Name 0VoKDm8U0r2n7Olcko1bjSoqABFKDmABFKDm7AsVDmkLFKDmKeAa9n_0
Workunit 2283536
Created 2 Mar 2023, 15:58:22 UTC
Sent 2 Mar 2023, 15:59:32 UTC
Report deadline 9 Mar 2023, 15:59:32 UTC
Received 2 Mar 2023, 16:17:45 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4008
Run time 17 min 29 sec
CPU time 13 min 40 sec
Validate state Valid
Credit 13.63
Device peak FLOPS 3.49 GFLOPS
Application version ATLAS Simulation v1.25 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.41 GB
Peak swap size 2.12 GB
Peak disk usage 78.05 MB

Stderr output

<core_client_version>7.16.1</core_client_version>
<![CDATA[
<stderr_txt>
17:00:04 (26567): wrapper (7.7.26015): starting
17:00:04 (26567): wrapper: running run_atlas (--nthreads 1)
[2023-03-02 17:00:04] Arguments: --nthreads 1
[2023-03-02 17:00:04] Threads: 1
[2023-03-02 17:00:04] Checking for CVMFS
[2023-03-02 17:00:05] Probing /cvmfs/atlas.cern.ch... OK
[2023-03-02 17:00:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-03-02 17:00:05] Running cvmfs_config stat atlas.cern.ch
[2023-03-02 17:00:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-03-02 17:00:05] 2.6.3.0 3427 37 47548 116262 2 64 2799535 2816000 666 65024 0 193514 99.9819 58019 1022 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1
[2023-03-02 17:00:05] CVMFS is ok
[2023-03-02 17:00:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-03-02 17:00:05] Checking for apptainer binary...
[2023-03-02 17:00:05] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2023-03-02 17:00:05] apptainer is not installed, using version from CVMFS
[2023-03-02 17:00:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-03-02 17:00:05] HPi7COS7
[2023-03-02 17:00:05] apptainer works
[2023-03-02 17:00:06] Starting ATLAS job with PandaID=5771558292
[2023-03-02 17:00:06] Try creating a directory in /tmp
[2023-03-02 17:00:06] /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /tmp/tmp.XXXXX
[2023-03-02 17:00:06] /tmp/tmp.ecqi3
[2023-03-02 17:00:06] Try creating a directory in /var/tmp
[2023-03-02 17:00:06] /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /var/tmp/tmp.XXXXX
[2023-03-02 17:00:06] /var/tmp/tmp.sFIK6
[2023-03-02 17:00:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-03-02 17:17:30]  *** The last 200 lines of the pilot log: ***
[2023-03-02 17:17:30] 2023-03-02 16:16:42,160 | INFO     | pilot.util.features              | __init__                  | collecting machine features
[2023-03-02 17:17:30] 2023-03-02 16:16:42,160 | INFO     | pilot.util.features              | set                       | machine features path does not exist (path="")
[2023-03-02 17:17:30] 2023-03-02 16:16:42,160 | INFO     | pilot.util.features              | __init__                  | collecting job features
[2023-03-02 17:17:30] 2023-03-02 16:16:42,160 | INFO     | pilot.util.features              | set                       | job features path does not exist (path="")
[2023-03-02 17:17:30] 2023-03-02 16:16:42,161 | DEBUG    | pilot.api.analytics              | get_fitted_data           | removing tails from data to be fitted
[2023-03-02 17:17:30] 2023-03-02 16:16:42,161 | INFO     | pilot.api.analytics              | get_fitted_data           | fitting pss+swap vs Time
[2023-03-02 17:17:30] 2023-03-02 16:16:42,161 | INFO     | pilot.api.analytics              | get_fitted_data           | current memory leak: -138.77 B/s (using 8 data points, chi2=0.00)
[2023-03-02 17:17:30] 2023-03-02 16:16:42,162 | DEBUG    | pilot.user.atlas.jobmetrics      | get_job_metrics           | job metrics="actualCoreCount=0.88 nEvents=2 dbTime=8.9 dbData=4274626 workDirSize=847989 leak=-138.7
[2023-03-02 17:17:30] 2023-03-02 16:16:42,162 | INFO     | pilot.control.job                | get_data_structure        | total number of processed events: 2 (read)
[2023-03-02 17:17:30] 2023-03-02 16:16:42,163 | INFO     | pilot.util.container             | print_executable          | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-03-02 17:17:30] 2023-03-02 16:16:42,322 | INFO     | pilot.user.atlas.utilities       | get_memory_values         | using path: /var/lib/boinc/slots/1/PanDA_Pilot-5771558292/memory_monitor_summary.json (trf name=prmo
[2023-03-02 17:17:30] 2023-03-02 16:16:42,323 | DEBUG    | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Avg': {'nprocs': 5.0, 'nthreads': 6.666, 'pss': 1271286.0, 'rchar': 67048810.0,
[2023-03-02 17:17:30] 2023-03-02 16:16:42,323 | INFO     | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from prmon json
[2023-03-02 17:17:30] 2023-03-02 16:16:42,323 | INFO     | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from prmon json
[2023-03-02 17:17:30] 2023-03-02 16:16:42,323 | INFO     | pilot.util.timing                | timing_report             | ..............................
