Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2023-03-15 11:45:38 (27316): Detected: vboxwrapper 26206
2023-03-15 11:45:38 (27316): Detected: BOINC client v7.20.2
2023-03-15 11:45:38 (27316): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2023-03-15 11:45:39 (27316): Successfully copied 'init_data.xml' to the shared directory.
2023-03-15 11:45:39 (27316): Create VM. (boinc_0f55f58493343e87, slot#46)
2023-03-15 11:45:40 (27316): Setting Memory Size for VM. (7500MB)
2023-03-15 11:45:40 (27316): Setting CPU Count for VM. (5)
2023-03-15 11:45:40 (27316): Setting Chipset Options for VM.
2023-03-15 11:45:41 (27316): Setting Graphics Controller Options for VM.
2023-03-15 11:45:41 (27316): Setting Boot Options for VM.
2023-03-15 11:45:41 (27316): Setting Network Configuration for NAT.
2023-03-15 11:45:41 (27316): Enabling VM Network Access.
2023-03-15 11:45:42 (27316): Disabling USB Support for VM.
2023-03-15 11:45:42 (27316): Disabling COM Port Support for VM.
2023-03-15 11:45:42 (27316): Disabling LPT Port Support for VM.
2023-03-15 11:45:42 (27316): Disabling Audio Support for VM.
2023-03-15 11:45:43 (27316): Disabling Clipboard Support for VM.
2023-03-15 11:45:43 (27316): Disabling Drag and Drop Support for VM.
2023-03-15 11:45:43 (27316): Adding storage controller(s) to VM.
2023-03-15 11:45:43 (27316): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2023-03-15 11:45:44 (27316): Adding VirtualBox Guest Additions to VM.
2023-03-15 11:45:44 (27316): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2023-03-15 11:45:44 (27316): forwarding host port 63692 to guest port 80
2023-03-15 11:45:45 (27316): Enabling remote desktop for VM.
2023-03-15 11:45:45 (27316): Enabling shared directory for VM.
2023-03-15 11:45:46 (27316): Starting VM using VBoxManage interface. (boinc_0f55f58493343e87, slot#46)
2023-03-15 11:45:52 (27316): Successfully started VM. (PID = '28264')
2023-03-15 11:45:52 (27316): Reporting VM Process ID to BOINC.
2023-03-15 11:45:52 (27316): Guest Log: BIOS: VirtualBox 6.1.40
2023-03-15 11:45:52 (27316): Guest Log: CPUID EDX: 0x178bfbff
2023-03-15 11:45:52 (27316): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2023-03-15 11:45:52 (27316): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2023-03-15 11:45:52 (27316): VM state change detected. (old = 'poweredoff', new = 'running')
2023-03-15 11:45:52 (27316): Detected: Web Application Enabled (http://localhost:63692)
2023-03-15 11:45:52 (27316): Detected: Remote Desktop Enabled (localhost:63693)
2023-03-15 11:45:52 (27316): Preference change detected
2023-03-15 11:45:52 (27316): Setting CPU throttle for VM. (100%)
2023-03-15 11:45:52 (27316): Setting checkpoint interval to 1200 seconds. (Higher value of (Preference: 1200 seconds) or (Vbox_job.xml: 900 seconds))
2023-03-15 11:45:54 (27316): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2023-03-15 11:45:54 (27316): Guest Log: BIOS: Booting from Hard Disk...
2023-03-15 11:45:57 (27316): Guest Log: BIOS: KBD: unsupported int 16h function 03
2023-03-15 11:45:57 (27316): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2023-03-15 11:45:57 (27316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2023-03-15 11:46:04 (27316): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2023-03-15 11:46:04 (27316): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2023-03-15 11:46:16 (27316): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.000244 main     Log opened 2023-03-15T11:46:14.929928000Z
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.000361 main     OS Product: Linux
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.000391 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.000414 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.000495 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.000496 main     Process ID: 1412
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.000496 main     Package type: LINUX_64BITS_GENERIC
2023-03-15 11:46:16 (27316): Guest Log: 00:00:00.001419 main     5.2.32 r132073 started. Verbose level = 0
2023-03-15 11:46:16 (27316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2023-03-15 11:46:16 (27316): Guest Log: [INFO] Mounting shared directory
2023-03-15 11:46:16 (27316): Guest Log: [INFO] Checking for init_data.xml
2023-03-15 11:46:20 (27316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2023-03-15 11:46:20 (27316): Guest Log: [INFO] Detected branch: dev
2023-03-15 11:46:21 (27316): Guest Log: This is the dev version of the ATLAS job wrapper
2023-03-15 11:46:21 (27316): Guest Log: Copying input files
2023-03-15 11:46:26 (27316): Guest Log: 00:00:10.028923 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 123 914 000ns (GuestNow=1 678 877 185 810 718 000 ns GuestLast=1 678 880 774 934 632 000 ns fSetTimeLastLoop=true )
2023-03-15 11:46:33 (27316): Guest Log: Copied input files into RunAtlas.
