Name | ywHNDmKEVv2n7Olcko1bjSoqABFKDmABFKDm7AsVDm7CGKDmKWCNem_0 |
Workunit | 2286278 |
Created | 12 Mar 2023, 7:23:31 UTC |
Sent | 12 Mar 2023, 7:24:30 UTC |
Report deadline | 19 Mar 2023, 7:24:30 UTC |
Received | 12 Mar 2023, 7:53:25 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 4351 |
Run time | 20 min 43 sec |
CPU time | 15 min 52 sec |
Validate state | Valid |
Credit | 14.20 |
Device peak FLOPS | 2.95 GFLOPS |
Application version | ATLAS Simulation v3.00 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.58 GB |
Peak swap size | 2.14 GB |
Peak disk usage | 79.98 MB |
<core_client_version>7.20.2</core_client_version> <![CDATA[ <stderr_txt> 08:32:29 (133065): wrapper (7.7.26015): starting 08:32:29 (133065): wrapper: running run_atlas (--nthreads 1) [2023-03-12 08:32:29] Arguments: --nthreads 1 [2023-03-12 08:32:29] Threads: 1 [2023-03-12 08:32:29] Checking for CVMFS [2023-03-12 08:32:29] Probing /cvmfs/atlas.cern.ch... OK [2023-03-12 08:32:30] Probing /cvmfs/atlas-condb.cern.ch... OK [2023-03-12 08:32:30] Running cvmfs_config stat atlas.cern.ch [2023-03-12 08:32:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2023-03-12 08:32:30] 2.10.1.0 77593 62 47524 116643 3 109 2727766 4096001 0 130560 0 202829 99.998 2698 25 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.161.84:3126 1 [2023-03-12 08:32:30] CVMFS is ok [2023-03-12 08:32:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2023-03-12 08:32:30] Checking for apptainer binary... [2023-03-12 08:32:30] Using apptainer found in PATH at /usr/bin/apptainer [2023-03-12 08:32:30] Running /usr/bin/apptainer --version [2023-03-12 08:32:30] apptainer version 1.1.6-1.el8 [2023-03-12 08:32:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2023-03-12 08:32:30] fx8s [2023-03-12 08:32:30] apptainer works [2023-03-12 08:33:20] Starting ATLAS job with PandaID=5781002440 [2023-03-12 08:33:20] Try creating a directory in /tmp [2023-03-12 08:33:20] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 mktemp /tmp/tmp.XXXXX [2023-03-12 08:33:20] /usr/bin/mktemp: failed to create file via template '/tmp/tmp.XXXXX': Read-only file system [2023-03-12 08:33:20] mktemp /tmp failed [2023-03-12 08:33:20] Try creating a directory in /var/tmp [2023-03-12 08:33:20] /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 mktemp /var/tmp/tmp.XXXXX [2023-03-12 08:33:20] /usr/bin/mktemp: failed to create file via template '/var/tmp/tmp.XXXXX': Read-only file system [2023-03-12 08:33:20] mktemp /var/tmp failed [2023-03-12 08:33:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2023-03-12 08:53:10] *** The last 200 lines of the pilot log: *** [2023-03-12 08:53:10] L1i cache: 64K [2023-03-12 08:53:10] L2 cache: 2048K [2023-03-12 08:53:10] L3 cache: 8192K [2023-03-12 08:53:10] NUMA node0 CPU(s): 0 [2023-03-12 08:53:10] Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt rdtscp lm constant_tsc rep_good nopl nonstop_tsc [2023-03-12 08:53:10] 2023-03-12 07:52:14,085 | INFO | pilot.util.workernode | get_cpu_cores | found 1 cores (1 cores per socket, 1 sockets) [2023-03-12 08:53:10] 2023-03-12 07:52:14,085 | DEBUG | pilot.util.workernode | get_cpu_cores | current model string: AMD FX-8370E Eight-Core Processor 2048 KB [2023-03-12 08:53:10] 2023-03-12 07:52:14,085 | INFO | pilot.util.container | print_executable | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo [2023-03-12 08:53:10] 2023-03-12 07:52:14,109 | INFO | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc/slots/0/PanDA_Pilot-5781002440/memory_monitor_summary.json (trf name=prmo [2023-03-12 08:53:10] 2023-03-12 07:52:14,110 | DEBUG | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Avg': {'nprocs': 4.777, 'nthreads': 5.666, 'pss': 1514127.0, 'rchar': 57446969. [2023-03-12 08:53:10] 2023-03-12 07:52:14,110 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.util.timing | timing_report | .............................. [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.util.timing | timing_report | . Timing measurements: [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.util.timing | timing_report | . get job = 0 s [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.util.timing | timing_report | . initial setup = 3 s [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.util.timing | timing_report | . payload setup = 7 s [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.util.timing | timing_report | . stage-in = 0 s [2023-03-12 08:53:10] 2023-03-12 07:52:14,111 | INFO | pilot.util.timing | timing_report | . payload execution = 1069 s [2023-03-12 08:53:10] 2023-03-12 07:52:14,112 | INFO | pilot.util.timing | timing_report | . stage-out = 0 s [2023-03-12 08:53:10] 2023-03-12 07:52:14,112 | INFO | pilot.util.timing | timing_report | .............................. [2023-03-12 08:53:10] 2023-03-12 07:52:14,112 | DEBUG | pilot.control.job | send_state | data={'jobId': '5781002440', 'state': 'finished', 'timestamp': '2023-03-12T08:52:14+01:00', 'siteNam [2023-03-12 08:53:10] 2023-03-12 07:52:14,113 | DEBUG | pilot.control.job | write_heartbeat_to_file | heartbeat dictionary: {'jobId': '5781002440', 'state': 'finished', 'timestamp': '2023-03-12T08:52:14 [2023-03-12 08:53:10] 2023-03-12 07:52:14,113 | DEBUG | pilot.control.job | write_heartbeat_to_file | wrote heartbeat to file: /var/lib/boinc/slots/0/heartbeat.json [2023-03-12 08:53:10] 2023-03-12 07:52:14,244 | INFO | pilot.control.job | make_job_report | [2023-03-12 08:53:10] 2023-03-12 07:52:14,244 | INFO | pilot.control.job | make_job_report | job summary report [2023-03-12 08:53:10] 2023-03-12 07:52:14,244 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-03-12 08:53:10] 2023-03-12 07:52:14,244 | INFO | pilot.control.job | make_job_report | PanDA job id: 5781002440 [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | task id: NULL [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | errors: (none) [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | status: LOG_TRANSFER = DONE [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | pilot state: finished [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | transexitcode: 0 [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | exeerrorcode: 0 [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | exeerrordiag: [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | exitcode: 0 [2023-03-12 08:53:10] 2023-03-12 07:52:14,245 | INFO | pilot.control.job | make_job_report | exitmsg: OK [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | cpuconsumptiontime: 960 s [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | nevents: 2 [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | neventsw: 0 [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | pid: 141434 [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | pgrp: 141434 [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | corecount: 1 [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | event service: False [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | sizes: {0: 2522313, 1: 2537328, 1080: 2558955, 1081: 2568005, 1083: 2568061, 1084: 2568283} [2023-03-12 08:53:10] 2023-03-12 07:52:14,246 | INFO | pilot.control.job | make_job_report | -------------------------------------------------- [2023-03-12 08:53:10] 2023-03-12 07:52:14,247 | INFO | pilot.control.job | make_job_report | [2023-03-12 08:53:10] 2023-03-12 07:52:14,247 | DEBUG | pilot.control.job | has_job_completed | ls -lF /var/lib/boinc/slots/0: [2023-03-12 08:53:10] [2023-03-12 08:53:10] 2023-03-12 07:52:14,247 | INFO | pilot.util.container | print_executable | executing command: ls -lF /var/lib/boinc/slots/0 [2023-03-12 08:53:10] 2023-03-12 07:52:14,265 | DEBUG | pilot.control.job | has_job_completed | total 43108 [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 244483 Mar 12 08:52 0cba0349-2408-4afa-8b8b-f23c1d726e83_44306.1.job.log [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 164772 Mar 12 08:52 0cba0349-2408-4afa-8b8b-f23c1d726e83_44306.1.job.log.tgz [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 38184411 Mar 12 08:32 EVNT.04972714._000028.pool.root.1 [2023-03-12 08:53:10] drwxrwx---. 2 boinc boinc 4096 Mar 12 08:52 PanDA_Pilot-5781002440/ [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1704527 Mar 12 08:34 agis_ddmendpoints.agis.ALL.json [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 969645 Mar 12 08:34 agis_schedconf.cvmfs.json [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 0 Mar 12 08:32 boinc_lockfile [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 8192 Mar 12 08:51 boinc_mmap_file [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 533 Mar 12 08:52 boinc_task_state.xml [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 7306 Mar 12 08:52 heartbeat.json [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 6140 Mar 12 08:32 init_data.xml [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 406257 Mar 12 08:32 input.tar.gz [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 112 Mar 12 08:32 job.xml [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1011 Mar 12 08:52 memory_monitor_summary.json [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1490898 Mar 12 08:51 output.1.0cba0349-2408-4afa-8b8b-f23c1d726e83_44306.pool.root [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 464 Mar 12 08:52 output.list [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 2664 Mar 12 08:33 pandaJob.out [2023-03-12 08:53:10] drwx------. 