Name 1EhNDmQWYl1n7Olcko1bjSoqABFKDmABFKDmKFbSDmp3IKDmPf4rOn_0
Workunit 2206090
Created 25 Aug 2022, 20:20:45 UTC
Sent 25 Aug 2022, 20:21:18 UTC
Report deadline 1 Sep 2022, 20:21:18 UTC
Received 25 Aug 2022, 20:33:05 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4702
Run time 11 min 13 sec
CPU time 7 min 49 sec
Validate state Valid
Credit 11.03
Device peak FLOPS 4.00 GFLOPS
Application version ATLAS Simulation v1.24 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.50 GB
Peak swap size 2.12 GB
Peak disk usage 77.00 MB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:21:34 (1008617): wrapper (7.7.26015): starting
22:21:34 (1008617): wrapper: running run_atlas (--nthreads 4)
[2022-08-25 22:21:34] Arguments: --nthreads 4
[2022-08-25 22:21:34] Threads: 4
[2022-08-25 22:21:34] Checking for CVMFS
[2022-08-25 22:21:34] Probing /cvmfs/atlas.cern.ch... OK
[2022-08-25 22:21:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2022-08-25 22:21:35] Running cvmfs_config stat atlas.cern.ch
[2022-08-25 22:21:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2022-08-25 22:21:35] 2.9.4.0 948591 135 49120 108654 1 59 2519987 4096001 2346 130560 0 472753 99.995 4131 77 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.86:3128 1
[2022-08-25 22:21:35] CVMFS is ok
[2022-08-25 22:21:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2022-08-25 22:21:35] Checking for apptainer binary...
[2022-08-25 22:21:35] Using apptainer found in PATH at /usr/bin/apptainer
[2022-08-25 22:21:35] Running /usr/bin/apptainer --version
[2022-08-25 22:21:35] apptainer version 1.1.0-rc.2
[2022-08-25 22:21:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2022-08-25 22:21:35] mannivl
[2022-08-25 22:21:35] apptainer works
[2022-08-25 22:21:35] Set ATHENA_PROC_NUMBER=4
[2022-08-25 22:21:35] Starting ATLAS job with PandaID=5575086147
[2022-08-25 22:21:35] Try creating a directory in /tmp
[2022-08-25 22:21:35] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /tmp/tmp.XXXXX
[2022-08-25 22:21:35] /tmp/tmp.6HG9j
[2022-08-25 22:21:35] Try creating a directory in /var/tmp
[2022-08-25 22:21:35] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /var/tmp/tmp.XXXXX
[2022-08-25 22:21:35] /var/tmp/tmp.75qkV
[2022-08-25 22:21:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2022-08-25 22:32:43]  *** The last 200 lines of the pilot log: ***
[2022-08-25 22:32:43]  activity=['pw', 'w', 'default']
[2022-08-25 22:32:43]  allow_lan=True
[2022-08-25 22:32:43]  allow_wan=False
[2022-08-25 22:32:43]  checksum={'adler32': 'b95d1f06'}
[2022-08-25 22:32:43]  dataset=hc_test.gangarbt.hc20248786.tid1189.BOINC-TEST.107
[2022-08-25 22:32:43]  ddm_activity=['write_lan', 'write_wan']
[2022-08-25 22:32:43]  ddmendpoint=NDGF-T1_DATADISK
[2022-08-25 22:32:43]  direct_access_lan=False
[2022-08-25 22:32:43]  direct_access_wan=False
[2022-08-25 22:32:43]  domain=
[2022-08-25 22:32:43]  filesize=1585221
[2022-08-25 22:32:43]  filetype=output
[2022-08-25 22:32:43]  guid=3E46AD26-3C4B-4248-BF5D-32421D499A78
[2022-08-25 22:32:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2022-08-25 22:32:43]  is_tar=False
[2022-08-25 22:32:43]  lfn=output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root
[2022-08-25 22:32:43]  mtime=0
[2022-08-25 22:32:43]  protocol_id=None
[2022-08-25 22:32:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2022-08-25 22:32:43]  replicas=None
[2022-08-25 22:32:43]  scope=hc_test
[2022-08-25 22:32:43]  status=None
[2022-08-25 22:32:43]  status_code=0
[2022-08-25 22:32:43]  storage_token=
[2022-08-25 22:32:43]  surl=/var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147/output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root
[2022-08-25 22:32:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/31/72/output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root
