Name e5uMDmKLBu2n7Olcko1bjSoqABFKDmABFKDm7AsVDmjrFKDmlD4XGm_0
Workunit 2285097
Created 8 Mar 2023, 15:57:13 UTC
Sent 8 Mar 2023, 16:04:28 UTC
Report deadline 15 Mar 2023, 16:04:28 UTC
Received 8 Mar 2023, 16:20:16 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4351
Run time 14 min 29 sec
CPU time 9 min 8 sec
Validate state Valid
Credit 5.93
Device peak FLOPS 2.95 GFLOPS
Application version ATLAS Simulation v3.00 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.48 GB
Peak swap size 2.14 GB
Peak disk usage 36.41 MB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:04:38 (163788): wrapper (7.7.26015): starting
17:04:38 (163788): wrapper: running run_atlas (--nthreads 1)
[2023-03-08 17:04:38] Arguments: --nthreads 1
[2023-03-08 17:04:38] Threads: 1
[2023-03-08 17:04:38] Checking for CVMFS
[2023-03-08 17:04:57] Probing /cvmfs/atlas.cern.ch... OK
[2023-03-08 17:05:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2023-03-08 17:05:13] Running cvmfs_config stat atlas.cern.ch
[2023-03-08 17:05:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2023-03-08 17:05:14] 2.10.1.0 164021 0 31200 116499 3 1 2356231 4096001 0 130560 0 0 100.000 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1
[2023-03-08 17:05:14] CVMFS is ok
[2023-03-08 17:05:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2023-03-08 17:05:14] Checking for apptainer binary...
[2023-03-08 17:05:14] Using apptainer found in PATH at /usr/bin/apptainer
[2023-03-08 17:05:14] Running /usr/bin/apptainer --version
[2023-03-08 17:05:14] apptainer version 1.1.6-1.el8
[2023-03-08 17:05:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2023-03-08 17:05:14] fx8s
[2023-03-08 17:05:14] apptainer works
[2023-03-08 17:06:04] Starting ATLAS job with PandaID=5777374300
[2023-03-08 17:06:04] Try creating a directory in /tmp
[2023-03-08 17:06:04] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /tmp/tmp.XXXXX
[2023-03-08 17:06:04] /usr/bin/mktemp: failed to create file via template '/tmp/tmp.XXXXX': Read-only file system
[2023-03-08 17:06:04] mktemp /tmp failed
[2023-03-08 17:06:04] Try creating a directory in /var/tmp
[2023-03-08 17:06:04] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7  mktemp /var/tmp/tmp.XXXXX
[2023-03-08 17:06:04] /usr/bin/mktemp: failed to create file via template '/var/tmp/tmp.XXXXX': Read-only file system
[2023-03-08 17:06:04] mktemp /var/tmp failed
[2023-03-08 17:06:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2023-03-08 17:19:04]  *** The last 200 lines of the pilot log: ***
[2023-03-08 17:19:04] Virtualization:        AMD-V
[2023-03-08 17:19:04] Hypervisor vendor:     KVM
[2023-03-08 17:19:04] Virtualization type:   full
[2023-03-08 17:19:04] L1d cache:             16K
[2023-03-08 17:19:04] L1i cache:             64K
[2023-03-08 17:19:04] L2 cache:              2048K
[2023-03-08 17:19:04] L3 cache:              8192K
[2023-03-08 17:19:04] NUMA node0 CPU(s):     0
[2023-03-08 17:19:04] Flags:                 fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt rdtscp lm constant_tsc rep_good nopl nonstop_tsc 
[2023-03-08 17:19:04] 2023-03-08 16:18:14,299 | INFO     | pilot.util.container             | print_executable          | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2023-03-08 17:19:04] 2023-03-08 16:18:14,319 | INFO     | pilot.user.atlas.utilities       | get_memory_values         | using path: /var/lib/boinc/slots/0/PanDA_Pilot-5777374300/memory_monitor_summary.json (trf name=prmo
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | DEBUG    | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Avg': {'nprocs': 4.636, 'nthreads': 5.454, 'pss': 1273713.0, 'rchar': 94274852.
