Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
11:34:59 (1825): wrapper (7.7.26015): starting
11:34:59 (1825): wrapper: running run_atlas (--nthreads 3)
[2023-02-22 11:34:59] Arguments: --nthreads 3
[2023-02-22 11:34:59] Threads: 3
[2023-02-22 11:34:59] Checking for CVMFS
[2023-02-22 11:35:08] Probing /cvmfs/atlas.cern.ch... OK
[2023-02-22 11:35:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-02-22 11:35:10] Running cvmfs_config stat atlas.cern.ch
[2023-02-22 11:35:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-02-22 11:35:10] 2.10.0.0 2358 0 24928 115976 3 1 3539416 4096000 0 130560 0 0 0.000 851 474 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2023-02-22 11:35:10] CVMFS is ok
[2023-02-22 11:35:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2023-02-22 11:35:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2023-02-22 11:35:10] Small home clusters do not require a local http proxy but it is suggested if
[2023-02-22 11:35:10] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2023-02-22 11:35:10] Further information can be found at the LHC@home message board.
[2023-02-22 11:35:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-02-22 11:35:10] Checking for apptainer binary...
[2023-02-22 11:35:10] apptainer is not installed, using version from CVMFS
[2023-02-22 11:35:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-02-22 11:35:35] UMVB2004
[2023-02-22 11:35:35] apptainer works
[2023-02-22 11:35:35] Set ATHENA_PROC_NUMBER=3
[2023-02-22 11:35:35] Starting ATLAS job with PandaID=5761743202
[2023-02-22 11:35:35] Try creating a directory in /tmp
[2023-02-22 11:35:35] /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /tmp/tmp.XXXXX
[2023-02-22 11:35:36] /tmp/tmp.aDnec
[2023-02-22 11:35:36] Try creating a directory in /var/tmp
[2023-02-22 11:35:36] /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /var/tmp/tmp.XXXXX
[2023-02-22 11:35:36] /var/tmp/tmp.LRO1H
[2023-02-22 11:35:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-02-22 11:47:54]  *** The last 200 lines of the pilot log: ***
[2023-02-22 11:47:55]  status_code=0
[2023-02-22 11:47:55]  storage_token=
[2023-02-22 11:47:55]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log.tgz
[2023-02-22 11:47:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/56/5d/d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log.tgz
[2023-02-22 11:47:55]  workdir=None
[2023-02-22 11:47:55] ]
[2023-02-22 11:47:55] 2023-02-22 10:45:26,479 | INFO     | transferring file d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log.tgz from /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/d160fd5e-1895-4476-ac3a-266436
[2023-02-22 11:47:55] 2023-02-22 10:45:26,479 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log.tgz /var/lib/boinc-cli
[2023-02-22 11:47:55] 2023-02-22 10:45:26,509 | INFO     | Adding to output.list: d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log.tgz davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/hc_test/56/5d/d160fd5e-1895-
[2023-02-22 11:47:55] 2023-02-22 10:45:26,509 | INFO     | executing command: ps aux -q 8812
[2023-02-22 11:47:55] 2023-02-22 10:45:26,536 | INFO     | summary of transferred files:
[2023-02-22 11:47:55] 2023-02-22 10:45:26,536 | INFO     |  -- lfn=d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log.tgz, status_code=0, status=transferred
[2023-02-22 11:47:55] 2023-02-22 10:45:26,536 | INFO     | stage-out finished correctly
[2023-02-22 11:47:55] 2023-02-22 10:45:26,589 | INFO     | finished stage-out (of log) for failed payload
[2023-02-22 11:47:55] 2023-02-22 10:45:26,685 | INFO     | job 5761743202 has state=failed
[2023-02-22 11:47:55] 2023-02-22 10:45:26,685 | INFO     | preparing for final server update for job 5761743202 in state='failed'
[2023-02-22 11:47:55] 2023-02-22 10:45:51,140 | INFO     | monitor loop #7: job 0:5761743202 is in state 'failed'
[2023-02-22 11:47:55] 2023-02-22 10:45:51,140 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2023-02-22 11:47:55] 2023-02-22 10:46:32,242 | INFO     | 611.5967147350311s have passed since pilot start
[2023-02-22 11:47:55] 2023-02-22 10:46:52,968 | INFO     | monitor loop #8: job 0:5761743202 is in state 'failed'
[2023-02-22 11:47:55] 2023-02-22 10:46:52,968 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,161 | INFO     | proceeding with final server update
[2023-02-22 11:47:55] 2023-02-22 10:47:22,163 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | INFO     | job 5761743202 has failed - writing final server update
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | format EVNTtoHITS has no such key: dbData
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | wrong length of table data, x=[1677062542.0], y=[950365.0] (must be same and length>=4)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,165 | INFO     | payload/TRF did not report the number of read events
[2023-02-22 11:47:55] 2023-02-22 10:47:22,165 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-02-22 11:47:55] 2023-02-22 10:47:22,241 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/memory_monitor_summary.json (trf name=prmon)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,242 | INFO     | extracted standard info from prmon json
[2023-02-22 11:47:55] 2023-02-22 10:47:22,242 | INFO     | extracted standard memory fields from prmon json
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | ..............................