[2022-08-25 22:32:43]  workdir=None
[2022-08-25 22:32:43] ]
[2022-08-25 22:32:43] 2022-08-25 20:32:16,488 | INFO     | transferring file output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root from /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147/output.1.2ab3f0ad-c
[2022-08-25 22:32:43] 2022-08-25 20:32:16,488 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147/output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root /var/li
[2022-08-25 22:32:43] 2022-08-25 20:32:16,523 | INFO     | Adding to output.list: output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/31/72/output.1.2
[2022-08-25 22:32:43] 2022-08-25 20:32:16,523 | INFO     | executing command: ps aux -q 1014233
[2022-08-25 22:32:43] 2022-08-25 20:32:16,557 | INFO     | summary of transferred files:
[2022-08-25 22:32:43] 2022-08-25 20:32:16,557 | INFO     |  -- lfn=output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root, status_code=0, status=transferred
[2022-08-25 22:32:43] 2022-08-25 20:32:16,557 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147
[2022-08-25 22:32:43] 2022-08-25 20:32:16,594 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147
[2022-08-25 22:32:43] 2022-08-25 20:32:16,622 | INFO     | will create archive /var/lib/boinc_data/boinc-01/slots/3/2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz
[2022-08-25 22:32:43] 2022-08-25 20:32:16,622 | INFO     | executing command: pwd;tar cvfz /var/lib/boinc_data/boinc-01/slots/3/2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz tarball_PandaJob_5575086147_BOINC-TEST
[2022-08-25 22:32:43] 2022-08-25 20:32:16,673 | INFO     | copied /var/lib/boinc_data/boinc-01/slots/3/2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz to /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147
[2022-08-25 22:32:43] 2022-08-25 20:32:16,673 | INFO     | prepare to stage-out 1 log file(s)
[2022-08-25 22:32:43] 2022-08-25 20:32:16,673 | INFO     | stage-out will not be done in a container
[2022-08-25 22:32:43] 2022-08-25 20:32:16,674 | INFO     | configured copytools per activity: acopytools={'pr': ['mv'], 'pw': ['mv'], 'read_lan': ['mv'], 'write_lan': ['mv'], 'default': ['rucio']}
[2022-08-25 22:32:43] 2022-08-25 20:32:16,674 | INFO     | [prepare_destinations][pl]: allowed (local) destinations: ['NDGF-T1_DATADISK']
[2022-08-25 22:32:43] 2022-08-25 20:32:16,674 | INFO     | [prepare_destinations][pl]: resolved default destination ddm=NDGF-T1_DATADISK
[2022-08-25 22:32:43] 2022-08-25 20:32:16,675 | INFO     | trying to use copytool=mv for activity=['pl', 'pw', 'w', 'default']
[2022-08-25 22:32:43] 2022-08-25 20:32:16,799 | INFO     | Resolved protocol to be used for transfer: '{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}': l
[2022-08-25 22:32:43] 2022-08-25 20:32:16,799 | INFO     | ready to transfer (stage-out) files: [ accessmode=
[2022-08-25 22:32:43]  activity=['pl', 'pw', 'w', 'default']
[2022-08-25 22:32:43]  allow_lan=True
[2022-08-25 22:32:43]  allow_wan=False
[2022-08-25 22:32:43]  checksum={'adler32': '4b6ad804'}
[2022-08-25 22:32:43]  dataset=hc_test.gangarbt.hc20248786.tid1189.BOINC-TEST.107
[2022-08-25 22:32:43]  ddm_activity=['write_lan', 'write_wan']
[2022-08-25 22:32:43]  ddmendpoint=NDGF-T1_DATADISK
[2022-08-25 22:32:43]  direct_access_lan=False
[2022-08-25 22:32:43]  direct_access_wan=False
[2022-08-25 22:32:43]  domain=
[2022-08-25 22:32:43]  filesize=152885
[2022-08-25 22:32:43]  filetype=log
[2022-08-25 22:32:43]  guid=9d6bbfd7-3b7f-4714-a251-60da0e613027
[2022-08-25 22:32:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2022-08-25 22:32:43]  is_tar=False
[2022-08-25 22:32:43]  lfn=2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz
[2022-08-25 22:32:43]  mtime=0
[2022-08-25 22:32:43]  protocol_id=None
[2022-08-25 22:32:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2022-08-25 22:32:43]  replicas=None
[2022-08-25 22:32:43]  scope=hc_test
[2022-08-25 22:32:43]  status=None
[2022-08-25 22:32:43]  status_code=0
[2022-08-25 22:32:43]  storage_token=
[2022-08-25 22:32:43]  surl=/var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147/2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz
[2022-08-25 22:32:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/11/87/2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz
[2022-08-25 22:32:43]  workdir=None
[2022-08-25 22:32:43] ]
[2022-08-25 22:32:43] 2022-08-25 20:32:16,852 | INFO     | transferring file 2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz from /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147/2ab3f0ad-c458-4f14-bb1d-
[2022-08-25 22:32:43] 2022-08-25 20:32:16,852 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147/2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz /var/lib/boi
[2022-08-25 22:32:43] 2022-08-25 20:32:16,891 | INFO     | Adding to output.list: 2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/11/87/2ab3f0ad-c458-4
[2022-08-25 22:32:43] 2022-08-25 20:32:16,892 | INFO     | executing command: ps aux -q 1014233
[2022-08-25 22:32:43] 2022-08-25 20:32:16,924 | INFO     | summary of transferred files:
[2022-08-25 22:32:43] 2022-08-25 20:32:16,924 | INFO     |  -- lfn=2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz, status_code=0, status=transferred
[2022-08-25 22:32:43] 2022-08-25 20:32:16,925 | INFO     | stage-out finished correctly
[2022-08-25 22:32:43] 2022-08-25 20:32:18,146 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2022-08-25 22:32:43] 2022-08-25 20:32:19,356 | INFO     | job 5575086147 has state=finished
[2022-08-25 22:32:43] 2022-08-25 20:32:19,356 | INFO     | preparing for final server update for job 5575086147 in state='finished'
[2022-08-25 22:32:43] 2022-08-25 20:32:19,357 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2022-08-25 22:32:43] 2022-08-25 20:32:19,357 | INFO     | job 5575086147 has finished - writing final server update
[2022-08-25 22:32:43] 2022-08-25 20:32:19,357 | INFO     | will not add max space = -36100377 B to job metrics
[2022-08-25 22:32:43] 2022-08-25 20:32:19,357 | WARNING  | wrong length of table data, x=[1661459261.0, 1661459322.0, 1661459383.0], y=[1601238.0, 1607979.0, 1613710.0] (must be same and length>=4)
[2022-08-25 22:32:43] 2022-08-25 20:32:19,358 | INFO     | total number of processed events: 2 (read)
[2022-08-25 22:32:43] 2022-08-25 20:32:19,359 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2022-08-25 22:32:43] 2022-08-25 20:32:19,401 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/3/PanDA_Pilot-5575086147/memory_monitor_summary.json (trf name=prmon)
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | extracted standard info from prmon json
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | extracted standard memory fields from prmon json
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | ..............................
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . Timing measurements:
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . get job = 0 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . initial setup = 2 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . payload setup = 11 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . total setup = 13 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . stage-in = 0 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . payload execution = 585 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,402 | INFO     | . stage-out = 0 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,403 | INFO     | ..............................