2023-03-15 11:46:33 (27316): Guest Log: Detected user-configured HTTP proxy at http://10.116.178.201:3128 - will set in /etc/cvmfs/default.local
2023-03-15 11:46:43 (27316): Guest Log: Running cvmfs_config stat atlas.cern.ch
2023-03-15 11:46:43 (27316): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2023-03-15 11:46:43 (27316): Guest Log: 2.6.3.0 1687 0 29620 116766 4 1 3116421 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://10.116.178.201:3128 1
2023-03-15 11:46:46 (27316): Guest Log: copied the webapp to /var/www
2023-03-15 11:46:46 (27316): Guest Log: ATHENA_PROC_NUMBER=5
2023-03-15 11:46:46 (27316): Guest Log: ATHENA_CORE_NUMBER=5
2023-03-15 11:46:46 (27316): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2023-03-15 11:46:46 (27316): Guest Log:  *** Starting ATLAS job. (PandaID=5753961892 taskID=32413688) ***
2023-03-15 13:25:59 (27316): Status Report: Elapsed Time: '6000.000000'
2023-03-15 13:25:59 (27316): Status Report: CPU Time: '23965.703125'
2023-03-15 14:00:42 (27316): Guest Log:  *** Job finished ***
2023-03-15 14:00:42 (27316): Guest Log:  *** The last 20 lines of the pilot log: ***
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:28,047 | INFO     | [job] queue monitor thread has finished
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:29,428 | INFO     | [data] queue_monitor thread has finished
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:36,851 | INFO     | job.realtimelogging is not enabled
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:36,851 | INFO     | [payload] run_realtimelog thread has finished
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:36,884 | WARNING  | no jobs in monitored_payloads queue (waited for 73 s)
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:36,884 | INFO     | [job] job monitor thread has finished
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,462 | INFO     | end of generic workflow (traces error code: 0)
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,462 | INFO     | traces error code: 0
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,462 | INFO     | pilot has finished
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,518 [wrapper] ==== pilot stdout END ====
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,523 [wrapper] ==== wrapper stdout RESUME ====
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,528 [wrapper] pilotpid: 5517
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,532 [wrapper] Pilot exit status: 0
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,695 [wrapper] pandaids: 5753961892
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,705 [wrapper] apfmon messages muted
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,711 [wrapper] Test setup, not cleaning
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,716 [wrapper] ==== wrapper stdout END ====
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,721 [wrapper] ==== wrapper stderr END ====
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,731 [wrapper] wrapperexiting ec=0, duration=8027
2023-03-15 14:00:42 (27316): Guest Log: 2023-03-15 13:00:37,736 [wrapper] apfmon messages muted
2023-03-15 14:00:42 (27316): Guest Log:  *** Error codes and diagnostics ***
2023-03-15 14:00:42 (27316): Guest Log:     "exeErrorCode": 0,
2023-03-15 14:00:42 (27316): Guest Log:     "exeErrorDiag": "",
2023-03-15 14:00:42 (27316): Guest Log:     "pilotErrorCode": 0,
2023-03-15 14:00:42 (27316): Guest Log:     "pilotErrorDiag": "",
2023-03-15 14:00:42 (27316): Guest Log:  *** Listing of results directory ***
2023-03-15 14:00:42 (27316): Guest Log: total 301404
2023-03-15 14:00:42 (27316): Guest Log: -rw-r--r--. 1 atlas atlas    386707 Mar 15 08:36 pilot3.tar.gz
2023-03-15 14:00:42 (27316): Guest Log: -rw-r--r--. 1 atlas atlas      4332 Mar 15 08:44 queuedata.json
2023-03-15 14:00:42 (27316): Guest Log: -rwx------. 1 atlas atlas     26447 Mar 15 08:45 runpilot2-wrapper.sh
2023-03-15 14:00:42 (27316): Guest Log: -rwxr-xr-x. 1 atlas atlas     17279 Mar 15 10:46 start_atlas.sh
2023-03-15 14:00:42 (27316): Guest Log: -rwxr-xr-x. 1 atlas atlas    398353 Mar 15 10:46 input.tar.gz
2023-03-15 14:00:42 (27316): Guest Log: -rwxr-xr-x. 1 atlas atlas      8878 Mar 15 10:46 init_data.xml
2023-03-15 14:00:42 (27316): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 15 10:46 EVNT.29838250._000010.pool.root.1 -> /data/./ATLAS.root_0
2023-03-15 14:00:42 (27316): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Mar 15 10:46 pandaJob.out
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas       449 Mar 15 10:46 setup.sh.local
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas    972211 Mar 15 10:47 agis_schedconf.cvmfs.json
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas   1425877 Mar 15 10:47 agis_ddmendpoints.agis.ALL.json
2023-03-15 14:00:42 (27316): Guest Log: drwx------. 4 atlas atlas       245 Mar 15 10:47 pilot3
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas 304206526 Mar 15 12:59 HITS.32413688._000229-101696-1678869925.pool.root.1
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas      1030 Mar 15 13:00 memory_monitor_summary.json
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas    276462 Mar 15 13:00 log.32413688._000229-101696-1678869925.job.log.tgz.1
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas      7721 Mar 15 13:00 heartbeat.json
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas      2926 Mar 15 13:00 pilotlog.txt
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas    266477 Mar 15 13:00 log.32413688._000229-101696-1678869925.job.log.1
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas       399 Mar 15 13:00 output.list
2023-03-15 14:00:42 (27316): Guest Log: -rw-r--r--. 1 atlas atlas       674 Mar 15 13:00 runtime_log
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas    563200 Mar 15 13:00 result.tar.gz
2023-03-15 14:00:42 (27316): Guest Log: -rw-r--r--. 1 atlas atlas     10980 Mar 15 13:00 runtime_log.err
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas       640 Mar 15 13:00 HzXKDmNwbw2n7Olcko1bjSoqABFKDmABFKDm7AsVDmiOGKDmSUCJ1m.diag
2023-03-15 14:00:42 (27316): Guest Log: Looking for outputfile HITS.32413688._000229-101696-1678869925.pool.root.1
2023-03-15 14:00:42 (27316): Guest Log: HITS file was successfully produced
2023-03-15 14:00:42 (27316): Guest Log: -rw-------. 1 atlas atlas 304206526 Mar 15 12:59 /home/atlas/RunAtlas/HITS.32413688._000229-101696-1678869925.pool.root.1
2023-03-15 14:00:44 (27316): Guest Log: Successfully finished the ATLAS job!
2023-03-15 14:00:44 (27316): Guest Log: Copying the results back to the shared directory!
2023-03-15 14:00:44 (27316): Guest Log:  *** Contents of shared directory: ***
2023-03-15 14:00:44 (27316): Guest Log: total 724212
2023-03-15 14:00:44 (27316): Guest Log: -rwxrwxrwx. 1 root root 436382292 Mar 15 10:45 ATLAS.root_0
2023-03-15 14:00:44 (27316): Guest Log: -rwxrwxrwx. 1 root root 304206526 Mar 15 12:59 HITS.pool.root.1
2023-03-15 14:00:44 (27316): Guest Log: -rwxrwxrwx. 1 root root      8878 Mar 15 10:45 init_data.xml
2023-03-15 14:00:44 (27316): Guest Log: -rwxrwxrwx. 1 root root    398353 Mar 15 10:35 input.tar.gz
2023-03-15 14:00:44 (27316): Guest Log: -rwxrwxrwx. 1 root root    563200 Mar 15  2023 result.tar.gz
2023-03-15 14:00:44 (27316): Guest Log: -rwxrwxrwx. 1 root root     17279 Mar 15 10:35 start_atlas.sh
2023-03-15 14:00:44 (27316): Guest Log:  *** Success! Shutting down the machine. ***
2023-03-15 14:00:44 (27316): VM Completion File Detected.
2023-03-15 14:00:44 (27316): Powering off VM.
2023-03-15 14:00:45 (27316): Successfully stopped VM.
2023-03-15 14:00:45 (27316): Deregistering VM. (boinc_0f55f58493343e87, slot#46)
2023-03-15 14:00:45 (27316): Removing network bandwidth throttle group from VM.
2023-03-15 14:00:46 (27316): Removing VM from VirtualBox.
14:00:51 (27316): called boinc_finish(0)

</stderr_txt>
]]>

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