4 boinc boinc 4096 Mar 12 08:34 pilot3/ [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 395887 Mar 12 08:23 pilot3.tar.gz [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 224676 Mar 12 08:52 pilotlog.txt [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 4239 Mar 12 08:23 queuedata.json [2023-03-12 08:53:10] -rwxr-xr-x. 1 boinc boinc 8343 Mar 12 08:32 run_atlas* [2023-03-12 08:53:10] -rwx------. 1 boinc boinc 26445 Mar 12 08:23 runpilot2-wrapper.sh* [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 407 Mar 12 08:33 runtime_log [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 7026 Mar 12 08:33 runtime_log.err [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 449 Mar 12 08:33 setup.sh.local [2023-03-12 08:53:10] drwxrwx--x. 2 boinc boinc 68 Mar 12 08:32 shared/ [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 17098 Mar 12 08:32 start_atlas.sh [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 2415 Mar 12 08:33 stderr.txt [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 107 Mar 12 08:32 wrapper_26015_x86_64-pc-linux-gnu [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 25 Mar 12 08:51 wrapper_checkpoint.txt [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 127 Mar 12 08:33 ywHNDmKEVv2n7Olcko1bjSoqABFKDmABFKDm7AsVDm7CGKDmKWCNem.diag [2023-03-12 08:53:10] 2023-03-12 07:52:14,266 | INFO | pilot.util.queuehandling | queue_report | queue jobs had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,266 | INFO | pilot.util.queuehandling | queue_report | queue payloads had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,266 | INFO | pilot.util.queuehandling | queue_report | queue data_in had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,266 | INFO | pilot.util.queuehandling | queue_report | queue data_out had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,266 | INFO | pilot.util.queuehandling | queue_report | queue current_data_in had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue validated_jobs had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue validated_payloads had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue monitored_payloads had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue finished_jobs had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue finished_payloads had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_in had 1 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue finished_data_out had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,267 | INFO | pilot.util.queuehandling | queue_report | queue failed_jobs had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.util.queuehandling | queue_report | queue failed_payloads had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_in had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.util.queuehandling | queue_report | queue failed_data_out had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobs had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.util.queuehandling | queue_report | queue completed_jobids has 1 job(s) [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.util.queuehandling | queue_report | queue realtimelog_payloads had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.util.queuehandling | queue_report | queue messages had 0 job(s) [purged] [2023-03-12 08:53:10] 2023-03-12 07:52:14,268 | INFO | pilot.control.job | has_job_completed | job 5781002440 has completed (purged errors) [2023-03-12 08:53:10] 2023-03-12 07:52:14,269 | DEBUG | pilot.util.realtimelogger | cleanup | attempting real-time logger cleanup [2023-03-12 08:53:10] 2023-03-12 07:52:14,269 | INFO | pilot.util.processes | cleanup | overall cleanup function is called [2023-03-12 08:53:10] 2023-03-12 07:52:14,271 | DEBUG | pilot.util.processes | cleanup | work directory was removed: /var/lib/boinc/slots/0/PanDA_Pilot-5781002440 [2023-03-12 08:53:10] 2023-03-12 07:52:15,276 | INFO | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [141434] [2023-03-12 08:53:10] 2023-03-12 07:52:15,276 | INFO | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 141434 [2023-03-12 08:53:10] 2023-03-12 07:52:15,276 | INFO | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes [2023-03-12 08:53:10] 2023-03-12 07:52:16,281 | INFO | pilot.util.processes | cleanup | collected zombie processes [2023-03-12 08:53:10] 2023-03-12 07:52:16,282 | INFO | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=141434 [2023-03-12 08:53:10] 2023-03-12 07:52:16,347 | INFO | pilot.util.processes | kill_processes | process IDs to be killed: [141434] (in reverse order) [2023-03-12 08:53:10] 2023-03-12 07:52:16,376 | WARNING | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) [2023-03-12 08:53:10] 2023-03-12 07:52:16,377 | INFO | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs [2023-03-12 08:53:10] 2023-03-12 07:52:16,377 | DEBUG | pilot.util.queuehandling | purge_queue | queue purged [2023-03-12 08:53:10] 2023-03-12 07:52:16,377 | INFO | pilot.control.job | retrieve | ready for new job [2023-03-12 08:53:10] 2023-03-12 07:52:16,377 | INFO | root | retrieve | pilot has finished with previous job - re-establishing logging [2023-03-12 08:53:10] 2023-03-12 07:52:16,378 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-03-12 08:53:10] 2023-03-12 07:52:16,378 | INFO | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 3.5.1 (14) *** [2023-03-12 08:53:10] 2023-03-12 07:52:16,378 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-03-12 08:53:10] 2023-03-12 07:52:16,378 | INFO | pilot.util.auxiliary | pilot_version_banner | [2023-03-12 08:53:10] 2023-03-12 07:52:16,379 | INFO | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM [2023-03-12 08:53:10] 2023-03-12 07:52:16,379 | INFO | pilot.util.auxiliary | display_architecture_info | architecture information: [2023-03-12 08:53:10] 2023-03-12 07:52:16,437 | INFO | pilot.util.auxiliary | display_architecture_info | [2023-03-12 08:53:10] LSB Version: :core-4.1-amd64:core-4.1-noarch [2023-03-12 08:53:10] Distributor ID: CentOS [2023-03-12 08:53:10] Description: CentOS Linux release 7.9.2009 (Core) [2023-03-12 08:53:10] Release: 7.9.2009 [2023-03-12 08:53:10] Codename: Core [2023-03-12 08:53:10] 2023-03-12 07:52:16,437 | INFO | pilot.util.auxiliary | pilot_version_banner | **************************************** [2023-03-12 08:53:10] 2023-03-12 07:52:16,684 | INFO | pilot.util.features | __init__ | collecting machine features [2023-03-12 08:53:10] 2023-03-12 07:52:16,684 | INFO | pilot.util.features | set | machine features path does not exist (path="") [2023-03-12 08:53:10] 2023-03-12 07:52:16,684 | DEBUG | pilot.control.monitor | run_shutdowntime_minute_check | failed to convert shutdowntime: invalid literal for int() with base 10: '' [2023-03-12 08:53:10] 2023-03-12 07:52:16,941 | DEBUG | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc/slots/0 [2023-03-12 08:53:10] 2023-03-12 07:52:16,941 | INFO | pilot.util.container | print_executable | executing command: df -mP /var/lib/boinc/slots/0 [2023-03-12 08:53:10] 2023-03-12 07:52:16,957 | DEBUG | pilot.util.workernode | get_local_disk_space | stdout=Filesystem 1048576-blocks Used Available Capacity Mounted on [2023-03-12 08:53:10] /dev/mapper/cl-root 45198 11653 33546 26% /var/lib/boinc/slots/0 [2023-03-12 08:53:10] 2023-03-12 07:52:16,958 | DEBUG | pilot.util.workernode | get_local_disk_space | stderr= [2023-03-12 08:53:10] 2023-03-12 07:52:16,958 | INFO | pilot.util.monitoring | check_local_space | sufficient remaining disk space (35175530496 B) [2023-03-12 08:53:10] 2023-03-12 07:52:16,958 | WARNING | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job [2023-03-12 08:53:10] 2023-03-12 07:52:16,959 | DEBUG | pilot.control.job | retrieve | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:16,959 | INFO | pilot.control.job | retrieve | [job] retrieve thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:16,965 | DEBUG | pilot.control.data | control | data control ending since graceful_stop has been set [2023-03-12 08:53:10] 2023-03-12 07:52:16,965 | DEBUG | pilot.control.data | control | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:16,965 | INFO | pilot.control.data | control | [data] control thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:17,263 | WARNING | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration [2023-03-12 08:53:10] 2023-03-12 07:52:17,418 | DEBUG | pilot.control.payload | validate_post | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:17,418 | INFO | pilot.control.payload | validate_post | [payload] validate_post thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:17,429 | DEBUG | pilot.control.payload | validate_pre | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:17,429 | INFO | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:17,429 | DEBUG | pilot.control.data | copytool_in | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:17,429 | INFO | pilot.control.data | copytool_in | [data] copytool_in thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:17,460 | DEBUG | pilot.control.payload | control | payload control ending