[2022-08-25 22:32:43] 2022-08-25 20:32:19,948 | INFO     | 
[2022-08-25 22:32:43] 2022-08-25 20:32:19,948 | INFO     | job summary report
[2022-08-25 22:32:43] 2022-08-25 20:32:19,948 | INFO     | --------------------------------------------------
[2022-08-25 22:32:43] 2022-08-25 20:32:19,948 | INFO     | PanDA job id: 5575086147
[2022-08-25 22:32:43] 2022-08-25 20:32:19,948 | INFO     | task id: NULL
[2022-08-25 22:32:43] 2022-08-25 20:32:19,948 | INFO     | errors: (none)
[2022-08-25 22:32:43] 2022-08-25 20:32:19,948 | INFO     | status: LOG_TRANSFER = DONE 
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | pilot state: finished 
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | transexitcode: 0
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | exeerrorcode: 0
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | exeerrordiag: 
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | exitcode: 0
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | exitmsg: OK
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | cpuconsumptiontime: 492 s
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | nevents: 2
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | neventsw: 0
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | pid: 1017323
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | pgrp: 1017323
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | corecount: 4
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | event service: False
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | sizes: {0: 2651021, 11: 2651021, 600: 2671817, 601: 2680922, 603: 2680922, 604: 2681824}
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | --------------------------------------------------
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | 
[2022-08-25 22:32:43] 2022-08-25 20:32:19,949 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/3
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue jobs had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue payloads had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue data_in had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue data_out had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue completed_jobids has 1 job(s)
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | job 5575086147 has completed (purged errors)
[2022-08-25 22:32:43] 2022-08-25 20:32:19,981 | INFO     | overall cleanup function is called
[2022-08-25 22:32:43] 2022-08-25 20:32:20,992 | INFO     | --- collectZombieJob: --- 10, [1017323]
[2022-08-25 22:32:43] 2022-08-25 20:32:20,992 | INFO     | zombie collector trying to kill pid 1017323
[2022-08-25 22:32:43] 2022-08-25 20:32:20,992 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2022-08-25 22:32:43] 2022-08-25 20:32:21,997 | INFO     | collected zombie processes
[2022-08-25 22:32:43] 2022-08-25 20:32:21,998 | INFO     | will now attempt to kill all subprocesses of pid=1017323
[2022-08-25 22:32:43] 2022-08-25 20:32:22,056 | INFO     | process IDs to be killed: [1017323] (in reverse order)
[2022-08-25 22:32:43] 2022-08-25 20:32:22,117 | WARNING  | found no corresponding commands to process id(s)
[2022-08-25 22:32:43] 2022-08-25 20:32:22,117 | INFO     | Do not look for orphan processes in BOINC jobs
[2022-08-25 22:32:43] 2022-08-25 20:32:22,117 | INFO     | ready for new job
[2022-08-25 22:32:43] 2022-08-25 20:32:22,118 | INFO     | pilot has finished for previous job - re-establishing logging
[2022-08-25 22:32:43] 2022-08-25 20:32:22,119 | INFO     | ***************************************
[2022-08-25 22:32:43] 2022-08-25 20:32:22,119 | INFO     | ***  PanDA Pilot version 3.3.3 (1)  ***