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | . Timing measurements:
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | . get job = 0 s
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | . initial setup = 2 s
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | . payload setup = 15 s
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | . stage-in = 0 s
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | . payload execution = 906 s
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | . stage-out = 0 s
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | INFO     | pilot.util.timing                | timing_report             | ..............................
[2023-03-02 17:17:30] 2023-03-02 16:16:42,324 | DEBUG    | pilot.control.job                | send_state                | data={'jobId': '5771558292', 'state': 'finished', 'timestamp': '2023-03-02T17:16:42+01:00', 'siteNam
[2023-03-02 17:17:30] 2023-03-02 16:16:42,325 | DEBUG    | pilot.control.job                | write_heartbeat_to_file   | heartbeat dictionary: {'jobId': '5771558292', 'state': 'finished', 'timestamp': '2023-03-02T17:16:42
[2023-03-02 17:17:30] 2023-03-02 16:16:42,325 | DEBUG    | pilot.control.job                | write_heartbeat_to_file   | wrote heartbeat to file: /var/lib/boinc/slots/1/heartbeat.json
[2023-03-02 17:17:30] 2023-03-02 16:16:42,453 | INFO     | pilot.control.job                | make_job_report           | 
[2023-03-02 17:17:30] 2023-03-02 16:16:42,453 | INFO     | pilot.control.job                | make_job_report           | job summary report
[2023-03-02 17:17:30] 2023-03-02 16:16:42,453 | INFO     | pilot.control.job                | make_job_report           | --------------------------------------------------
[2023-03-02 17:17:30] 2023-03-02 16:16:42,453 | INFO     | pilot.control.job                | make_job_report           | PanDA job id: 5771558292
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | task id: NULL
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | errors: (none)
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | status: LOG_TRANSFER = DONE 
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | pilot state: finished 
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | transexitcode: 0
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | exeerrorcode: 0
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | exeerrordiag: 
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | exitcode: 0
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | exitmsg: OK
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | cpuconsumptiontime: 836 s
[2023-03-02 17:17:30] 2023-03-02 16:16:42,454 | INFO     | pilot.control.job                | make_job_report           | nevents: 2
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | neventsw: 0
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | pid: 2691
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | pgrp: 2691
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | corecount: 1
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | event service: False
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | sizes: {0: 2537158, 1: 2537413, 2: 2537647, 12: 2537647, 926: 2557975, 928: 2567025, 931: 2567209, 9
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | --------------------------------------------------
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | INFO     | pilot.control.job                | make_job_report           | 
[2023-03-02 17:17:30] 2023-03-02 16:16:42,455 | DEBUG    | pilot.control.job                | has_job_completed         | ls -lF /var/lib/boinc/slots/1:
[2023-03-02 17:17:30] 
[2023-03-02 17:17:30] 2023-03-02 16:16:42,456 | INFO     | pilot.util.container             | print_executable          | executing command: ls -lF /var/lib/boinc/slots/1
[2023-03-02 17:17:30] 2023-03-02 16:16:42,490 | DEBUG    | pilot.control.job                | has_job_completed         | total 42056
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc      131 Mar  2 17:00 0VoKDm8U0r2n7Olcko1bjSoqABFKDmABFKDm7AsVDmkLFKDmKeAa9n.diag
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   213803 Mar  2 17:16 5f53eb95-eb70-4935-9703-d05b30f9ca85_31341.1.job.log
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   163612 Mar  2 17:16 5f53eb95-eb70-4935-9703-d05b30f9ca85_31341.1.job.log.tgz
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc 37224345 Mar  2 17:00 EVNT.04972714._000026.pool.root.1
[2023-03-02 17:17:30] drwxrwx---. 2 boinc boinc     4096 Mar  2 17:16 PanDA_Pilot-5771558292/
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc  1704867 Mar  2 17:00 agis_ddmendpoints.agis.ALL.json
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   962893 Mar  2 17:00 agis_schedconf.cvmfs.json
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc        0 Mar  2 17:00 boinc_lockfile
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     8192 Mar  2 17:16 boinc_mmap_file
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      532 Mar  2 17:16 boinc_task_state.xml