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . Timing measurements:
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . get job = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . initial setup = 2 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . payload setup = 30 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . stage-in = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . payload execution = 497 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . stage-out = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | ..............................
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/pilotlog.txt
[2023-02-22 11:47:55] 2023-02-22 10:47:22,264 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2023-02-22 11:47:55] - Log from pilotlog.txt -
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | format EVNTtoHITS has no such key: dbData
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | wrong length of table data, x=[1677062542.0], y=[950365.0] (must be same and length>=4)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,165 | INFO     | payload/TRF did not report the number of read events
[2023-02-22 11:47:55] 2023-02-22 10:47:22,165 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-02-22 11:47:55] 2023-02-22 10:47:22,241 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/memory_monitor_summary.json (trf name=prmon)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,242 | INFO     | extracted standard info from prmon json
[2023-02-22 11:47:55] 2023-02-22 10:47:22,242 | INFO     | extracted standard memory fields from prmon json
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | ..............................
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . Timing measurements:
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . get job = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . initial setup = 2 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . payload setup = 30 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . stage-in = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . payload execution = 497 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . stage-out = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | ..............................
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/pilotlog.txt
[2023-02-22 11:47:55] 2023-02-22 10:47:22,264 | WARNING  | 
[2023-02-22 11:47:55] [begin log extracts]
[2023-02-22 11:47:55] - Log from pilotlog.txt -
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | format EVNTtoHITS has no such key: dbData
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2023-02-22 11:47:55] 2023-02-22 10:47:22,164 | WARNING  | wrong length of table data, x=[1677062542.0], y=[950365.0] (must be same and length>=4)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,165 | INFO     | payload/TRF did not report the number of read events
[2023-02-22 11:47:55] 2023-02-22 10:47:22,165 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-02-22 11:47:55] 2023-02-22 10:47:22,241 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/memory_monitor_summary.json (trf name=prmon)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,242 | INFO     | extracted standard info from prmon json
[2023-02-22 11:47:55] 2023-02-22 10:47:22,242 | INFO     | extracted standard memory fields from prmon json
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | ..............................
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . Timing measurements:
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . get job = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . initial setup = 2 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . payload setup = 30 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . stage-in = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . payload execution = 497 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | . stage-out = 0 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | ..............................