[2022-08-25 22:32:43] 2022-08-25 20:32:22,119 | INFO     | ***************************************
[2022-08-25 22:32:43] 2022-08-25 20:32:22,119 | INFO     | 
[2022-08-25 22:32:43] 2022-08-25 20:32:22,119 | INFO     | pilot is running in a VM
[2022-08-25 22:32:43] 2022-08-25 20:32:22,120 | INFO     | architecture information:
[2022-08-25 22:32:43] 2022-08-25 20:32:22,270 | INFO     | 
[2022-08-25 22:32:43] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2022-08-25 22:32:43] Distributor ID:	CentOS
[2022-08-25 22:32:43] Description:	CentOS Linux release 7.9.2009 (Core)
[2022-08-25 22:32:43] Release:	7.9.2009
[2022-08-25 22:32:43] Codename:	Core
[2022-08-25 22:32:43] 2022-08-25 20:32:22,270 | INFO     | ***************************************
[2022-08-25 22:32:43] 2022-08-25 20:32:22,774 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/3
[2022-08-25 22:32:43] 2022-08-25 20:32:22,795 | INFO     | sufficient remaining disk space (44364201984 B)
[2022-08-25 22:32:43] 2022-08-25 20:32:22,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2022-08-25 22:32:43] 2022-08-25 20:32:22,796 | WARNING  | aborting monitor loop since graceful_stop has been set
[2022-08-25 22:32:43] 2022-08-25 20:32:22,796 | INFO     | [monitor] control thread has ended
[2022-08-25 22:32:43] 2022-08-25 20:32:22,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2022-08-25 22:32:43] 2022-08-25 20:32:22,836 | INFO     | [payload] failed_post thread has finished
[2022-08-25 22:32:43] 2022-08-25 20:32:23,618 | INFO     | [payload] execute_payloads thread has finished
[2022-08-25 22:32:43] 2022-08-25 20:32:23,974 | INFO     | [payload] validate_pre thread has finished
[2022-08-25 22:32:43] 2022-08-25 20:32:24,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2022-08-25 22:32:43] 2022-08-25 20:32:24,402 | INFO     | [payload] validate_post thread has finished
[2022-08-25 22:32:43] 2022-08-25 20:32:24,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2022-08-25 22:32:43] 2022-08-25 20:32:33,448 | INFO     | [payload] run_realtimelog thread has finished
[2022-08-25 22:32:43] 2022-08-25 20:32:42,628 | WARNING  | no jobs in monitored_payloads queue (waited for 72 s)
[2022-08-25 22:32:43] 2022-08-25 20:32:43,434 | INFO     | end of generic workflow (traces error code: 0)
[2022-08-25 22:32:43] 2022-08-25 20:32:43,435 | INFO     | traces error code: 0
[2022-08-25 22:32:43] 2022-08-25 20:32:43,435 | INFO     | pilot has finished
[2022-08-25 22:32:43] 2022-08-25 20:32:43,496 [wrapper] ==== pilot stdout END ====
[2022-08-25 22:32:43] 2022-08-25 20:32:43,505 [wrapper] ==== wrapper stdout RESUME ====
[2022-08-25 22:32:43] 2022-08-25 20:32:43,516 [wrapper] pilotpid: 1014233
[2022-08-25 22:32:43] 2022-08-25 20:32:43,525 [wrapper] Pilot exit status: 0
[2022-08-25 22:32:43] 2022-08-25 20:32:43,555 [wrapper] pandaids: 5575086147
[2022-08-25 22:32:43] 2022-08-25 20:32:43,573 [wrapper] apfmon messages muted
[2022-08-25 22:32:43] 2022-08-25 20:32:43,594 [wrapper] Test setup, not cleaning
[2022-08-25 22:32:43] 2022-08-25 20:32:43,603 [wrapper] ==== wrapper stdout END ====
[2022-08-25 22:32:43] 2022-08-25 20:32:43,612 [wrapper] ==== wrapper stderr END ====
[2022-08-25 22:32:43] 2022-08-25 20:32:43,629 [wrapper] wrapperexiting ec=0, duration=668
[2022-08-25 22:32:43] 2022-08-25 20:32:43,638 [wrapper] apfmon messages muted
[2022-08-25 22:32:43]  *** Error codes and diagnostics ***
[2022-08-25 22:32:43]     "exeErrorCode": 0,
[2022-08-25 22:32:43]     "exeErrorDiag": "",
[2022-08-25 22:32:43]     "pilotErrorCode": 0,
[2022-08-25 22:32:43]     "pilotErrorDiag": "",
[2022-08-25 22:32:43]  *** Listing of results directory ***
[2022-08-25 22:32:43] insgesamt 43304
[2022-08-25 22:32:43] -rw-r--r-- 1 yeti yeti   358966 Aug 25 21:28 pilot3.tar.gz