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc     6621 Mar  2 17:16 heartbeat.json
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     6043 Mar  2 17:00 init_data.xml
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc   405264 Mar  2 17:00 input.tar.gz
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      112 Mar  2 17:00 job.xml
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc     1019 Mar  2 17:16 memory_monitor_summary.json
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc  1520086 Mar  2 17:16 output.1.5f53eb95-eb70-4935-9703-d05b30f9ca85_31341.pool.root
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc      464 Mar  2 17:16 output.list
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     2667 Mar  2 17:00 pandaJob.out
[2023-03-02 17:17:30] drwx------. 4 boinc boinc      267 Mar  2 17:00 pilot3/
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   394908 Mar  2 16:58 pilot3.tar.gz
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   193706 Mar  2 17:16 pilotlog.txt
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     4239 Mar  2 16:58 queuedata.json
[2023-03-02 17:17:30] -rwxr-xr-x. 1 boinc boinc     8273 Mar  2 17:00 run_atlas*
[2023-03-02 17:17:30] -rwx------. 1 boinc boinc    26445 Mar  2 16:58 runpilot2-wrapper.sh*
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      407 Mar  2 17:00 runtime_log
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     7034 Mar  2 17:00 runtime_log.err
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc      449 Mar  2 17:00 setup.sh.local
[2023-03-02 17:17:30] drwxrwx--x. 2 boinc boinc       68 Mar  2 17:00 shared/
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc    17098 Mar  2 17:00 start_atlas.sh
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     2422 Mar  2 17:00 stderr.txt
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      107 Mar  2 17:00 wrapper_26015_x86_64-pc-linux-gnu
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc       25 Mar  2 17:16 wrapper_checkpoint.txt
[2023-03-02 17:17:30] 2023-03-02 16:16:42,490 | INFO     | pilot.util.queuehandling         | queue_report              | queue jobs had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,490 | INFO     | pilot.util.queuehandling         | queue_report              | queue payloads had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue data_in had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue data_out had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue current_data_in had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue validated_jobs had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue validated_payloads had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue monitored_payloads had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_jobs had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_payloads had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_data_in had 1 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_data_out had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,491 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_jobs had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_payloads had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_data_in had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_data_out had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.queuehandling         | queue_report              | queue completed_jobs had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.queuehandling         | queue_report              | queue completed_jobids has 1 job(s)
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.queuehandling         | queue_report              | queue realtimelog_payloads had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.queuehandling         | queue_report              | queue messages had 0 job(s) [purged]
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.control.job                | has_job_completed         | job 5771558292 has completed (purged errors)
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | DEBUG    | pilot.util.realtimelogger        | cleanup                   | attempting real-time logger cleanup
[2023-03-02 17:17:30] 2023-03-02 16:16:42,492 | INFO     | pilot.util.processes             | cleanup                   | overall cleanup function is called
[2023-03-02 17:17:30] 2023-03-02 16:16:42,494 | DEBUG    | pilot.util.processes             | cleanup                   | work directory was removed: /var/lib/boinc/slots/1/PanDA_Pilot-5771558292
[2023-03-02 17:17:30] 2023-03-02 16:16:43,514 | INFO     | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [2691]
[2023-03-02 17:17:30] 2023-03-02 16:16:43,514 | INFO     | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 2691
[2023-03-02 17:17:30] 2023-03-02 16:16:43,514 | INFO     | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-03-02 17:17:30] 2023-03-02 16:16:44,527 | INFO     | pilot.util.processes             | cleanup                   | collected zombie processes