since graceful_stop has been set [2023-03-12 08:53:10] 2023-03-12 07:52:17,460 | DEBUG | pilot.control.payload | control | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:17,460 | INFO | pilot.control.payload | control | [payload] control thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:17,691 | INFO | pilot.control.monitor | control | [monitor] control thread has ended [2023-03-12 08:53:10] 2023-03-12 07:52:17,817 | DEBUG | pilot.control.payload | execute_payloads | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:17,817 | INFO | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:17,859 | DEBUG | pilot.control.job | control | job control ending since graceful_stop has been set [2023-03-12 08:53:10] 2023-03-12 07:52:17,860 | DEBUG | pilot.control.job | control | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:17,860 | INFO | pilot.control.job | control | [job] control thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:18,264 | DEBUG | pilot.control.data | copytool_out | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:18,264 | INFO | pilot.control.data | copytool_out | [data] copytool_out thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:18,282 | DEBUG | pilot.control.job | validate | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:18,283 | INFO | pilot.control.job | validate | [job] validate thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:18,283 | DEBUG | pilot.control.job | create_data_payload | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:18,283 | INFO | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:18,319 | DEBUG | pilot.control.payload | failed_post | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:18,320 | INFO | pilot.control.payload | failed_post | [payload] failed_post thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:19,255 | WARNING | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration [2023-03-12 08:53:10] 2023-03-12 07:52:19,255 | DEBUG | pilot.control.job | queue_monitor | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:19,255 | INFO | pilot.control.job | queue_monitor | [job] queue monitor thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:19,277 | WARNING | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration [2023-03-12 08:53:10] 2023-03-12 07:52:22,279 | DEBUG | pilot.control.data | queue_monitoring | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:22,279 | INFO | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished [2023-03-12 08:53:10] 2023-03-12 07:52:27,654 | INFO | pilot.control.payload | get_logging_info | job.realtimelogging is not enabled [2023-03-12 08:53:10] 2023-03-12 07:52:27,654 | DEBUG | pilot.control.payload | run_realtimelog | real-time logging not needed at this point [2023-03-12 08:53:10] 2023-03-12 07:52:27,654 | DEBUG | pilot.control.payload | run_realtimelog | realtime logger was not found, waiting .. [2023-03-12 08:53:10] 2023-03-12 07:52:27,654 | DEBUG | pilot.control.payload | run_realtimelog | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:52:27,654 | INFO | pilot.control.payload | run_realtimelog | [payload] run_realtimelog thread has finished [2023-03-12 08:53:10] 2023-03-12 07:53:09,641 | WARNING | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) [2023-03-12 08:53:10] 2023-03-12 07:53:09,642 | DEBUG | pilot.control.job | job_monitor | will not set job_aborted yet [2023-03-12 08:53:10] 2023-03-12 07:53:09,642 | INFO | pilot.control.job | job_monitor | [job] job monitor thread has finished [2023-03-12 08:53:10] 2023-03-12 07:53:09,871 | DEBUG | pilot.util.processes | threads_aborted | aborting since only the main Pilot thread is still running (total thread count=1 with 0 daemon threa [2023-03-12 08:53:10] 2023-03-12 07:53:09,871 | DEBUG | pilot.workflow.generic | run | all relevant threads have aborted (thread count=1) [2023-03-12 08:53:10] 2023-03-12 07:53:09,871 | INFO | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) [2023-03-12 08:53:10] 2023-03-12 07:53:09,872 | INFO | root | wrap_up | traces error code: 0 [2023-03-12 08:53:10] 2023-03-12 07:53:09,872 | INFO | root | wrap_up | pilot has finished [2023-03-12 08:53:10] 2023-03-12 07:53:09,939 [wrapper] ==== pilot stdout END ==== [2023-03-12 08:53:10] 2023-03-12 07:53:09,942 [wrapper] ==== wrapper stdout RESUME ==== [2023-03-12 08:53:10] 2023-03-12 07:53:09,945 [wrapper] pilotpid: 138383 [2023-03-12 08:53:10] 2023-03-12 07:53:09,948 [wrapper] Pilot exit status: 0 [2023-03-12 08:53:10] 2023-03-12 07:53:09,966 [wrapper] pandaids: 5781002440 [2023-03-12 08:53:10] 2023-03-12 07:53:09,972 [wrapper] apfmon messages muted [2023-03-12 08:53:10] 