[2022-08-25 22:32:43] -rwx------ 1 yeti yeti    26743 Aug 25 22:20 runpilot2-wrapper.sh
[2022-08-25 22:32:43] -rw-r--r-- 1 yeti yeti     4534 Aug 25 22:20 queuedata.json
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti      107 Aug 25 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2022-08-25 22:32:43] -rwxr-xr-x 1 yeti yeti     8176 Aug 25 22:21 run_atlas
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti      112 Aug 25 22:21 job.xml
[2022-08-25 22:32:43] -rw-r--r-- 2 yeti yeti    16652 Aug 25 22:21 start_atlas.sh
[2022-08-25 22:32:43] drwxrwx--x 2 yeti yeti     4096 Aug 25 22:21 shared
[2022-08-25 22:32:43] -rw-r--r-- 2 yeti yeti   369658 Aug 25 22:21 input.tar.gz
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti     6249 Aug 25 22:21 init_data.xml
[2022-08-25 22:32:43] -rw-r--r-- 2 yeti yeti 36949600 Aug 25 22:21 EVNT.04972714._000039.pool.root.1
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti        0 Aug 25 22:21 boinc_lockfile
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti     2739 Aug 25 22:21 pandaJob.out
[2022-08-25 22:32:43] -rw------- 1 yeti yeti      469 Aug 25 22:21 setup.sh.local
[2022-08-25 22:32:43] -rw------- 1 yeti yeti  1017079 Aug 25 22:22 agis_schedconf.cvmfs.json
[2022-08-25 22:32:43] -rw------- 1 yeti yeti  1778121 Aug 25 22:22 agis_ddmendpoints.agis.ALL.json
[2022-08-25 22:32:43] drwx------ 4 yeti yeti     4096 Aug 25 22:22 pilot3
[2022-08-25 22:32:43] -rw------- 1 yeti yeti  1585221 Aug 25 22:32 output.1.2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.pool.root
[2022-08-25 22:32:43] -rw------- 1 yeti yeti      996 Aug 25 22:32 memory_monitor_summary.json
[2022-08-25 22:32:43] -rw------- 1 yeti yeti   152885 Aug 25 22:32 2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log.tgz
[2022-08-25 22:32:43] -rw------- 1 yeti yeti     7207 Aug 25 22:32 heartbeat.json
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti     8192 Aug 25 22:32 boinc_mmap_file
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti       24 Aug 25 22:32 wrapper_checkpoint.txt
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti      532 Aug 25 22:32 boinc_task_state.xml
[2022-08-25 22:32:43] -rw------- 1 yeti yeti     2134 Aug 25 22:32 pilotlog.txt
[2022-08-25 22:32:43] -rw------- 1 yeti yeti    82542 Aug 25 22:32 2ab3f0ad-c458-4f14-bb1d-dd36fb8ecccc_3413.1.job.log
[2022-08-25 22:32:43] -rw------- 1 yeti yeti      460 Aug 25 22:32 output.list
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti    10990 Aug 25 22:32 runtime_log.err
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti      744 Aug 25 22:32 runtime_log
[2022-08-25 22:32:43] -rw------- 1 yeti yeti  1843200 Aug 25 22:32 result.tar.gz
[2022-08-25 22:32:43] -rw------- 1 yeti yeti      548 Aug 25 22:32 1EhNDmQWYl1n7Olcko1bjSoqABFKDmABFKDmKFbSDmp3IKDmPf4rOn.diag
[2022-08-25 22:32:43] -rw-rw-r-- 1 yeti yeti    21238 Aug 25 22:32 stderr.txt
[2022-08-25 22:32:43] HITS file was successfully produced:
[2022-08-25 22:32:43] -rw------- 1 yeti yeti 1585221 Aug 25 22:32 shared/HITS.pool.root.1
[2022-08-25 22:32:43]  *** Contents of shared directory: ***
[2022-08-25 22:32:43] insgesamt 39820
[2022-08-25 22:32:43] -rw-r--r-- 2 yeti yeti    16652 Aug 25 22:21 start_atlas.sh
[2022-08-25 22:32:43] -rw-r--r-- 2 yeti yeti   369658 Aug 25 22:21 input.tar.gz
[2022-08-25 22:32:43] -rw-r--r-- 2 yeti yeti 36949600 Aug 25 22:21 ATLAS.root_0
[2022-08-25 22:32:43] -rw------- 1 yeti yeti  1585221 Aug 25 22:32 HITS.pool.root.1
[2022-08-25 22:32:43] -rw------- 1 yeti yeti  1843200 Aug 25 22:32 result.tar.gz
22:32:45 (1008617): run_atlas exited; CPU time 469.470828
22:32:45 (1008617): called boinc_finish(0)

</stderr_txt>
]]>


©2024 CERN