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from prmon json
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from prmon json
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.util.timing                | timing_report             | ..............................
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.util.timing                | timing_report             | . Timing measurements:
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.util.timing                | timing_report             | . get job = 0 s
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.util.timing                | timing_report             | . initial setup = 2 s
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.util.timing                | timing_report             | . payload setup = 7 s
[2023-03-08 17:19:04] 2023-03-08 16:18:14,321 | INFO     | pilot.util.timing                | timing_report             | . stage-in = 0 s
[2023-03-08 17:19:04] 2023-03-08 16:18:14,322 | INFO     | pilot.util.timing                | timing_report             | . payload execution = 639 s
[2023-03-08 17:19:04] 2023-03-08 16:18:14,322 | INFO     | pilot.util.timing                | timing_report             | . stage-out = 0 s
[2023-03-08 17:19:04] 2023-03-08 16:18:14,322 | INFO     | pilot.util.timing                | timing_report             | ..............................
[2023-03-08 17:19:04] 2023-03-08 16:18:14,322 | DEBUG    | pilot.control.job                | send_state                | data={'jobId': '5777374300', 'state': 'finished', 'timestamp': '2023-03-08T17:18:14+01:00', 'siteNam
[2023-03-08 17:19:04] 2023-03-08 16:18:14,323 | DEBUG    | pilot.control.job                | write_heartbeat_to_file   | heartbeat dictionary: {'jobId': '5777374300', 'state': 'finished', 'timestamp': '2023-03-08T17:18:14
[2023-03-08 17:19:04] 2023-03-08 16:18:14,323 | DEBUG    | pilot.control.job                | write_heartbeat_to_file   | wrote heartbeat to file: /var/lib/boinc/slots/0/heartbeat.json
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | 
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | job summary report
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | --------------------------------------------------
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | PanDA job id: 5777374300
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | task id: NULL
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | errors: (none)
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | status: LOG_TRANSFER = DONE 
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | pilot state: finished 
[2023-03-08 17:19:04] 2023-03-08 16:18:14,421 | INFO     | pilot.control.job                | make_job_report           | transexitcode: 0
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | exeerrorcode: 0
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | exeerrordiag: 
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | exitcode: 0
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | exitmsg: OK
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | cpuconsumptiontime: 556 s
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | nevents: 2
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | neventsw: 0
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | pid: 172511
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | pgrp: 172511
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | corecount: 1
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | event service: False
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | sizes: {0: 2538533, 1: 2538938, 11: 2538938, 650: 2561050, 651: 2570156, 654: 2570322}
[2023-03-08 17:19:04] 2023-03-08 16:18:14,422 | INFO     | pilot.control.job                | make_job_report           | --------------------------------------------------
[2023-03-08 17:19:04] 2023-03-08 16:18:14,423 | INFO     | pilot.control.job                | make_job_report           | 
[2023-03-08 17:19:04] 2023-03-08 16:18:14,423 | DEBUG    | pilot.control.job                | has_job_completed         | ls -lF /var/lib/boinc/slots/0:
[2023-03-08 17:19:04] 
[2023-03-08 17:19:04] 2023-03-08 16:18:14,423 | INFO     | pilot.util.container             | print_executable          | executing command: ls -lF /var/lib/boinc/slots/0
[2023-03-08 17:19:04] 2023-03-08 16:18:14,437 | DEBUG    | pilot.control.job                | has_job_completed         | total 42540
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   202850 Mar  8 17:18 1b53af08-c3c6-4305-96c4-080cd7251084_15484.1.job.log
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   162143 Mar  8 17:18 1b53af08-c3c6-4305-96c4-080cd7251084_15484.1.job.log.tgz
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc 37727106 Mar  8 17:04 EVNT.04972714._000037.pool.root.1
[2023-03-08 17:19:04] drwxrwx---. 2 boinc boinc     4096 Mar  8 17:18 PanDA_Pilot-5777374300/