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2023-02-22 11:47:55] 2023-02-22 10:47:22,243 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/2/PanDA_Pilot-5761743202/pilotlog.txt
[2023-02-22 11:47:55] [end log extracts]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,264 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,264 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute 2023-02-22 11:45:18,032 CRITICAL Transform executor raised TransformValidationExcep
[2023-02-22 11:47:55] 2023-02-22 10:47:22,328 | INFO     | 
[2023-02-22 11:47:55] 2023-02-22 10:47:22,328 | INFO     | job summary report
[2023-02-22 11:47:55] 2023-02-22 10:47:22,328 | INFO     | --------------------------------------------------
[2023-02-22 11:47:55] 2023-02-22 10:47:22,328 | INFO     | PanDA job id: 5761743202
[2023-02-22 11:47:55] 2023-02-22 10:47:22,328 | INFO     | task id: NULL
[2023-02-22 11:47:55] 2023-02-22 10:47:22,328 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2023-02-22 11:45:18,032 CRITICAL Transform executor raised TransformValidationExceptio
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | status: LOG_TRANSFER = DONE 
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | pilot state: failed 
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | transexitcode: 65
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | exeerrorcode: 65
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | exitcode: 65
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algo
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | cpuconsumptiontime: 124 s
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | nevents: 0
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | neventsw: 0
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | pid: 12122
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | pgrp: 12122
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | corecount: 3
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | event service: False
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | sizes: {0: 2533250, 1: 2533456, 11: 2533484, 531: 2554015, 532: 2558342, 648: 2559136}
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | --------------------------------------------------
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | 
[2023-02-22 11:47:55] 2023-02-22 10:47:22,329 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2023-02-22 11:47:55] 2023-02-22 10:47:22,375 | INFO     | queue jobs had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,375 | INFO     | queue payloads had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,375 | INFO     | queue data_in had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,375 | INFO     | queue data_out had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue current_data_in had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue completed_jobids has 1 job(s)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | queue messages had 0 job(s) [purged]
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | job 5761743202 has completed (purged errors)
[2023-02-22 11:47:55] 2023-02-22 10:47:22,376 | INFO     | overall cleanup function is called
[2023-02-22 11:47:55] 2023-02-22 10:47:23,412 | INFO     | --- collectZombieJob: --- 10, [12122]
[2023-02-22 11:47:55] 2023-02-22 10:47:23,412 | INFO     | zombie collector trying to kill pid 12122
[2023-02-22 11:47:55] 2023-02-22 10:47:23,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-02-22 11:47:55] 2023-02-22 10:47:24,486 | INFO     | collected zombie processes
[2023-02-22 11:47:55] 2023-02-22 10:47:24,488 | INFO     | will now attempt to kill all subprocesses of pid=12122
[2023-02-22 11:47:55] 2023-02-22 10:47:24,594 | INFO     | process IDs to be killed: [12122] (in reverse order)
[2023-02-22 11:47:55] 2023-02-22 10:47:24,637 | WARNING  | found no corresponding commands to process id(s)
[2023-02-22 11:47:55] 2023-02-22 10:47:24,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2023-02-22 11:47:55] 2023-02-22 10:47:24,637 | INFO     | ready for new job
[2023-02-22 11:47:55] 2023-02-22 10:47:24,637 | INFO     | pilot has finished with previous job - re-establishing logging
[2023-02-22 11:47:55] 2023-02-22 10:47:24,638 | INFO     | ***************************************
[2023-02-22 11:47:55] 2023-02-22 10:47:24,638 | INFO     | ***  PanDA Pilot version 3.4.8 (5)  ***
[2023-02-22 11:47:55] 2023-02-22 10:47:24,638 | INFO     | ***************************************
[2023-02-22 11:47:55] 2023-02-22 10:47:24,638 | INFO     | 
[2023-02-22 11:47:55] 2023-02-22 10:47:24,638 | INFO     | pilot is running in a VM
[2023-02-22 11:47:55] 2023-02-22 10:47:24,638 | INFO     | architecture information:
[2023-02-22 11:47:55] 2023-02-22 10:47:24,735 | INFO     | 
[2023-02-22 11:47:55] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2023-02-22 11:47:55] Distributor ID:	CentOS
[2023-02-22 11:47:55] Description:	CentOS Linux release 7.9.2009 (Core)
[2023-02-22 11:47:55] Release:	7.9.2009
[2023-02-22 11:47:55] Codename:	Core
[2023-02-22 11:47:55] 2023-02-22 10:47:24,735 | INFO     | ***************************************
[2023-02-22 11:47:55] 2023-02-22 10:47:25,236 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2023-02-22 11:47:55] 2023-02-22 10:47:25,258 | INFO     | sufficient remaining disk space (38786826240 B)
[2023-02-22 11:47:55] 2023-02-22 10:47:25,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2023-02-22 11:47:55] 2023-02-22 10:47:25,259 | INFO     | [job] retrieve thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:25,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2023-02-22 11:47:55] 2023-02-22 10:47:26,014 | INFO     | [payload] execute_payloads thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,016 | INFO     | [job] validate thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,139 | INFO     | [monitor] control thread has ended
[2023-02-22 11:47:55] 2023-02-22 10:47:26,169 | INFO     | [data] copytool_in thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,188 | INFO     | [payload] validate_pre thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,210 | INFO     | [payload] failed_post thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,214 | INFO     | [payload] validate_post thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,248 | INFO     | [data] control thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,261 | INFO     | [data] copytool_out thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,417 | INFO     | [job] create_data_payload thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,577 | INFO     | [payload] control thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:26,584 | INFO     | [job] control thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:27,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2023-02-22 11:47:55] 2023-02-22 10:47:27,574 | INFO     | [job] queue monitor thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:28,075 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-02-22 11:47:55] 2023-02-22 10:47:31,124 | INFO     | [data] queue_monitor thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:39,316 | INFO     | job.realtimelogging is not enabled
[2023-02-22 11:47:55] 2023-02-22 10:47:39,316 | INFO     | [payload] run_realtimelog thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:54,676 | WARNING  | no jobs in monitored_payloads queue (waited for 62 s)
[2023-02-22 11:47:55] 2023-02-22 10:47:54,676 | INFO     | [job] job monitor thread has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:54,678 | INFO     | end of generic workflow (traces error code: 0)
[2023-02-22 11:47:55] 2023-02-22 10:47:54,679 | INFO     | traces error code: 0
[2023-02-22 11:47:55] 2023-02-22 10:47:54,679 | INFO     | pilot has finished
[2023-02-22 11:47:55] 2023-02-22 10:47:54,748 [wrapper] ==== pilot stdout END ====
[2023-02-22 11:47:55] 2023-02-22 10:47:54,760 [wrapper] ==== wrapper stdout RESUME ====
[2023-02-22 11:47:55] 2023-02-22 10:47:54,770 [wrapper] pilotpid: 8812
[2023-02-22 11:47:55] 2023-02-22 10:47:54,778 [wrapper] Pilot exit status: 0
[2023-02-22 11:47:55] 2023-02-22 10:47:54,815 [wrapper] pandaids: 5761743202
[2023-02-22 11:47:55] 2023-02-22 10:47:54,824 [wrapper] apfmon messages muted
[2023-02-22 11:47:55] 2023-02-22 10:47:54,829 [wrapper] Test setup, not cleaning
[2023-02-22 11:47:55] 2023-02-22 10:47:54,835 [wrapper] ==== wrapper stdout END ====