[2023-03-02 17:17:30] 2023-03-02 16:16:44,527 | INFO     | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=2691
[2023-03-02 17:17:30] 2023-03-02 16:16:44,594 | INFO     | pilot.util.processes             | kill_processes            | process IDs to be killed: [2691] (in reverse order)
[2023-03-02 17:17:30] 2023-03-02 16:16:44,637 | WARNING  | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
[2023-03-02 17:17:30] 2023-03-02 16:16:44,638 | INFO     | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
[2023-03-02 17:17:30] 2023-03-02 16:16:44,638 | DEBUG    | pilot.util.queuehandling         | purge_queue               | queue purged
[2023-03-02 17:17:30] 2023-03-02 16:16:44,638 | INFO     | pilot.control.job                | retrieve                  | ready for new job
[2023-03-02 17:17:30] 2023-03-02 16:16:44,638 | INFO     | root                             | retrieve                  | pilot has finished with previous job - re-establishing logging
[2023-03-02 17:17:30] 2023-03-02 16:16:44,639 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-03-02 17:17:30] 2023-03-02 16:16:44,639 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ***  PanDA Pilot version 3.5.0 (31)  ***
[2023-03-02 17:17:30] 2023-03-02 16:16:44,639 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-03-02 17:17:30] 2023-03-02 16:16:44,639 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | 
[2023-03-02 17:17:30] 2023-03-02 16:16:44,639 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | pilot is running in a VM
[2023-03-02 17:17:30] 2023-03-02 16:16:44,639 | INFO     | pilot.util.auxiliary             | display_architecture_info | architecture information:
[2023-03-02 17:17:30] 2023-03-02 16:16:44,785 | INFO     | pilot.util.auxiliary             | display_architecture_info | 
[2023-03-02 17:17:30] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2023-03-02 17:17:30] Distributor ID:	CentOS
[2023-03-02 17:17:30] Description:	CentOS Linux release 7.9.2009 (Core)
[2023-03-02 17:17:30] Release:	7.9.2009
[2023-03-02 17:17:30] Codename:	Core
[2023-03-02 17:17:30] 2023-03-02 16:16:44,786 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-03-02 17:17:30] 2023-03-02 16:16:45,289 | DEBUG    | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc/slots/1
[2023-03-02 17:17:30] 2023-03-02 16:16:45,289 | INFO     | pilot.util.container             | print_executable          | executing command: df -mP /var/lib/boinc/slots/1
[2023-03-02 17:17:30] 2023-03-02 16:16:45,307 | DEBUG    | pilot.util.workernode            | get_local_disk_space      | stdout=Filesystem              1048576-blocks  Used Available Capacity Mounted on
[2023-03-02 17:17:30] /dev/mapper/centos-root          22002 10122     11881      47% /var/lib/boinc/slots/1
[2023-03-02 17:17:30] 2023-03-02 16:16:45,308 | DEBUG    | pilot.util.workernode            | get_local_disk_space      | stderr=
[2023-03-02 17:17:30] 2023-03-02 16:16:45,308 | INFO     | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (12458131456 B)
[2023-03-02 17:17:30] 2023-03-02 16:16:45,308 | WARNING  | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
[2023-03-02 17:17:30] 2023-03-02 16:16:45,308 | DEBUG    | pilot.control.job                | retrieve                  | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:45,308 | INFO     | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:45,309 | WARNING  | pilot.control.monitor            | control                   | aborting monitor loop since graceful_stop has been set
[2023-03-02 17:17:30] 2023-03-02 16:16:45,309 | INFO     | pilot.control.monitor            | control                   | [monitor] control thread has ended
[2023-03-02 17:17:30] 2023-03-02 16:16:45,413 | DEBUG    | pilot.control.payload            | failed_post               | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:45,413 | INFO     | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:45,775 | DEBUG    | pilot.control.data               | copytool_in               | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:45,776 | INFO     | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:45,975 | DEBUG    | pilot.control.payload            | validate_post             | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:45,975 | INFO     | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:45,976 | DEBUG    | pilot.control.job                | validate                  | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:45,976 | INFO     | pilot.control.job                | validate                  | [job] validate thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:46,123 | DEBUG    | pilot.control.data               | control                   | data control ending since graceful_stop has been set
[2023-03-02 17:17:30] 2023-03-02 16:16:46,123 | DEBUG    | pilot.control.data               | control                   | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:46,124 | INFO     | pilot.control.data               | control                   | [data] control thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:46,124 | WARNING  | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
[2023-03-02 17:17:30] 2023-03-02 16:16:46,369 | DEBUG    | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
[2023-03-02 17:17:30] 2023-03-02 16:16:46,369 | DEBUG    | pilot.control.payload            | control                   | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:46,370 | INFO     | pilot.control.payload            | control                   | [payload] control thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:46,376 | DEBUG    | pilot.control.job                | create_data_payload       | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:46,376 | INFO     | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:46,377 | DEBUG    | pilot.control.payload            | validate_pre              | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:46,377 | INFO     | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:46,667 | DEBUG    | pilot.control.job                | control                   | job control ending since graceful_stop has been set
[2023-03-02 17:17:30] 2023-03-02 16:16:46,668 | DEBUG    | pilot.control.job                | control                   | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:46,668 | INFO     | pilot.control.job                | control                   | [job] control thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:46,678 | DEBUG    | pilot.control.payload            | execute_payloads          | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:46,678 | INFO     | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:47,048 | WARNING  | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-03-02 17:17:30] 2023-03-02 16:16:47,140 | DEBUG    | pilot.control.data               | copytool_out              | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:47,140 | INFO     | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:47,472 | WARNING  | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
[2023-03-02 17:17:30] 2023-03-02 16:16:47,472 | DEBUG    | pilot.control.job                | queue_monitor             | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:47,472 | INFO     | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:50,058 | DEBUG    | pilot.control.data               | queue_monitoring          | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:50,058 | INFO     | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:16:55,544 | INFO     | pilot.control.payload            | get_logging_info          | job.realtimelogging is not enabled
[2023-03-02 17:17:30] 2023-03-02 16:16:55,544 | DEBUG    | pilot.control.payload            | run_realtimelog           | real-time logging not needed at this point
[2023-03-02 17:17:30] 2023-03-02 16:16:55,544 | DEBUG    | pilot.control.payload            | run_realtimelog           | realtime logger was not found, waiting ..
[2023-03-02 17:17:30] 2023-03-02 16:16:55,544 | DEBUG    | pilot.control.payload            | run_realtimelog           | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:16:55,544 | INFO     | pilot.control.payload            | run_realtimelog           | [payload] run_realtimelog thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:17:28,865 | WARNING  | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 80 s)
[2023-03-02 17:17:30] 2023-03-02 16:17:28,865 | DEBUG    | pilot.control.job                | job_monitor               | will not set job_aborted yet
[2023-03-02 17:17:30] 2023-03-02 16:17:28,865 | INFO     | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
[2023-03-02 17:17:30] 2023-03-02 16:17:29,029 | DEBUG    | pilot.util.processes             | threads_aborted           | aborting since only the main Pilot thread is still running (total thread count=1 with 0 daemon threa
[2023-03-02 17:17:30] 2023-03-02 16:17:29,029 | DEBUG    | pilot.workflow.generic           | run                       | all relevant threads have aborted (thread count=1)
[2023-03-02 17:17:30] 2023-03-02 16:17:29,029 | INFO     | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
[2023-03-02 17:17:30] 2023-03-02 16:17:29,030 | INFO     | root                             | wrap_up                   | traces error code: 0
[2023-03-02 17:17:30] 2023-03-02 16:17:29,030 | INFO     | root                             | wrap_up                   | pilot has finished
[2023-03-02 17:17:30] 2023-03-02 16:17:29,094 [wrapper] ==== pilot stdout END ====
[2023-03-02 17:17:30] 2023-03-02 16:17:29,099 [wrapper] ==== wrapper stdout RESUME ====
[2023-03-02 17:17:30] 2023-03-02 16:17:29,103 [wrapper] pilotpid: 31805
[2023-03-02 17:17:30] 2023-03-02 16:17:29,109 [wrapper] Pilot exit status: 0
[2023-03-02 17:17:30] 2023-03-02 16:17:29,160 [wrapper] pandaids: 5771558292
[2023-03-02 17:17:30] 2023-03-02 16:17:29,170 [wrapper] apfmon messages muted
[2023-03-02 17:17:30] 2023-03-02 16:17:29,174 [wrapper] Test setup, not cleaning
[2023-03-02 17:17:30] 2023-03-02 16:17:29,178 [wrapper] ==== wrapper stdout END ====