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc  1705676 Mar  8 17:07 agis_ddmendpoints.agis.ALL.json
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   955971 Mar  8 17:07 agis_schedconf.cvmfs.json
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc        0 Mar  8 17:04 boinc_lockfile
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     8192 Mar  8 17:17 boinc_mmap_file
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      532 Mar  8 17:17 boinc_task_state.xml
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc      127 Mar  8 17:06 e5uMDmKLBu2n7Olcko1bjSoqABFKDmABFKDm7AsVDmjrFKDmlD4XGm.diag
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc     7713 Mar  8 17:18 heartbeat.json
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     6139 Mar  8 17:04 init_data.xml
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc   408376 Mar  8 17:04 input.tar.gz
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      112 Mar  8 17:04 job.xml
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc     1011 Mar  8 17:18 memory_monitor_summary.json
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc  1376701 Mar  8 17:18 output.1.1b53af08-c3c6-4305-96c4-080cd7251084_15484.pool.root
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc      464 Mar  8 17:18 output.list
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     2663 Mar  8 17:06 pandaJob.out
[2023-03-08 17:19:04] drwx------. 4 boinc boinc     4096 Mar  8 17:07 pilot3/
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   397721 Mar  8 16:57 pilot3.tar.gz
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   183105 Mar  8 17:18 pilotlog.txt
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     4239 Mar  8 16:57 queuedata.json
[2023-03-08 17:19:04] -rwxr-xr-x. 1 boinc boinc     8343 Mar  8 17:04 run_atlas*
[2023-03-08 17:19:04] -rwx------. 1 boinc boinc    26445 Mar  8 16:57 runpilot2-wrapper.sh*
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      407 Mar  8 17:06 runtime_log
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     7026 Mar  8 17:06 runtime_log.err
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc      449 Mar  8 17:06 setup.sh.local
[2023-03-08 17:19:04] drwxrwx--x. 2 boinc boinc       68 Mar  8 17:04 shared/
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc    17098 Mar  8 17:04 start_atlas.sh
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     2405 Mar  8 17:06 stderr.txt
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      107 Mar  8 17:04 wrapper_26015_x86_64-pc-linux-gnu
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc       24 Mar  8 17:17 wrapper_checkpoint.txt
[2023-03-08 17:19:04] 2023-03-08 16:18:14,437 | INFO     | pilot.util.queuehandling         | queue_report              | queue jobs had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,437 | INFO     | pilot.util.queuehandling         | queue_report              | queue payloads had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue data_in had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue data_out had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue current_data_in had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue validated_jobs had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue validated_payloads had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue monitored_payloads had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_jobs had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_payloads had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_data_in had 1 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,438 | INFO     | pilot.util.queuehandling         | queue_report              | queue finished_data_out had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_jobs had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_payloads had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_data_in had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue failed_data_out had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue completed_jobs had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue completed_jobids has 1 job(s)
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue realtimelog_payloads had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.queuehandling         | queue_report              | queue messages had 0 job(s) [purged]
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.control.job                | has_job_completed         | job 5777374300 has completed (purged errors)
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | DEBUG    | pilot.util.realtimelogger        | cleanup                   | attempting real-time logger cleanup
[2023-03-08 17:19:04] 2023-03-08 16:18:14,439 | INFO     | pilot.util.processes             | cleanup                   | overall cleanup function is called
[2023-03-08 17:19:04] 2023-03-08 16:18:14,442 | DEBUG    | pilot.util.processes             | cleanup                   | work directory was removed: /var/lib/boinc/slots/0/PanDA_Pilot-5777374300
[2023-03-08 17:19:04] 2023-03-08 16:18:15,446 | INFO     | pilot.info.jobdata               | collect_zombies           | --- collectZombieJob: --- 10, [172511]
[2023-03-08 17:19:04] 2023-03-08 16:18:15,446 | INFO     | pilot.info.jobdata               | collect_zombies           | zombie collector trying to kill pid 172511
[2023-03-08 17:19:04] 2023-03-08 16:18:15,446 | INFO     | pilot.info.jobdata               | collect_zombies           | harmless exception when collecting zombies: [Errno 10] No child processes
[2023-03-08 17:19:04] 2023-03-08 16:18:16,451 | INFO     | pilot.util.processes             | cleanup                   | collected zombie processes
[2023-03-08 17:19:04] 2023-03-08 16:18:16,452 | INFO     | pilot.util.processes             | cleanup                   | will now attempt to kill all subprocesses of pid=172511
[2023-03-08 17:19:04] 2023-03-08 16:18:16,499 | INFO     | pilot.util.processes             | kill_processes            | process IDs to be killed: [172511] (in reverse order)
[2023-03-08 17:19:04] 2023-03-08 16:18:16,523 | WARNING  | pilot.util.processes             | kill_processes            | found no corresponding commands to process id(s)
[2023-03-08 17:19:04] 2023-03-08 16:18:16,523 | INFO     | pilot.util.processes             | kill_orphans              | Do not look for orphan processes in BOINC jobs
[2023-03-08 17:19:04] 2023-03-08 16:18:16,523 | DEBUG    | pilot.util.queuehandling         | purge_queue               | queue purged
[2023-03-08 17:19:04] 2023-03-08 16:18:16,523 | INFO     | pilot.control.job                | retrieve                  | ready for new job
[2023-03-08 17:19:04] 2023-03-08 16:18:16,523 | INFO     | root                             | retrieve                  | pilot has finished with previous job - re-establishing logging
[2023-03-08 17:19:04] 2023-03-08 16:18:16,524 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-03-08 17:19:04] 2023-03-08 16:18:16,524 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ***  PanDA Pilot version 3.5.1 (10)  ***
[2023-03-08 17:19:04] 2023-03-08 16:18:16,524 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-03-08 17:19:04] 2023-03-08 16:18:16,524 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | 
[2023-03-08 17:19:04] 2023-03-08 16:18:16,524 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | pilot is running in a VM
[2023-03-08 17:19:04] 2023-03-08 16:18:16,524 | INFO     | pilot.util.auxiliary             | display_architecture_info | architecture information:
[2023-03-08 17:19:04] 2023-03-08 16:18:16,581 | INFO     | pilot.util.auxiliary             | display_architecture_info | 
[2023-03-08 17:19:04] LSB Version:	:core-4.1-amd64:core-4.1-noarch
[2023-03-08 17:19:04] Distributor ID:	CentOS
[2023-03-08 17:19:04] Description:	CentOS Linux release 7.9.2009 (Core)
[2023-03-08 17:19:04] Release:	7.9.2009
[2023-03-08 17:19:04] Codename:	Core
[2023-03-08 17:19:04] 2023-03-08 16:18:16,581 | INFO     | pilot.util.auxiliary             | pilot_version_banner      | ****************************************
[2023-03-08 17:19:04] 2023-03-08 16:18:17,084 | DEBUG    | pilot.util.monitoring            | check_local_space         | checking local space on /var/lib/boinc/slots/0
[2023-03-08 17:19:04] 2023-03-08 16:18:17,084 | INFO     | pilot.util.container             | print_executable          | executing command: df -mP /var/lib/boinc/slots/0
[2023-03-08 17:19:04] 2023-03-08 16:18:17,096 | DEBUG    | pilot.util.workernode            | get_local_disk_space      | stdout=Filesystem          1048576-blocks  Used Available Capacity Mounted on
[2023-03-08 17:19:04] /dev/mapper/cl-root          45198 11315     33884      26% /var/lib/boinc/slots/0
[2023-03-08 17:19:04] 2023-03-08 16:18:17,097 | DEBUG    | pilot.util.workernode            | get_local_disk_space      | stderr=
[2023-03-08 17:19:04] 2023-03-08 16:18:17,097 | INFO     | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (35529949184 B)
[2023-03-08 17:19:04] 2023-03-08 16:18:17,097 | WARNING  | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
[2023-03-08 17:19:04] 2023-03-08 16:18:17,097 | DEBUG    | pilot.control.job                | retrieve                  | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:17,098 | INFO     | pilot.control.job                | retrieve                  | [job] retrieve thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:17,098 | WARNING  | pilot.control.monitor            | control                   | aborting monitor loop since graceful_stop has been set
[2023-03-08 17:19:04] 2023-03-08 16:18:17,098 | INFO     | pilot.control.monitor            | control                   | [monitor] control thread has ended
[2023-03-08 17:19:04] 2023-03-08 16:18:17,098 | WARNING  | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
[2023-03-08 17:19:04] 2023-03-08 16:18:17,123 | DEBUG    | pilot.control.payload            | validate_post             | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:17,123 | INFO     | pilot.control.payload            | validate_post             | [payload] validate_post thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:17,335 | DEBUG    | pilot.control.payload            | validate_pre              | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:17,335 | INFO     | pilot.control.payload            | validate_pre              | [payload] validate_pre thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:17,616 | WARNING  | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
[2023-03-08 17:19:04] 2023-03-08 16:18:17,740 | DEBUG    | pilot.control.payload            | execute_payloads          | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:17,740 | INFO     | pilot.control.payload            | execute_payloads          | [payload] execute_payloads thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:17,771 | DEBUG    | pilot.control.data               | copytool_in               | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:17,771 | INFO     | pilot.control.data               | copytool_in               | [data] copytool_in thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:17,836 | DEBUG    | pilot.control.data               | control                   | data control ending since graceful_stop has been set
[2023-03-08 17:19:04] 2023-03-08 16:18:17,836 | DEBUG    | pilot.control.data               | control                   | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:17,836 | INFO     | pilot.control.data               | control                   | [data] control thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:18,018 | DEBUG    | pilot.control.job                | validate                  | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:18,018 | INFO     | pilot.control.job                | validate                  | [job] validate thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:18,099 | DEBUG    | pilot.control.data               | copytool_out              | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:18,099 | INFO     | pilot.control.data               | copytool_out              | [data] copytool_out thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:18,118 | DEBUG    | pilot.control.payload            | failed_post               | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:18,118 | INFO     | pilot.control.payload            | failed_post               | [payload] failed_post thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:18,128 | DEBUG    | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
[2023-03-08 17:19:04] 2023-03-08 16:18:18,128 | DEBUG    | pilot.control.payload            | control                   | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:18,128 | INFO     | pilot.control.payload            | control                   | [payload] control thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:18,336 | DEBUG    | pilot.control.job                | control                   | job control ending since graceful_stop has been set
[2023-03-08 17:19:04] 2023-03-08 16:18:18,336 | DEBUG    | pilot.control.job                | control                   | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:18,336 | INFO     | pilot.control.job                | control                   | [job] control thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:18,400 | DEBUG    | pilot.control.job                | create_data_payload       | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:18,400 | INFO     | pilot.control.job                | create_data_payload       | [job] create_data_payload thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:19,428 | WARNING  | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
[2023-03-08 17:19:04] 2023-03-08 16:18:19,428 | DEBUG    | pilot.control.job                | queue_monitor             | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:19,428 | INFO     | pilot.control.job                | queue_monitor             | [job] queue monitor thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:20,618 | DEBUG    | pilot.control.data               | queue_monitoring          | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:20,618 | INFO     | pilot.control.data               | queue_monitoring          | [data] queue_monitor thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:18:27,566 | INFO     | pilot.control.payload            | get_logging_info          | job.realtimelogging is not enabled
[2023-03-08 17:19:04] 2023-03-08 16:18:27,566 | DEBUG    | pilot.control.payload            | run_realtimelog           | real-time logging not needed at this point
[2023-03-08 17:19:04] 2023-03-08 16:18:27,566 | DEBUG    | pilot.control.payload            | run_realtimelog           | realtime logger was not found, waiting ..
[2023-03-08 17:19:04] 2023-03-08 16:18:27,566 | DEBUG    | pilot.control.payload            | run_realtimelog           | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:18:27,566 | INFO     | pilot.control.payload            | run_realtimelog           | [payload] run_realtimelog thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:19:04,112 | WARNING  | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 73 s)
[2023-03-08 17:19:04] 2023-03-08 16:19:04,112 | DEBUG    | pilot.control.job                | job_monitor               | will not set job_aborted yet
[2023-03-08 17:19:04] 2023-03-08 16:19:04,112 | INFO     | pilot.control.job                | job_monitor               | [job] job monitor thread has finished
[2023-03-08 17:19:04] 2023-03-08 16:19:04,790 | DEBUG    | pilot.util.processes             | threads_aborted           | aborting since only the main Pilot thread is still running (total thread count=1 with 0 daemon threa
[2023-03-08 17:19:04] 2023-03-08 16:19:04,790 | DEBUG    | pilot.workflow.generic           | run                       | all relevant threads have aborted (thread count=1)
[2023-03-08 17:19:04] 2023-03-08 16:19:04,790 | INFO     | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
[2023-03-08 17:19:04] 2023-03-08 16:19:04,790 | INFO     | root                             | wrap_up                   | traces error code: 0
[2023-03-08 17:19:04] 2023-03-08 16:19:04,790 | INFO     | root                             | wrap_up                   | pilot has finished
[2023-03-08 17:19:04] 2023-03-08 16:19:04,846 [wrapper] ==== pilot stdout END ====
[2023-03-08 17:19:04] 2023-03-08 16:19:04,848 [wrapper] ==== wrapper stdout RESUME ====
[2023-03-08 17:19:04] 2023-03-08 16:19:04,851 [wrapper] pilotpid: 169450
[2023-03-08 17:19:04] 2023-03-08 16:19:04,853 [wrapper] Pilot exit status: 0
[2023-03-08 17:19:04] 2023-03-08 16:19:04,865 [wrapper] pandaids: 5777374300
[2023-03-08 17:19:04] 2023-03-08 16:19:04,869 [wrapper] apfmon messages muted
[2023-03-08 17:19:04] 2023-03-08 16:19:04,872 [wrapper] Test setup, not cleaning
[2023-03-08 17:19:04] 2023-03-08 16:19:04,874 [wrapper] ==== wrapper stdout END ====
[2023-03-08 17:19:04] 2023-03-08 16:19:04,876 [wrapper] ==== wrapper stderr END ====
[2023-03-08 17:19:04] 2023-03-08 16:19:04,880 [wrapper] wrapperexiting ec=0, duration=780
[2023-03-08 17:19:04] 2023-03-08 16:19:04,882 [wrapper] apfmon messages muted
[2023-03-08 17:19:04]  *** Error codes and diagnostics ***
[2023-03-08 17:19:04]     "exeErrorCode": 0,
[2023-03-08 17:19:04]     "exeErrorDiag": "",
[2023-03-08 17:19:04]     "pilotErrorCode": 0,
[2023-03-08 17:19:04]     "pilotErrorDiag": "",
[2023-03-08 17:19:04]  *** Listing of results directory ***
[2023-03-08 17:19:04] insgesamt 43896
[2023-03-08 17:19:04] -rwx------. 1 boinc boinc    26445  8. M&#195;&#164;r 16:57 runpilot2-wrapper.sh
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     4239  8. M&#195;&#164;r 16:57 queuedata.json
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   397721  8. M&#195;&#164;r 16:57 pilot3.tar.gz
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      107  8. M&#195;&#164;r 17:04 wrapper_26015_x86_64-pc-linux-gnu
[2023-03-08 17:19:04] -rwxr-xr-x. 1 boinc boinc     8343  8. M&#195;&#164;r 17:04 run_atlas
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      112  8. M&#195;&#164;r 17:04 job.xml
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc 37727106  8. M&#195;&#164;r 17:04 EVNT.04972714._000037.pool.root.1
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc    17098  8. M&#195;&#164;r 17:04 start_atlas.sh
