Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-14 16:55:30 (21468): Detected: vboxwrapper 26206
2023-03-14 16:55:30 (21468): Detected: BOINC client v7.20.2
2023-03-14 16:55:31 (21468): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2023-03-14 16:55:31 (21468): Successfully copied 'init_data.xml' to the shared directory.
2023-03-14 16:55:31 (21468): Create VM. (boinc_46557863108e7837, slot#1)
2023-03-14 16:55:32 (21468): Setting Memory Size for VM. (7500MB)
2023-03-14 16:55:32 (21468): Setting CPU Count for VM. (5)
2023-03-14 16:55:32 (21468): Setting Chipset Options for VM.
2023-03-14 16:55:33 (21468): Setting Graphics Controller Options for VM.
2023-03-14 16:55:33 (21468): Setting Boot Options for VM.
2023-03-14 16:55:33 (21468): Setting Network Configuration for NAT.
2023-03-14 16:55:33 (21468): Enabling VM Network Access.
2023-03-14 16:55:34 (21468): Disabling USB Support for VM.
2023-03-14 16:55:34 (21468): Disabling COM Port Support for VM.
2023-03-14 16:55:34 (21468): Disabling LPT Port Support for VM.
2023-03-14 16:55:34 (21468): Disabling Audio Support for VM.
2023-03-14 16:55:35 (21468): Disabling Clipboard Support for VM.
2023-03-14 16:55:35 (21468): Disabling Drag and Drop Support for VM.
2023-03-14 16:55:35 (21468): Adding storage controller(s) to VM.
2023-03-14 16:55:35 (21468): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-14 16:55:36 (21468): Adding VirtualBox Guest Additions to VM.
2023-03-14 16:55:36 (21468): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-14 16:55:37 (21468): forwarding host port 58807 to guest port 80
2023-03-14 16:55:37 (21468): Enabling remote desktop for VM.
2023-03-14 16:55:37 (21468): Enabling shared directory for VM.
2023-03-14 16:55:38 (21468): Starting VM using VBoxManage interface. (boinc_46557863108e7837, slot#1)
2023-03-14 16:55:45 (21468): Successfully started VM. (PID = '15312')
2023-03-14 16:55:45 (21468): Reporting VM Process ID to BOINC.
2023-03-14 16:55:45 (21468): Guest Log: BIOS: VirtualBox 6.1.40
2023-03-14 16:55:45 (21468): Guest Log: CPUID EDX: 0x178bfbff
2023-03-14 16:55:45 (21468): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-14 16:55:45 (21468): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-14 16:55:45 (21468): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-14 16:55:45 (21468): Detected: Web Application Enabled (http://localhost:58807)
2023-03-14 16:55:45 (21468): Detected: Remote Desktop Enabled (localhost:58808)
2023-03-14 16:55:45 (21468): Preference change detected
2023-03-14 16:55:45 (21468): Setting CPU throttle for VM. (100%)
2023-03-14 16:55:45 (21468): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-14 16:55:47 (21468): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-14 16:55:47 (21468): Guest Log: BIOS: Booting from Hard Disk...
2023-03-14 16:55:50 (21468): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-14 16:55:50 (21468): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-14 16:55:50 (21468): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-14 16:56:00 (21468): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-14 16:56:00 (21468): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-14 16:56:15 (21468): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.000222 main     Log opened 2023-03-14T16:56:12.972357000Z
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.000329 main     OS Product: Linux
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.000369 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.000400 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.000432 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.000433 main     Process ID: 1410
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.000433 main     Package type: LINUX_64BITS_GENERIC
2023-03-14 16:56:15 (21468): Guest Log: 00:00:00.001408 main     5.2.32 r132073 started. Verbose level = 0
2023-03-14 16:56:15 (21468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-14 16:56:15 (21468): Guest Log: [INFO] Mounting shared directory
2023-03-14 16:56:15 (21468): Guest Log: [INFO] Checking for init_data.xml
2023-03-14 16:56:21 (21468): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-14 16:56:21 (21468): Guest Log: [INFO] Detected branch: dev
2023-03-14 16:56:21 (21468): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-14 16:56:21 (21468): Guest Log: Copying input files
2023-03-14 16:56:25 (21468): Guest Log: 00:00:10.005653 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 313 921 000ns (GuestNow=1 678 809 384 661 912 000 ns GuestLast=1 678 812 972 975 833 000 ns fSetTimeLastLoop=true )
2023-03-14 16:56:25 (21468): Guest Log: Copied input files into RunAtlas.