[2023-03-02 17:17:30] 2023-03-02 16:17:29,182 [wrapper] ==== wrapper stderr END ====
[2023-03-02 17:17:30] 2023-03-02 16:17:29,190 [wrapper] wrapperexiting ec=0, duration=1042
[2023-03-02 17:17:30] 2023-03-02 16:17:29,194 [wrapper] apfmon messages muted
[2023-03-02 17:17:30]  *** Error codes and diagnostics ***
[2023-03-02 17:17:30]     "exeErrorCode": 0,
[2023-03-02 17:17:30]     "exeErrorDiag": "",
[2023-03-02 17:17:30]     "pilotErrorCode": 0,
[2023-03-02 17:17:30]     "pilotErrorDiag": "",
[2023-03-02 17:17:30]  *** Listing of results directory ***
[2023-03-02 17:17:30] insgesamt 43704
[2023-03-02 17:17:30] -rwx------. 1 boinc boinc    26445  2. M&#195;&#164;r 16:58 runpilot2-wrapper.sh
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     4239  2. M&#195;&#164;r 16:58 queuedata.json
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   394908  2. M&#195;&#164;r 16:58 pilot3.tar.gz
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      107  2. M&#195;&#164;r 17:00 wrapper_26015_x86_64-pc-linux-gnu
[2023-03-02 17:17:30] -rwxr-xr-x. 1 boinc boinc     8273  2. M&#195;&#164;r 17:00 run_atlas
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      112  2. M&#195;&#164;r 17:00 job.xml
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     6043  2. M&#195;&#164;r 17:00 init_data.xml
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc 37224345  2. M&#195;&#164;r 17:00 EVNT.04972714._000026.pool.root.1
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc    17098  2. M&#195;&#164;r 17:00 start_atlas.sh
[2023-03-02 17:17:30] drwxrwx--x. 2 boinc boinc       68  2. M&#195;&#164;r 17:00 shared
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc   405264  2. M&#195;&#164;r 17:00 input.tar.gz
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc        0  2. M&#195;&#164;r 17:00 boinc_lockfile
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     2667  2. M&#195;&#164;r 17:00 pandaJob.out
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc      449  2. M&#195;&#164;r 17:00 setup.sh.local
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   962893  2. M&#195;&#164;r 17:00 agis_schedconf.cvmfs.json
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc  1704867  2. M&#195;&#164;r 17:00 agis_ddmendpoints.agis.ALL.json
[2023-03-02 17:17:30] drwx------. 4 boinc boinc      267  2. M&#195;&#164;r 17:00 pilot3
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc  1520086  2. M&#195;&#164;r 17:16 output.1.5f53eb95-eb70-4935-9703-d05b30f9ca85_31341.pool.root
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc     1019  2. M&#195;&#164;r 17:16 memory_monitor_summary.json
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   163612  2. M&#195;&#164;r 17:16 5f53eb95-eb70-4935-9703-d05b30f9ca85_31341.1.job.log.tgz
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      532  2. M&#195;&#164;r 17:16 boinc_task_state.xml
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc     6621  2. M&#195;&#164;r 17:16 heartbeat.json
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc     9050  2. M&#195;&#164;r 17:17 pilotlog.txt
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc   230878  2. M&#195;&#164;r 17:17 5f53eb95-eb70-4935-9703-d05b30f9ca85_31341.1.job.log
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc      464  2. M&#195;&#164;r 17:17 output.list
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc      748  2. M&#195;&#164;r 17:17 runtime_log
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc  1935360  2. M&#195;&#164;r 17:17 result.tar.gz
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc    11145  2. M&#195;&#164;r 17:17 runtime_log.err
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc      633  2. M&#195;&#164;r 17:17 0VoKDm8U0r2n7Olcko1bjSoqABFKDmABFKDm7AsVDmkLFKDmKeAa9n.diag
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc     8192  2. M&#195;&#164;r 17:17 boinc_mmap_file
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc       25  2. M&#195;&#164;r 17:17 wrapper_checkpoint.txt
[2023-03-02 17:17:30] -rw-r--r--. 1 boinc boinc    31197  2. M&#195;&#164;r 17:17 stderr.txt
[2023-03-02 17:17:30] HITS file was successfully produced:
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc 1520086  2. M&#195;&#164;r 17:16 shared/HITS.pool.root.1
[2023-03-02 17:17:30]  *** Contents of shared directory: ***
[2023-03-02 17:17:30] insgesamt 40148
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc 37224345  2. M&#195;&#164;r 17:00 ATLAS.root_0
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc    17098  2. M&#195;&#164;r 17:00 start_atlas.sh
[2023-03-02 17:17:30] -rw-r--r--. 2 boinc boinc   405264  2. M&#195;&#164;r 17:00 input.tar.gz
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc  1520086  2. M&#195;&#164;r 17:16 HITS.pool.root.1
[2023-03-02 17:17:30] -rw-------. 1 boinc boinc  1935360  2. M&#195;&#164;r 17:17 result.tar.gz
17:17:32 (26567): run_atlas exited; CPU time 820.433313
17:17:32 (26567): called boinc_finish(0)

</stderr_txt>
]]>


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