[2023-02-22 11:47:55] 2023-02-22 10:47:54,839 [wrapper] ==== wrapper stderr END ====
[2023-02-22 11:47:55] 2023-02-22 10:47:54,850 [wrapper] wrapperexiting ec=0, duration=735
[2023-02-22 11:47:55] 2023-02-22 10:47:54,855 [wrapper] apfmon messages muted
[2023-02-22 11:47:55]  *** Error codes and diagnostics ***
[2023-02-22 11:47:55]     "exeErrorCode": 65,
[2023-02-22 11:47:55]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2023-02-22 11:47:55]     "pilotErrorCode": 1305,
[2023-02-22 11:47:55]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-02-22 11:45:18,032 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2023-02-22 11:47:55]  *** Listing of results directory ***
[2023-02-22 11:47:55] totale 42524
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc     3906 feb 22 11:27 queuedata.json
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc   386707 feb 22 11:29 pilot3.tar.gz
[2023-02-22 11:47:55] -rwx------ 1 boinc boinc    26445 feb 22 11:29 runpilot2-wrapper.sh
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc      107 feb 22 11:34 wrapper_26015_x86_64-pc-linux-gnu
[2023-02-22 11:47:55] -rwxr-xr-x 1 boinc boinc     8273 feb 22 11:34 run_atlas
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc      112 feb 22 11:34 job.xml
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc     6025 feb 22 11:34 init_data.xml
[2023-02-22 11:47:55] -rw-r--r-- 2 boinc boinc 39611081 feb 22 11:34 EVNT.04972714._000022.pool.root.1
[2023-02-22 11:47:55] -rw-r--r-- 2 boinc boinc   398419 feb 22 11:34 input.tar.gz
[2023-02-22 11:47:55] drwxrwx--x 2 boinc boinc     4096 feb 22 11:34 shared
[2023-02-22 11:47:55] -rw-r--r-- 2 boinc boinc    17782 feb 22 11:34 start_atlas.sh
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc        0 feb 22 11:34 boinc_lockfile
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc     2751 feb 22 11:35 pandaJob.out
[2023-02-22 11:47:55] -rw------- 1 boinc boinc      416 feb 22 11:35 setup.sh.local
[2023-02-22 11:47:55] -rw------- 1 boinc boinc   902628 feb 22 11:36 agis_schedconf.cvmfs.json
[2023-02-22 11:47:55] -rw------- 1 boinc boinc  1701555 feb 22 11:36 agis_ddmendpoints.agis.ALL.json
[2023-02-22 11:47:55] drwx------ 4 boinc boinc     4096 feb 22 11:36 pilot3
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc      531 feb 22 11:45 boinc_task_state.xml
[2023-02-22 11:47:55] -rw------- 1 boinc boinc      995 feb 22 11:45 memory_monitor_summary.json
[2023-02-22 11:47:55] -rw------- 1 boinc boinc    75576 feb 22 11:45 d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log.tgz
[2023-02-22 11:47:55] -rw------- 1 boinc boinc     8082 feb 22 11:47 heartbeat.json
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc     8192 feb 22 11:47 boinc_mmap_file
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc       23 feb 22 11:47 wrapper_checkpoint.txt
[2023-02-22 11:47:55] -rw------- 1 boinc boinc     2935 feb 22 11:47 pilotlog.txt
[2023-02-22 11:47:55] -rw------- 1 boinc boinc    84692 feb 22 11:47 d160fd5e-1895-4476-ac3a-26643617348a_65472.1.job.log
[2023-02-22 11:47:55] -rw------- 1 boinc boinc      227 feb 22 11:47 output.list
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc      686 feb 22 11:47 runtime_log
[2023-02-22 11:47:55] -rw------- 1 boinc boinc   184320 feb 22 11:47 result.tar.gz
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc    10234 feb 22 11:47 runtime_log.err
[2023-02-22 11:47:55] -rw------- 1 boinc boinc      621 feb 22 11:47 n58MDmtY1o2n7Olcko1bjSoqABFKDmABFKDmgZyRDmUNOKDmcgAzdm.diag
[2023-02-22 11:47:55] -rw-r--r-- 1 boinc boinc    24023 feb 22 11:47 stderr.txt
[2023-02-22 11:47:55] No HITS result produced
[2023-02-22 11:47:55]  *** Contents of shared directory: ***
[2023-02-22 11:47:55] totale 39276
[2023-02-22 11:47:55] -rw-r--r-- 2 boinc boinc 39611081 feb 22 11:34 ATLAS.root_0
[2023-02-22 11:47:55] -rw-r--r-- 2 boinc boinc   398419 feb 22 11:34 input.tar.gz
[2023-02-22 11:47:55] -rw-r--r-- 2 boinc boinc    17782 feb 22 11:34 start_atlas.sh
[2023-02-22 11:47:55] -rw------- 1 boinc boinc   184320 feb 22 11:47 result.tar.gz
11:47:56 (1825): run_atlas exited; CPU time 57.505599
11:47:56 (1825): called boinc_finish(0)

</stderr_txt>
]]>

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