2023-03-14 16:56:25 (21468): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2023-03-14 16:56:39 (21468): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-14 16:56:39 (21468): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-14 16:56:39 (21468): Guest Log: 2.6.3.0 1691 0 29448 116736 4 1 3116421 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2023-03-14 16:56:42 (21468): Guest Log: copied the webapp to /var/www
2023-03-14 16:56:42 (21468): Guest Log: ATHENA_PROC_NUMBER=5
2023-03-14 16:56:42 (21468): Guest Log: ATHENA_CORE_NUMBER=5
2023-03-14 16:56:42 (21468): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-14 16:56:42 (21468): Guest Log:  *** Starting ATLAS job. (PandaID=5753961892 taskID=32413688) ***
2023-03-14 17:08:31 (21468): Guest Log:  *** Job finished ***
2023-03-14 17:08:31 (21468): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:14,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:17,627 | INFO     | [data] queue_monitor thread has finished
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:26,891 | WARNING  | no jobs in monitored_payloads queue (waited for 61 s)
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:26,891 | INFO     | [job] job monitor thread has finished
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:28,859 | INFO     | job.realtimelogging is not enabled
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:28,859 | INFO     | [payload] run_realtimelog thread has finished
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,299 | INFO     | end of generic workflow (traces error code: 0)
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,299 | INFO     | traces error code: 0
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,299 | INFO     | pilot has finished
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,369 [wrapper] ==== pilot stdout END ====
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,376 [wrapper] ==== wrapper stdout RESUME ====
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,384 [wrapper] pilotpid: 5518
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,392 [wrapper] Pilot exit status: 0
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,477 [wrapper] pandaids: 5753961892
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,491 [wrapper] apfmon messages muted
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,499 [wrapper] Test setup, not cleaning
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,506 [wrapper] ==== wrapper stdout END ====
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,513 [wrapper] ==== wrapper stderr END ====
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,528 [wrapper] wrapperexiting ec=0, duration=704
2023-03-14 17:08:31 (21468): Guest Log: 2023-03-14 16:08:29,537 [wrapper] apfmon messages muted
2023-03-14 17:08:31 (21468): Guest Log:  *** Error codes and diagnostics ***
2023-03-14 17:08:31 (21468): Guest Log:     "exeErrorCode": 65,
2023-03-14 17:08:31 (21468): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2023-03-14 17:08:31 (21468): Guest Log:     "pilotErrorCode": 1305,
2023-03-14 17:08:31 (21468): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2023-03-14 16:03:09,057 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2023-03-14 17:08:31 (21468): Guest Log:  *** Listing of results directory ***
2023-03-14 17:08:31 (21468): Guest Log: total 3456
2023-03-14 17:08:31 (21468): Guest Log: -rw-r--r--. 1 atlas atlas  386707 Mar 14 14:00 pilot3.tar.gz
2023-03-14 17:08:31 (21468): Guest Log: -rw-r--r--. 1 atlas atlas    4301 Mar 14 14:06 queuedata.json