[2023-03-08 17:19:04] drwxrwx--x. 2 boinc boinc       68  8. M&#195;&#164;r 17:04 shared
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc   408376  8. M&#195;&#164;r 17:04 input.tar.gz
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     6139  8. M&#195;&#164;r 17:04 init_data.xml
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc        0  8. M&#195;&#164;r 17:04 boinc_lockfile
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     2663  8. M&#195;&#164;r 17:06 pandaJob.out
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc      449  8. M&#195;&#164;r 17:06 setup.sh.local
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   955971  8. M&#195;&#164;r 17:07 agis_schedconf.cvmfs.json
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc  1705676  8. M&#195;&#164;r 17:07 agis_ddmendpoints.agis.ALL.json
[2023-03-08 17:19:04] drwx------. 4 boinc boinc     4096  8. M&#195;&#164;r 17:07 pilot3
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc  1376701  8. M&#195;&#164;r 17:18 output.1.1b53af08-c3c6-4305-96c4-080cd7251084_15484.pool.root
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc     1011  8. M&#195;&#164;r 17:18 memory_monitor_summary.json
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   162143  8. M&#195;&#164;r 17:18 1b53af08-c3c6-4305-96c4-080cd7251084_15484.1.job.log.tgz
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc     7713  8. M&#195;&#164;r 17:18 heartbeat.json
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      532  8. M&#195;&#164;r 17:18 boinc_task_state.xml
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc     8192  8. M&#195;&#164;r 17:18 boinc_mmap_file
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc       24  8. M&#195;&#164;r 17:18 wrapper_checkpoint.txt
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc     9042  8. M&#195;&#164;r 17:19 pilotlog.txt
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc   219925  8. M&#195;&#164;r 17:19 1b53af08-c3c6-4305-96c4-080cd7251084_15484.1.job.log
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc      464  8. M&#195;&#164;r 17:19 output.list
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc      748  8. M&#195;&#164;r 17:19 runtime_log
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc  1781760  8. M&#195;&#164;r 17:19 result.tar.gz
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc    11124  8. M&#195;&#164;r 17:19 runtime_log.err
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc      623  8. M&#195;&#164;r 17:19 e5uMDmKLBu2n7Olcko1bjSoqABFKDmABFKDm7AsVDmjrFKDmlD4XGm.diag
[2023-03-08 17:19:04] -rw-r--r--. 1 boinc boinc    30276  8. M&#195;&#164;r 17:19 stderr.txt
[2023-03-08 17:19:04] HITS file was successfully produced:
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc 1376701  8. M&#195;&#164;r 17:18 shared/HITS.pool.root.1
[2023-03-08 17:19:04]  *** Contents of shared directory: ***
[2023-03-08 17:19:04] insgesamt 40352
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc 37727106  8. M&#195;&#164;r 17:04 ATLAS.root_0
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc    17098  8. M&#195;&#164;r 17:04 start_atlas.sh
[2023-03-08 17:19:04] -rw-r--r--. 2 boinc boinc   408376  8. M&#195;&#164;r 17:04 input.tar.gz
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc  1376701  8. M&#195;&#164;r 17:18 HITS.pool.root.1
[2023-03-08 17:19:04] -rw-------. 1 boinc boinc  1781760  8. M&#195;&#164;r 17:19 result.tar.gz
17:19:05 (163788): run_atlas exited; CPU time 548.102899
17:19:05 (163788): called boinc_finish(0)

</stderr_txt>
]]>


©2024 CERN