2023-03-12 07:53:09,975 [wrapper] Test setup, not cleaning [2023-03-12 08:53:10] 2023-03-12 07:53:09,978 [wrapper] ==== wrapper stdout END ==== [2023-03-12 08:53:10] 2023-03-12 07:53:09,980 [wrapper] ==== wrapper stderr END ==== [2023-03-12 08:53:10] 2023-03-12 07:53:09,986 [wrapper] wrapperexiting ec=0, duration=1189 [2023-03-12 08:53:10] 2023-03-12 07:53:09,989 [wrapper] apfmon messages muted [2023-03-12 08:53:10] *** Error codes and diagnostics *** [2023-03-12 08:53:10] "exeErrorCode": 0, [2023-03-12 08:53:10] "exeErrorDiag": "", [2023-03-12 08:53:10] "pilotErrorCode": 0, [2023-03-12 08:53:10] "pilotErrorDiag": "", [2023-03-12 08:53:10] *** Listing of results directory *** [2023-03-12 08:53:10] insgesamt 44656 [2023-03-12 08:53:10] -rwx------. 1 boinc boinc 26445 12. Mär 08:23 runpilot2-wrapper.sh [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 4239 12. Mär 08:23 queuedata.json [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 395887 12. Mär 08:23 pilot3.tar.gz [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 107 12. Mär 08:32 wrapper_26015_x86_64-pc-linux-gnu [2023-03-12 08:53:10] -rwxr-xr-x. 1 boinc boinc 8343 12. Mär 08:32 run_atlas [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 112 12. Mär 08:32 job.xml [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 17098 12. Mär 08:32 start_atlas.sh [2023-03-12 08:53:10] drwxrwx--x. 2 boinc boinc 68 12. Mär 08:32 shared [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 406257 12. Mär 08:32 input.tar.gz [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 6140 12. Mär 08:32 init_data.xml [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 38184411 12. Mär 08:32 EVNT.04972714._000028.pool.root.1 [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 0 12. Mär 08:32 boinc_lockfile [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 2664 12. Mär 08:33 pandaJob.out [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 449 12. Mär 08:33 setup.sh.local [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 969645 12. Mär 08:34 agis_schedconf.cvmfs.json [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1704527 12. Mär 08:34 agis_ddmendpoints.agis.ALL.json [2023-03-12 08:53:10] drwx------. 4 boinc boinc 4096 12. Mär 08:34 pilot3 [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1490898 12. Mär 08:51 output.1.0cba0349-2408-4afa-8b8b-f23c1d726e83_44306.pool.root [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1011 12. Mär 08:52 memory_monitor_summary.json [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 164772 12. Mär 08:52 0cba0349-2408-4afa-8b8b-f23c1d726e83_44306.1.job.log.tgz [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 7306 12. Mär 08:52 heartbeat.json [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 533 12. Mär 08:52 boinc_task_state.xml [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 8192 12. Mär 08:52 boinc_mmap_file [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 25 12. Mär 08:52 wrapper_checkpoint.txt [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 9341 12. Mär 08:53 pilotlog.txt [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 261858 12. Mär 08:53 0cba0349-2408-4afa-8b8b-f23c1d726e83_44306.1.job.log [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 464 12. Mär 08:53 output.list [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 748 12. Mär 08:53 runtime_log [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1935360 12. Mär 08:53 result.tar.gz [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 624 12. Mär 08:53 ywHNDmKEVv2n7Olcko1bjSoqABFKDmABFKDm7AsVDm7CGKDmKWCNem.diag [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 11125 12. Mär 08:53 runtime_log.err [2023-03-12 08:53:10] -rw-r--r--. 1 boinc boinc 30791 12. Mär 08:53 stderr.txt [2023-03-12 08:53:10] HITS file was successfully produced: [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1490898 12. Mär 08:51 shared/HITS.pool.root.1 [2023-03-12 08:53:10] *** Contents of shared directory: *** [2023-03-12 08:53:10] insgesamt 41060 [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 17098 12. Mär 08:32 start_atlas.sh [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 406257 12. Mär 08:32 input.tar.gz [2023-03-12 08:53:10] -rw-r--r--. 2 boinc boinc 38184411 12. Mär 08:32 ATLAS.root_0 [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1490898 12. Mär 08:51 HITS.pool.root.1 [2023-03-12 08:53:10] -rw-------. 1 boinc boinc 1935360 12. Mär 08:53 result.tar.gz 08:53:11 (133065): run_atlas exited; CPU time 952.391834 08:53:11 (133065): called boinc_finish(0) </stderr_txt> ]]>
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