2023-03-14 17:08:31 (21468): Guest Log: -rwx------. 1 atlas atlas   26447 Mar 14 14:08 runpilot2-wrapper.sh
2023-03-14 17:08:31 (21468): Guest Log: -rwxr-xr-x. 1 atlas atlas   17195 Mar 14 15:56 start_atlas.sh
2023-03-14 17:08:31 (21468): Guest Log: -rwxr-xr-x. 1 atlas atlas  398334 Mar 14 15:56 input.tar.gz
2023-03-14 17:08:31 (21468): Guest Log: -rwxr-xr-x. 1 atlas atlas    8809 Mar 14 15:56 init_data.xml
2023-03-14 17:08:31 (21468): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 14 15:56 EVNT.29838250._000010.pool.root.1 -> /data/./ATLAS.root_0
2023-03-14 17:08:31 (21468): Guest Log: -rw-r--r--. 1 atlas atlas    2543 Mar 14 15:56 pandaJob.out
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas     449 Mar 14 15:56 setup.sh.local
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas 1425857 Mar 14 15:58 cric_ddmendpoints.json
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas  965774 Mar 14 15:58 agis_schedconf.cvmfs.json
2023-03-14 17:08:31 (21468): Guest Log: drwx------. 4 atlas atlas     245 Mar 14 15:59 pilot3
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas     991 Mar 14 16:03 memory_monitor_summary.json
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas   33915 Mar 14 16:03 log.32413688._000229-56945-1678802895.job.log.tgz.1
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas    8398 Mar 14 16:08 heartbeat.json
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas    3018 Mar 14 16:08 pilotlog.txt
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas   69528 Mar 14 16:08 log.32413688._000229-56945-1678802895.job.log.1
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas     216 Mar 14 16:08 output.list
2023-03-14 17:08:31 (21468): Guest Log: -rw-r--r--. 1 atlas atlas     671 Mar 14 16:08 runtime_log
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas  122880 Mar 14 16:08 result.tar.gz
2023-03-14 17:08:31 (21468): Guest Log: -rw-r--r--. 1 atlas atlas   10585 Mar 14 16:08 runtime_log.err
2023-03-14 17:08:31 (21468): Guest Log: -rw-------. 1 atlas atlas     624 Mar 14 16:08 3Z4KDmEVKw2n7Olcko1bjSoqABFKDmABFKDm7AsVDmeLGKDmWIAMHo.diag
2023-03-14 17:08:31 (21468): Guest Log: Looking for outputfile HITS.32413688._000229-56945-1678802895.pool.root.1
2023-03-14 17:08:31 (21468): Guest Log: No HITS file was produced
2023-03-14 17:08:31 (21468): Guest Log: Successfully finished the ATLAS job!
2023-03-14 17:08:31 (21468): Guest Log: Copying the results back to the shared directory!
2023-03-14 17:08:31 (21468): Guest Log:  *** Contents of shared directory: ***
2023-03-14 17:08:31 (21468): Guest Log: total 426700
2023-03-14 17:08:31 (21468): Guest Log: -rwxrwxrwx. 1 root root 436382292 Mar 14 15:55 ATLAS.root_0
2023-03-14 17:08:31 (21468): Guest Log: -rwxrwxrwx. 1 root root      8809 Mar 14 15:55 init_data.xml
2023-03-14 17:08:31 (21468): Guest Log: -rwxrwxrwx. 1 root root    398334 Mar 14 15:43 input.tar.gz
2023-03-14 17:08:31 (21468): Guest Log: -rwxrwxrwx. 1 root root    122880 Mar 14  2023 result.tar.gz
2023-03-14 17:08:31 (21468): Guest Log: -rwxrwxrwx. 1 root root     17195 Mar 14 15:43 start_atlas.sh
2023-03-14 17:08:31 (21468): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-14 17:08:31 (21468): VM Completion File Detected.
2023-03-14 17:08:31 (21468): Powering off VM.
2023-03-14 17:08:32 (21468): Successfully stopped VM.
2023-03-14 17:08:32 (21468): Deregistering VM. (boinc_46557863108e7837, slot#1)
2023-03-14 17:08:32 (21468): Removing network bandwidth throttle group from VM.
2023-03-14 17:08:33 (21468): Removing VM from VirtualBox.
17:08:38 (21468): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN