payload setup = 1 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . total setup = 21 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . stage-in = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . payload execution = 2 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | . stage-out = 0 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | ..............................
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2022-08-22 15:10:53] 2022-08-22 13:10:04,267 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-5515971838/pilotlog.txt
[2022-08-22 15:10:53] [end log extracts]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,275 | WARNING  | pilotErrorCodes = [1305, 1187] (will report primary/first error code)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,275 | WARNING  | pilotErrorDiags = ["Failed to execute payload:mktemp: failed to create file via template '/tmp/asetup_XXXXXX.sh': Read-only file system\n/bin/bash: Sim_tf.py: comm
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | 
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | job summary report
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | --------------------------------------------------
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | PanDA job id: 5515971838
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | task id: NULL
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | error 1/2: 1305: Failed to execute payload:mktemp: failed to create file via template '/tmp/asetup_XXXXXX.sh': Read-only file system
[2022-08-22 15:10:53] /bin/bash: Sim_tf.py: command not found
[2022-08-22 15:10:53] 
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | error 2/2: 1187: Payload metadata does not exist
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | pilot error code: 1187
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | pilot error diag: metadata does not exist: /home/boinc/slots/0/PanDA_Pilot-5515971838/metadata.xml
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | status: LOG_TRANSFER = DONE 
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | pilot state: failed 
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | transexitcode: 127
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | exeerrorcode: 0
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | exeerrordiag: 
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | exitcode: 0
[2022-08-22 15:10:53] 2022-08-22 13:10:04,306 | INFO     | exitmsg: 
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | cpuconsumptiontime: 3 s
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | nevents: 0
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | neventsw: 0
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | pid: 2644708
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | pgrp: 2644708
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | corecount: 4
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | event service: False
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | sizes: {0: 2650555, 11: 2650555, 7: 2655022, 8: 2659299, 9: 2659327, 124: 2659299}
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | --------------------------------------------------
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | 
[2022-08-22 15:10:53] 2022-08-22 13:10:04,307 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue jobs had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue payloads had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue data_in had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue data_out had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue completed_jobids has 1 job(s)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,319 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2022-08-22 15:10:53] 2022-08-22 13:10:04,320 | INFO     | job 5515971838 has completed (purged errors)
[2022-08-22 15:10:53] 2022-08-22 13:10:04,320 | INFO     | overall cleanup function is called
[2022-08-22 15:10:53] 2022-08-22 13:10:05,323 | INFO     | --- collectZombieJob: --- 10, [2644708]
[2022-08-22 15:10:53] 2022-08-22 13:10:05,323 | INFO     | zombie collector trying to kill pid 2644708
[2022-08-22 15:10:53] 2022-08-22 13:10:05,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2022-08-22 15:10:53] 2022-08-22 13:10:06,327 | INFO     | collected zombie processes
[2022-08-22 15:10:53] 2022-08-22 13:10:06,327 | INFO     | will now attempt to kill all subprocesses of pid=2644708
[2022-08-22 15:10:53] 2022-08-22 13:10:06,377 | INFO     | process IDs to be killed: [2644708] (in reverse order)
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | WARNING  | found no corresponding commands to process id(s)
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | INFO     | ready for new job
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | INFO     | pilot has finished for previous job - re-establishing logging
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | INFO     | ***************************************
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | INFO     | ***  PanDA Pilot version 3.3.3 (1)  ***
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | INFO     | ***************************************
[2022-08-22 15:10:53] 2022-08-22 13:10:06,401 | INFO     | 
[2022-08-22 15:10:53] 2022-08-22 13:10:06,419 | INFO     | architecture information:
[2022-08-22 15:10:53] 2022-08-22 13:10:06,458 | INFO     | 
[2022-08-22 15:10:53] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2022-08-22 15:10:53] Distributor ID:	CentOS
[2022-08-22 15:10:53] Description:	CentOS Linux release 7.9.2009 (Core)
[2022-08-22 15:10:53] Release:	7.9.2009
[2022-08-22 15:10:53] Codename:	Core
[2022-08-22 15:10:53] 2022-08-22 13:10:06,458 | INFO     | ***************************************
[2022-08-22 15:10:53] 2022-08-22 13:10:06,959 | INFO     | executing command: df -mP /home/boinc/slots/0
[2022-08-22 15:10:53] 2022-08-22 13:10:06,969 | INFO     | sufficient remaining disk space (150540910592 B)
[2022-08-22 15:10:53] 2022-08-22 13:10:06,969 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2022-08-22 15:10:53] 2022-08-22 13:10:07,262 | INFO     | [payload] validate_pre thread has finished
[2022-08-22 15:10:53] 2022-08-22 13:10:07,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2022-08-22 15:10:53] 2022-08-22 13:10:07,385 | INFO     | [monitor] control thread has ended
[2022-08-22 15:10:53] 2022-08-22 13:10:07,687 | INFO     | [payload] validate_post thread has finished
[2022-08-22 15:10:53] 2022-08-22 13:10:08,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2022-08-22 15:10:53] 2022-08-22 13:10:08,284 | INFO     | [payload] execute_payloads thread has finished
[2022-08-22 15:10:53] 2022-08-22 13:10:08,447 | INFO     | [payload] failed_post thread has finished
[2022-08-22 15:10:53] 2022-08-22 13:10:09,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2022-08-22 15:10:53] 2022-08-22 13:10:22,737 | INFO     | [payload] run_realtimelog thread has finished
[2022-08-22 15:10:53] 2022-08-22 13:10:53,070 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
[2022-08-22 15:10:53] 2022-08-22 13:10:53,665 | INFO     | end of generic workflow (traces error code: 0)
[2022-08-22 15:10:53] 2022-08-22 13:10:53,665 | INFO     | traces error code: 0
[2022-08-22 15:10:53] 2022-08-22 13:10:53,665 | INFO     | pilot has finished
[2022-08-22 15:10:53] 2022-08-22 13:10:53,692 [wrapper] ==== pilot stdout END ====
[2022-08-22 15:10:53] 2022-08-22 13:10:53,695 [wrapper] ==== wrapper stdout RESUME ====
[2022-08-22 15:10:53] 2022-08-22 13:10:53,697 [wrapper] pilotpid: 2642967
[2022-08-22 15:10:53] 2022-08-22 13:10:53,699 [wrapper] Pilot exit status: 0
[2022-08-22 15:10:53] 2022-08-22 13:10:53,706 [wrapper] pandaids: 5515971838
[2022-08-22 15:10:53] 2022-08-22 13:10:53,710 [wrapper] apfmon messages muted
[2022-08-22 15:10:53] 2022-08-22 13:10:53,712 [wrapper] Test setup, not cleaning
[2022-08-22 15:10:53] 2022-08-22 13:10:53,714 [wrapper] ==== wrapper stdout END ====
[2022-08-22 15:10:53] 2022-08-22 13:10:53,715 [wrapper] ==== wrapper stderr END ====
[2022-08-22 15:10:53] 2022-08-22 13:10:53,719 [wrapper] wrapperexiting ec=0, duration=341
[2022-08-22 15:10:53] 2022-08-22 13:10:53,721 [wrapper] apfmon messages muted
[2022-08-22 15:10:53]  *** Error codes and diagnostics ***
[2022-08-22 15:10:53]     "exeErrorCode": 0,
[2022-08-22 15:10:53]     "exeErrorDiag": "",
[2022-08-22 15:10:53]     "pilotErrorCode": 1305,
[2022-08-22 15:10:53]     "pilotErrorDiag": "Failed to execute payload:mktemp: failed to create file via template '/tmp/asetup_XXXXXX.sh': Read-only file system\n/bin/bash: Sim_tf.py: command not found\n",
[2022-08-22 15:10:53]  *** Listing of results directory ***
[2022-08-22 15:10:53] total 40840
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc   358966 Aug 22 13:28 pilot3.tar.gz
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc     4534 Aug 22 14:03 queuedata.json
[2022-08-22 15:10:53] -rwx------ 1 boinc boinc    27162 Aug 22 14:04 runpilot2-wrapper.sh
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc      107 Aug 22 15:05 wrapper_26015_x86_64-pc-linux-gnu
[2022-08-22 15:10:53] -rwxr-xr-x 1 boinc boinc     8176 Aug 22 15:05 run_atlas
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc      112 Aug 22 15:05 job.xml
[2022-08-22 15:10:53] -rw-r--r-- 2 boinc boinc    16697 Aug 22 15:05 start_atlas.sh
[2022-08-22 15:10:53] drwxrwx--x 2 boinc boinc     4096 Aug 22 15:05 shared
[2022-08-22 15:10:53] -rw-r--r-- 2 boinc boinc   369747 Aug 22 15:05 input.tar.gz
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc     6524 Aug 22 15:05 init_data.xml
[2022-08-22 15:10:53] -rw-r--r-- 2 boinc boinc 37960264 Aug 22 15:05 EVNT.04972714._000040.pool.root.1
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc        0 Aug 22 15:05 boinc_lockfile
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc     2802 Aug 22 15:05 pandaJob.out
[2022-08-22 15:10:53] -rw------- 1 boinc boinc  1015354 Aug 22 15:07 agis_schedconf.cvmfs.json
[2022-08-22 15:10:53] -rw------- 1 boinc boinc  1778034 Aug 22 15:07 agis_ddmendpoints.agis.ALL.json
[2022-08-22 15:10:53] drwx------ 4 boinc boinc     4096 Aug 22 15:07 pilot3
[2022-08-22 15:10:53] -rw------- 1 boinc boinc      279 Aug 22 15:08 memory_monitor_summary.json
[2022-08-22 15:10:53] -rw------- 1 boinc boinc     6445 Aug 22 15:08 8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log.tgz
[2022-08-22 15:10:53] -rw------- 1 boinc boinc     2279 Aug 22 15:10 heartbeat.json
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc      528 Aug 22 15:10 boinc_task_state.xml
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc       22 Aug 22 15:10 wrapper_checkpoint.txt
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc     8192 Aug 22 15:10 boinc_mmap_file
[2022-08-22 15:10:53] -rw------- 1 boinc boinc     1964 Aug 22 15:10 pilotlog.txt
[2022-08-22 15:10:53] -rw------- 1 boinc boinc    60368 Aug 22 15:10 8a6e718d-c92a-4ece-9644-0006492494262-1661169859_98767.1.job.log
[2022-08-22 15:10:53] -rw------- 1 boinc boinc      251 Aug 22 15:10 output.list
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc     9192 Aug 22 15:10 runtime_log.err
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc      722 Aug 22 15:10 runtime_log
[2022-08-22 15:10:53] -rw------- 1 boinc boinc    81920 Aug 22 15:10 result.tar.gz
[2022-08-22 15:10:53] -rw------- 1 boinc boinc      550 Aug 22 15:10 4sXKDmQLLk1n7Olcko1bjSoqABFKDmABFKDmKFbSDm3yIKDmf1symn.diag
[2022-08-22 15:10:53] -rw-r--r-- 1 boinc boinc    22625 Aug 22 15:10 stderr.txt
[2022-08-22 15:10:53] No HITS result produced
[2022-08-22 15:10:53]  *** Contents of shared directory: ***
[2022-08-22 15:10:53] total 37536
[2022-08-22 15:10:53] -rw-r--r-- 2 boinc boinc    16697 Aug 22 15:05 start_atlas.sh
[2022-08-22 15:10:53] -rw-r--r-- 2 boinc boinc   369747 Aug 22 15:05 input.tar.gz
[2022-08-22 15:10:53] -rw-r--r-- 2 boinc boinc 37960264 Aug 22 15:05 ATLAS.root_0
[2022-08-22 15:10:53] -rw------- 1 boinc boinc    81920 Aug 22 15:10 result.tar.gz
15:10:54 (2628142): run_atlas exited; CPU time 7.825799
15:10:54 (2628142): called boinc_finish(0)

</stderr_txt>
]]>


©2024 CERN